메뉴 건너뛰기




Volumn 1, Issue , 2006, Pages 473-477

Identification of transcription factor binding sites using GA and PSO

Author keywords

[No Author keywords available]

Indexed keywords

GIBBS SAMPLERS; PARTICLE SWARM OPTIMIZATION (PSO); POSITION WEIGHT MATRIX (PWM); TRANSCRIPTION FACTOR BINDING SITES;

EID: 34547494488     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ISDA.2006.171     Document Type: Conference Paper
Times cited : (6)

References (16)
  • 1
    • 0037464588 scopus 로고    scopus 로고
    • Collins F, Green E, Guttmacher A, Guyer M. US National Human Genome Institute: A vision for the future of genomics research. Nature 2003, 422:835-847.
    • Collins F, Green E, Guttmacher A, Guyer M. US National Human Genome Institute: A vision for the future of genomics research. Nature 2003, 422:835-847.
  • 2
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, Gene Expression and DNA Arrays
    • Lockhart, D., Winzeler, E.: Genomics, Gene Expression and DNA Arrays. Nature, 405 (2000) 827-836
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.1    Winzeler, E.2
  • 3
    • 0034072450 scopus 로고    scopus 로고
    • DNA binding sites: Representation and discovery
    • Stormo G: DNA binding sites: representation and discovery. Bioinformatics 2000, 16:16-23.
    • (2000) Bioinformatics , vol.16 , pp. 16-23
    • Stormo, G.1
  • 4
    • 0742306815 scopus 로고    scopus 로고
    • Computational prediction of transcription-factor binding site locations
    • Bulyk ML: Computational prediction of transcription-factor binding site locations. Genome Biol 2003,5:201.
    • (2003) Genome Biol , vol.5 , pp. 201
    • Bulyk, M.L.1
  • 5
    • 0032826179 scopus 로고    scopus 로고
    • Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
    • Hertz GZ, Stormo GD: Identifying DNA and protein patterns with statistically significant alignments of multiple sequences. Bioinformatics 1999, 15:563-577.
    • (1999) Bioinformatics , vol.15 , pp. 563-577
    • Hertz, G.Z.1    Stormo, G.D.2
  • 6
    • 34547497761 scopus 로고    scopus 로고
    • Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers
    • Bailey TL, Elkan C: Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
  • 9
    • 3142737815 scopus 로고    scopus 로고
    • Discovery of Sequence Motifs Related to Coexpression of Genes Using Evolutionary Computation
    • Fogel, G.B.: Discovery of Sequence Motifs Related to Coexpression of Genes Using Evolutionary Computation. Nucleic Acids Research, 32 (2004) 3826-3835
    • (2004) Nucleic Acids Research , vol.32 , pp. 3826-3835
    • Fogel, G.B.1
  • 10
    • 17844377609 scopus 로고    scopus 로고
    • Gad Getz and Eytan Domany: Finding Motifs in Promoter Regions
    • Pp
    • Libi Hertzberg, Or Zuk, Gad Getz and Eytan Domany: Finding Motifs in Promoter Regions: Journal of Computational Biology, Volume 12, Number 3, 2005, Pp. 314-330
    • (2005) Journal of Computational Biology , vol.12 , Issue.3 , pp. 314-330
    • Hertzberg, L.1    Zuk, O.2
  • 11
    • 0035228215 scopus 로고    scopus 로고
    • BioProspector: Discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes
    • Liu X, Brutlag DL, Liu JS: BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes. Pac Symp Biocomput 2001:127-138.
    • (2001) Pac Symp Biocomput , pp. 127-138
    • Liu, X.1    Brutlag, D.L.2    Liu, J.S.3
  • 12
    • 85142147026 scopus 로고    scopus 로고
    • Ben-Gal A. Shani A. Gohr: Identification of transcription factor binding sites with variable-order Bayesian networks Bioinformatics 2005, 21: 1657-2666
    • Ben-Gal A. Shani A. Gohr: Identification of transcription factor binding sites with variable-order Bayesian networks Bioinformatics 2005, 21: 1657-2666
  • 13
    • 0031855197 scopus 로고    scopus 로고
    • Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences
    • Yada T, Totoki Y, Ishikawa M, Asai K, Nakai K: Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences. Bioinformatics 1998, 14:317-325.
    • (1998) Bioinformatics , vol.14 , pp. 317-325
    • Yada, T.1    Totoki, Y.2    Ishikawa, M.3    Asai, K.4    Nakai, K.5
  • 16
    • 0032861774 scopus 로고    scopus 로고
    • SCPD: A promoter database of the yeast Saccharomyces cerevisiae
    • Zhu J, Zhang MQ: SCPD: a promoter database of the yeast Saccharomyces cerevisiae. Bioinformatics 1999, 15:607-611.
    • (1999) Bioinformatics , vol.15 , pp. 607-611
    • Zhu, J.1    Zhang, M.Q.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.