메뉴 건너뛰기




Volumn 35, Issue SUPPL.2, 2007, Pages

PKNOT: The protein KNOT web server

Author keywords

[No Author keywords available]

Indexed keywords

PHYTOCHROME; PROTEIN;

EID: 34547589009     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkm304     Document Type: Article
Times cited : (36)

References (23)
  • 1
    • 0037466290 scopus 로고    scopus 로고
    • Crystal structure of class i acetohydroxy acid isomeroreductase from Pseudomonas aeruginosa
    • Ahn, H.J., Eom, S.J., Yoon, H.J., Lee, B.I., Cho, H. and Suh, S.W. (2003) Crystal structure of class I acetohydroxy acid isomeroreductase from Pseudomonas aeruginosa. J. Mol. Biol., 328, 505-515.
    • (2003) J. Mol. Biol. , vol.328 , pp. 505-515
    • Ahn, H.J.1    Eom, S.J.2    Yoon, H.J.3    Lee, B.I.4    Cho, H.5    Suh, S.W.6
  • 2
    • 0037526102 scopus 로고    scopus 로고
    • Crystal structure of tRNA(m1G37)methyltransferase: Insights into tRNA recognition
    • Ahn, H.J., Kim, H.W., Yoon, H.J., Lee, B.I., Suh, S.W. and Yang, J.K. (2003) Crystal structure of tRNA(m1G37)methyltransferase: insights into tRNA recognition. EMBO J., 22, 2593-2603.
    • (2003) EMBO J. , vol.22 , pp. 2593-2603
    • Ahn, H.J.1    Kim, H.W.2    Yoon, H.J.3    Lee, B.I.4    Suh, S.W.5    Yang, J.K.6
  • 4
    • 0037375572 scopus 로고    scopus 로고
    • Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): A cofactor bound at a site formed by a knot
    • Lim, K., Zhang, H., Tempczyk, A., Krajewski, W., Bonander, N., Toedt, J., Howard, A., Eisenstein, E. and Herzberg, O. (2003) Structure of the YibK methyltransferase from Haemophilus influenzae (HI0766): a cofactor bound at a site formed by a knot. Proteins, 51, 56-67.
    • (2003) Proteins , vol.51 , pp. 56-67
    • Lim, K.1    Zhang, H.2    Tempczyk, A.3    Krajewski, W.4    Bonander, N.5    Toedt, J.6    Howard, A.7    Eisenstein, E.8    Herzberg, O.9
  • 5
    • 9644281537 scopus 로고    scopus 로고
    • Structure and function of the antibiotic resistance-mediating methyltransfer-ase AviRb from Streptomyces viridochromogenes
    • Mosbacher, T.G., Bechthold, A. and Schulz, G.E. (2005) Structure and function of the antibiotic resistance-mediating methyltransfer-ase AviRb from Streptomyces viridochromogenes. J. Mol. Biol., 345, 535-545.
    • (2005) J. Mol. Biol. , vol.345 , pp. 535-545
    • Mosbacher, T.G.1    Bechthold, A.2    Schulz, G.E.3
  • 6
    • 27844461604 scopus 로고    scopus 로고
    • A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome
    • Wagner, J.R., Brunzelle, J.S., Forest, K.T. and Vierstra, R.D. (2005) A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome. Nature, 438, 325-331.
    • (2005) Nature , vol.438 , pp. 325-331
    • Wagner, J.R.1    Brunzelle, J.S.2    Forest, K.T.3    Vierstra, R.D.4
  • 7
    • 0141592367 scopus 로고    scopus 로고
    • Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6A resolution: A novel methyltransferase fold
    • Liu, J., Wang, W., Shin, D.H., Yokota, H., Kim, R. and Kim, S.H. (2003) Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6A resolution: a novel methyltransferase fold. Proteins, 53, 326-328.
    • (2003) Proteins , vol.53 , pp. 326-328
    • Liu, J.1    Wang, W.2    Shin, D.H.3    Yokota, H.4    Kim, R.5    Kim, S.H.6
  • 8
    • 0141704142 scopus 로고    scopus 로고
    • Functional assignment based on structural analysis: Crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot
    • Forouhar, F., Shen, J., Xiao, R., Acton, T.B., Montelione, G.T. and Tong, L. (2003) Functional assignment based on structural analysis: crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot. Proteins, 53, 329-332.
    • (2003) Proteins , vol.53 , pp. 329-332
    • Forouhar, F.1    Shen, J.2    Xiao, R.3    Acton, T.B.4    Montelione, G.T.5    Tong, L.6
  • 10
    • 17644409796 scopus 로고    scopus 로고
    • Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: A novel enzyme in a new arginine biosynthetic pathway found in several eubacteria
    • Shi, D., Morizono, H., Yu, X., Roth, L., Caldovic, L., Allewell, N.M., Malamy, M.H. and Tuchman, M. (2005) Crystal structure of N-acetylornithine transcarbamylase from Xanthomonas campestris: a novel enzyme in a new arginine biosynthetic pathway found in several eubacteria. J. Biol. Chem., 280, 14366-14369.
    • (2005) J. Biol. Chem. , vol.280 , pp. 14366-14369
