메뉴 건너뛰기




Volumn 4463 LNBI, Issue , 2007, Pages 121-132

Algorithm for haplotype inferring via galled-tree networks with simple galls

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES; COMPUTER SIMULATION; DISEASES; GENETIC ALGORITHMS; POLYNOMIALS; TREES (MATHEMATICS);

EID: 34547442890     PISSN: 03029743     EISSN: 16113349     Source Type: Conference Proceeding    
DOI: 10.1007/978-3-540-72031-7_11     Document Type: Conference Paper
Times cited : (6)

References (23)
  • 3
    • 0025269067 scopus 로고
    • Inference of haplotypes from PCR-amplified samples of dipoid populartions
    • A. Clark, Inference of haplotypes from PCR-amplified samples of dipoid populartions. Molecular Biology and Evolution, 7:111-122, 1990.
    • (1990) Molecular Biology and Evolution , vol.7 , pp. 111-122
    • Clark, A.1
  • 4
    • 0034791035 scopus 로고    scopus 로고
    • High-resolution haplotype structure in the human genome
    • M. Daly, J. Rioux, S. Schaffner, T. Hudson, and E. Lander. High-resolution haplotype structure in the human genome, Nature Genetics, 29(2):229-232, 2001.
    • (2001) Nature Genetics , vol.29 , Issue.2 , pp. 229-232
    • Daly, M.1    Rioux, J.2    Schaffner, S.3    Hudson, T.4    Lander, E.5
  • 5
    • 34547440737 scopus 로고    scopus 로고
    • On intractability of haplotype inferring via galled-tree networks
    • manuscript
    • A. Gupta, J. Maňuch, L. Stacho, and X. Zhao, On intractability of haplotype inferring via galled-tree networks, (manuscript).
    • Gupta, A.1    Maňuch, J.2    Stacho, L.3    Zhao, X.4
  • 6
    • 33846524472 scopus 로고    scopus 로고
    • Characterization of the existence of galled-tree networks
    • A. Gupta, J. Maňuch, L. Stacho, and X. Zhao. Characterization of the existence of galled-tree networks. J. Bioinfo. and Comp. Biol., 4(6):1309-1328, 2006.
    • (2006) J. Bioinfo. and Comp. Biol , vol.4 , Issue.6 , pp. 1309-1328
    • Gupta, A.1    Maňuch, J.2    Stacho, L.3    Zhao, X.4
  • 8
    • 35048838589 scopus 로고    scopus 로고
    • An overview of combinatorial methods for haplotype inference
    • Computational Methods for SNPs and Haplotype Inference, of, Springer Berlin/Verlag
    • D. Gusfield. An overview of combinatorial methods for haplotype inference. In Computational Methods for SNPs and Haplotype Inference, volume 2983 of Lecture Notes in Computer Science, pages 9-25. Springer Berlin/Verlag, 2004.
    • (2004) Lecture Notes in Computer Science , vol.2983 , pp. 9-25
    • Gusfield, D.1
  • 9
    • 15344339638 scopus 로고    scopus 로고
    • Optimal, efficient reconstruction of root-unknown phylogenetic networks with constrained and structured recombination
    • D. Gusfield. Optimal, efficient reconstruction of root-unknown phylogenetic networks with constrained and structured recombination. J. Comput. Syst. Sci., 70(3):381-398, 2005.
    • (2005) J. Comput. Syst. Sci , vol.70 , Issue.3 , pp. 381-398
    • Gusfield, D.1
  • 11
    • 3242876395 scopus 로고    scopus 로고
    • Optimal, efficient reconstruction of phylogenetic networks with constrained recombination
    • D. Gusfield, S. Eddhu, and C. Langley. Optimal, efficient reconstruction of phylogenetic networks with constrained recombination. Journal of Bioinformatics and Computational Biology, 2(1):173-213, 2004.
    • (2004) Journal of Bioinformatics and Computational Biology , vol.2 , Issue.1 , pp. 173-213
    • Gusfield, D.1    Eddhu, S.2    Langley, C.3
  • 12
    • 35048855546 scopus 로고    scopus 로고
    • A survey of computational methods for determining haplotypes
    • Computational Methods for SNPs and Haplotype Inference, of, Springer Berlin, Verlag
    • B, V. Halldórsson, V. Bafna, N. Edwards, R. Lipert, S. Yooseph, and S. Istrail, A survey of computational methods for determining haplotypes. In Computational Methods for SNPs and Haplotype Inference, volume 2983 of Lecture Notes in Computer Science, pages 26-47, Springer Berlin / Verlag, 2004.
    • (2004) Lecture Notes in Computer Science , vol.2983 , pp. 26-47
    • Halldórsson, B.V.1    Bafna, V.2    Edwards, N.3    Lipert, R.4    Yooseph, S.5    Istrail, S.6
  • 13
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • J. Hein. Reconstructing evolution of sequences subject to recombination using parsimony. Mathematical Biosciences, 98:185-200, 1990.
    • (1990) Mathematical Biosciences , vol.98 , pp. 185-200
    • Hein, J.1
  • 14
    • 0027471670 scopus 로고
    • A heuristic method to reconstruct the history of sequences subject to recombination
    • J. Hein. A heuristic method to reconstruct the history of sequences subject to recombination, Journal of Molecular Evolution, 36:396-405, 1993.
    • (1993) Journal of Molecular Evolution , vol.36 , pp. 396-405
    • Hein, J.1
  • 15
    • 0036184745 scopus 로고    scopus 로고
    • Generating samples under a Wright-Fisher neutral model of genetic variation
    • R. R. Hudson. Generating samples under a Wright-Fisher neutral model of genetic variation, Bioinformatics, 18(2):337-338, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 337-338
    • Hudson, R.R.1
  • 19
    • 16544370982 scopus 로고    scopus 로고
    • On the minimum number of recombination events in the evolutionary history of DNA sequences
    • Y, Song and J, Hein, On the minimum number of recombination events in the evolutionary history of DNA sequences, Journal of Mathematical Biology, 48:160-186, 2003.
    • (2003) Journal of Mathematical Biology , vol.48 , pp. 160-186
    • Song, Y.1    Hein, J.2
  • 20
    • 33646165723 scopus 로고    scopus 로고
    • Algorithms for imperfect phylogeny haplotyping (IPPH) with a single homoplasy or recombination event
    • R. Casadio and G. Myers, editors, WABI, of, Springer
    • Y. S. Song, Y. Wu, and D. Gusfield, Algorithms for imperfect phylogeny haplotyping (IPPH) with a single homoplasy or recombination event, In R. Casadio and G. Myers, editors, WABI, volume 3692 of Lecture Notes in Computer Science, pages 152-164, Springer, 2005.
    • (2005) Lecture Notes in Computer Science , vol.3692 , pp. 152-164
    • Song, Y.S.1    Wu, Y.2    Gusfield, D.3
  • 21
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of bayesian methods for haplotype reconstruction from population genotype data
    • M. Stephens and P. Donnelly. A comparison of bayesian methods for haplotype reconstruction from population genotype data. American Journal of Human Genetics, 73:1162-9, 2003.
    • (2003) American Journal of Human Genetics , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 22
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • M. Stephens, N. Smith, and P. Donnelly. A new statistical method for haplotype reconstruction from population data. American Journal of Human Genetics, 68:978-989, 2001.
    • (2001) American Journal of Human Genetics , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.2    Donnelly, P.3
  • 23


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.