A highly divergent microsatellite facilitating fast and accurate DRB haplotyping in humans and rhesus macaques

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 21, 2007, Pages 8907-8912

  Doxiadis, Gaby G M ^a   De Groot, Nanine ^a   Claas, Frans H J ^b   Doxiadis, Ilias I N ^b   Van Rood, Jon J ^b   Bontrop, Ronald E ^a  

^a BIOMEDICAL PRIMATE RESEARCH CENTRE   (Netherlands)

^b LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

Author keywords

Biological science; MHC

Indexed keywords

HLA DR ANTIGEN; MICROSATELLITE DNA; BIOLOGICAL MARKER; HISTOCOMPATIBILITY ANTIGEN;

ARTICLE; DRB GENE; EXON; GENE; GENE SEQUENCE; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; HLA SYSTEM; HUMAN; MAJOR HISTOCOMPATIBILITY COMPLEX; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REPRODUCIBILITY; RHESUS MONKEY; ANIMAL; GENETICS; MACACA; MOLECULAR EVOLUTION; MOLECULAR GENETICS; TIME;

MACACA MULATTA; PRIMATES;

ANIMALS; BIOLOGICAL MARKERS; EVOLUTION, MOLECULAR; EXONS; HAPLOTYPES; HISTOCOMPATIBILITY ANTIGENS; HUMANS; MACACA MULATTA; MICROSATELLITE REPEATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; TIME FACTORS;

EID: 34547482567     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0702964104     Document Type: Article

References (46)