    • Shi, D.1    Morizono, H.2    Yu, X.3    Roth, L.4    Caldovic, L.5    Allewell, N.M.6    Malamy, M.H.7    Tuchman, M.8
  • 11
    • 28844506786 scopus 로고    scopus 로고
    • The crystal structure of a bacterial class II ketol-acid reductoisomerase: Domain conservation and evolution
    • Tyagi, R., Duquerroy, S., Navaza, J., Guddat, L.W. and Duggleby, R.G. (2005) The crystal structure of a bacterial class II ketol-acid reductoisomerase: domain conservation and evolution. Protein Sci., 14, 3089-3100.
    • (2005) Protein Sci. , vol.14 , pp. 3089-3100
    • Tyagi, R.1    Duquerroy, S.2    Navaza, J.3    Guddat, L.W.4    Duggleby, R.G.5
  • 12
    • 12544253837 scopus 로고    scopus 로고
    • Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate
    • Misaghi, S., Galardy, P.J., Meester, W.J., Ovaa, H., Ploegh, H.L. and Gaudet, R. (2005) Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate. J. Biol. Chem., 280, 1512-1520.
    • (2005) J. Biol. Chem. , vol.280 , pp. 1512-1520
    • Misaghi, S.1    Galardy, P.J.2    Meester, W.J.3    Ovaa, H.4    Ploegh, H.L.5    Gaudet, R.6
  • 14
    • 1242330308 scopus 로고    scopus 로고
    • Crystal structure of the S-adenosylmethio-nine synthetase ternary complex: A novel catalytic mechanism of S-adenosylmethionine synthesis from ATP and Met
    • Komoto, J., Yamada, T., Takata, Y., Markham, G.D. and Takusagawa, F. (2004) Crystal structure of the S-adenosylmethio-nine synthetase ternary complex: a novel catalytic mechanism of S-adenosylmethionine synthesis from ATP and Met. Biochemistry., 43, 1821-1831.
    • (2004) Biochemistry. , vol.43 , pp. 1821-1831
    • Komoto, J.1    Yamada, T.2    Takata, Y.3    Markham, G.D.4    Takusagawa, F.5
  • 15
    • 0034710671 scopus 로고    scopus 로고
    • A deeply knotted protein structure and how it might fold
    • Taylor, W.R. (2000) A deeply knotted protein structure and how it might fold. Nature, 406, 916-919.
    • (2000) Nature , vol.406 , pp. 916-919
    • Taylor, W.R.1
  • 16
    • 13844255609 scopus 로고    scopus 로고
    • Folding studies on a knotted protein
    • Mallam, A.L. and Jackson, S.E. (2005) Folding studies on a knotted protein. J. Mol. Biol., 346, 1409-1421.
    • (2005) J. Mol. Biol. , vol.346 , pp. 1409-1421
    • Mallam, A.L.1    Jackson, S.E.2
  • 17
    • 0042924171 scopus 로고    scopus 로고
    • A knot or not a knot? SETting the record 'straight' on proteins
    • Taylor, W.R., Xiao, B., Gamblin, S.J. and Lin, K. (2003) A knot or not a knot? SETting the record 'straight' on proteins. Comput. Biol. Chem., 27, 11-15.
    • (2003) Comput. Biol. Chem. , vol.27 , pp. 11-15
    • Taylor, W.R.1    Xiao, B.2    Gamblin, S.J.3    Lin, K.4
  • 19
    • 33646904782 scopus 로고    scopus 로고
    • Statistics of knots, geometry of conformations, and evolution of proteins
    • Lua, R.C. and Grosberg, A.Y. (2006) Statistics of knots, geometry of conformations, and evolution of proteins. PLoS Comput. Biol., 2, e45.
    • (2006) PLoS Comput. Biol. , vol.2
    • Lua, R.C.1    Grosberg, A.Y.2
  • 21
    • 0038820376 scopus 로고    scopus 로고
    • AstexViewer: A visualisation aid for structure-based drug design
    • Hartshorn, M.J. (2002) AstexViewer: a visualisation aid for structure-based drug design. J. Comput. Aided Mol. Des., 16, 871-881.
    • (2002) J. Comput. Aided Mol. Des. , vol.16 , pp. 871-881
    • Hartshorn, M.J.1
  • 22
    • 0037250308 scopus 로고    scopus 로고
    • PDB-REPRDB: A database of representative protein chains from the Protein Data Bank (PDB) in 2003
    • Noguchi, T. and Akiyama, Y. (2003) PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003. Nucleic Acids Res., 31, 492-493.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 492-493
    • Noguchi, T.1    Akiyama, Y.2
  • 23
    • 2942615325 scopus 로고    scopus 로고
    • Structure of a complex between a voltage-gated calcium channel beta-subunit and an alpha-subunit domain
    • Van Petegem, F., Clark, K.A., Chatelain, F.C. and Minor, D.L. Jr. (2004) Structure of a complex between a voltage-gated calcium channel beta-subunit and an alpha-subunit domain. Nature, 429, 671-675.
    • (2004) Nature , vol.429 , pp. 671-675
    • Van Petegem, F.1    Clark, K.A.2    Chatelain, F.C.3    Minor Jr., D.L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.