1. Marsh SG (1998) Tissue Antigens 51:467-507.
2. Bontrop RE, Otting N, de Groot NG, Doxiadis GG (1999) Immunol Rev 167:339-350.
3. Klein J, Satta Y, O'Huigin C, Takahata N (1993) Annu Rev Immunol 11:269-295.
4. Raymond CK, Kas A, Paddock M, Qiu R, Zhou Y, Subramanian S, Chang J, Palmieri A, Haugen E, Kaul R, Olson MV (2005) Genome Res 15:1250-1257.
5. Traherne JA, Horton R, Roberts AN, Miretti MM, Hurles ME, Stewart CA, Ashurst JL, Atrazhev AM, Coggill P, Palmer S, et al. (2006) PLoS Genet 2:e9.
6. Robinson J, Waller MJ, Parham P, de Groot N, Bontrop R, Kennedy LJ, Stoehr P, Marsh SG (2003) Nucleic Acids Res 31:311-314.
7. Doxiadis GG, Otting N, de Groot NG, Noort R, Bontrop RE (2000) J Immunol 164:3193-3199.
8. Slierendregt BL, Otting N, van Besouw N, Jonker M, Bontrop RE (1994) J Immunol 152:2298-2307.
9. Doxiadis GG, Otting N, de Groot NG, Bontrop RE (2001) Immunol Rev 183:76-85.
10. Khazand M, Peiberg C, Nagy M, Sauermann U (1999) Tissue Antigens 54:615-624.
11. Ellis SA, Bontrop RE, Antczak DF, Ballingall K, Davies CJ, Kaufman J, Kennedy LJ, Robinson J, Smith DM, Stear MJ, et al. (2006) Immunogenetics 57:953-958.
12. Klein J, Bontrop RE, Dawkins RL, Erlich HA, Gyllensten UB, Heise ER, Jones PP, Parham P, Wakeland EK, Watkins DI (1990) Immunogenetics 31:217-219.
13. Geluk A, Elferink DG, Slierendregt BL, van Meijgaarden KE, de Vries RR, Ottenhoff TH, Bontrop RE (1993) J Exp Med 177:979-987.
14. Bergstrom TF, Erlandsson R, Engkvist H, Josefsson A, Erlich HA, Gyllensten U (1999) Immunol Rev 167:351-365.
15. Mayer WE, O'Huigin C, Klein J (1993) Proc Natl Acad Sci USA 90:10720-10724.
16. Moreno-Pelayo MA, Fernandez-Soria VM, Paz-Artal E, Ferre-Lopez S, Rosal M, Morales P, Varela P, Arnaiz-Villena A (1999) Immunogenetics 49:843-850.
17. Kenter M, Otting N, de Weers M, Anholts J, Reiter C, Jonker M, Bontrop RE (1993) Hum Immunol 36:205-218.
18. Doxiadis GG, Otting N, de Groot NG, de Groot N, Rouweler AJ, Noort R, Verschoor EJ, Bontjer I, Bontrop RE (2003) Immunogenetics 55:540-551.
19. Doxiadis GG, Rouweler AJ, de Groot NG, Louwerse A, Otting N, Verschoor EJ, Bontrop RE (2006) Immunogenetics 58:259-268.
20. de Groot N, Doxiadis GG, De Groot NG, Otting N, Heijmans C, Rouweler AJ, Bontrop RE (2004) J Immunol 172:6152-6157.
21. Doxiadis GG, van der Wiel MK, Brok HP, de Groot NG, Otting N, 't Hart BA, van Rood JJ, Bontrop RE (2006) Proc Natl Acad Sci USA 103:5864-5868.
22. Penedo MC, Bontrop RE, Heijmans CM, Otting N, Noort R, Rouweler AJ, de Groot N, de Groot NG, Ward T, Doxiadis GG (2005)Immunogenetics 57:198-209.
23. Jones EY, Fugger L, Strominger JL, Siebold C (2006) Nat Rev Immunol 6:271-282.
24. Nepom GT, Erlich H (1991) Annu Rev Immunol 9:493-525.
25. Tisch R, McDevitt H (1996) Cell 85:291-297.
26. Undlien DE, Lie BA, Thorsby E (2001) Trends Genet 17:93-100.
27. Dankers MK, Roelen DL, Nagelkerke NJ, de Lange P, Persijn GG, Doxiadis II, Claas FH (2004) Hum Immunol 65:13-19.
28. Heemskerk MH, de Paus RA, Lurvink EG, Koning F, Mulder A, Willemze R, van Rood JJ, Falkenburg JH (2001) Proc Natl Acad Sci USA 98:6806-6811.
29. Opelz G, Wujciak T, Dohler B, Scherer S, Mytilineos J (1999) Rev Immunogenet 1:334-342.
30. Verduyn W, Doxiadis II, Anholts J, Drabbels JJ, Naipal A, D'Amaro J, Persijn GG, Giphart MJ, Schreuder GM (1993) Hum Immunol 37:59-67.
31. Andersson G, Larhammar D, Widmark E, Servenius B, Peterson PA, Rask L (1987) J Biol Chem 262:8748-8758.
32. Epplen C, Santos EJ, Guerreiro JF, van Helden P, Epplen JT (1997) Hum Genet 99:399-406.
33. Riess O, Kammerbauer C, Roewer L, Steimle V, Andreas A, Albert E, Nagai T, Epplen JT (1990) Immunogenetics 32:110-116.
34. Bergstrom TF, Engkvist H, Erlandsson R, Josefsson A, Mack SJ, Erlich HA, Gyllensten U (1999) Am J Hum Genet 64:1709-1718.
35. Kriener K, O'Huigin C, Tichy H, Klein J (2000) Immunogenetics 51:169-178.
36. Trtkova K, Mayer WE, O'Huigin C, Klein J (1995) Mol Phylogenet Evol 4:408-419.
37. Bontrop RE, Otting N, Slierendregt BL, Lanchbury JS (1995) Immunol Rev 143:33-62.
38. Schreuder GM, Hurley CK, Marsh SG, Lau M, Fernandez-Vina M, Noreen HJ, Setterholm M, Maiers M (2005) Tissue Antigens 65:1-55.
39. Marsh SG, Parham P, Barber LD (2000) The HLA FactsBook (Academic, London).
40. Lin L, Jin L, Lin X, Voros A, Underhill P, Mignot E (1998) Tissue Antigens 52:9-18.
41. Petes TD, Greenwell PW, Dominska M (1997) Genetics 146:491-498.
42. Wierdl M, Dominska M, Petes TD (1997) Genetics 146:769-779.
43. Jin L, Macaubas C, Hallmayer J, Kimura A, Mignot E (1996) Proc Natl Acad Sci USA 93:15285-15288.
44. Maueler W, Bassili G, Arnold R, Renkawitz R, Epplen JT (1999) Gene 226:9-23.
45. Vowles EJ, Amos W (2004) PLoS Biol 2:E199.
46. Swafford DL (2002) PAUP*: Phylogenetic Analysis Using Parsimony (*and Other Methods) (Sinauer, Sunderland, MA), Version 4.