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Volumn , Issue , 2006, Pages 251-260

Prediction of protein function using common-neighbors in protein-protein interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

BAYESIAN FRAMEWORKS; PROTEIN FUNCTIONS; PROTEIN PROTEIN INTERACTION NETWORKS;

EID: 34547432974     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBE.2006.253342     Document Type: Conference Paper
Times cited : (17)

References (32)
  • 1
    • 0033536012 scopus 로고    scopus 로고
    • Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array
    • June
    • Alon, U., Barkai, N., Notterman, D.A., Gish, K., Ybarra, S., Mack, D. and Levine, A.J. Broad patterns of gene expression revealed by clustering analysis of tumor and normal colon tissues probed by oligonucleotide array. Proc. Natl. Acad. Sci. USA, Vol. 96(12):6745-6750, June 1999.
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , Issue.12 , pp. 6745-6750
    • Alon, U.1    Barkai, N.2    Notterman, D.A.3    Gish, K.4    Ybarra, S.5    Mack, D.6    Levine, A.J.7
  • 3
    • 0032561246 scopus 로고    scopus 로고
    • The transcriptional program of sporulation in budding yeast
    • Chu, S., DeRisi, J., Eisen, M., Mulholland, J., Botstein, D., Brown, P.O., et al. The transcriptional program of sporulation in budding yeast. Science, 282(5389):699-705, 1998.
    • (1998) Science , vol.282 , Issue.5389 , pp. 699-705
    • Chu, S.1    DeRisi, J.2    Eisen, M.3    Mulholland, J.4    Botstein, D.5    Brown, P.O.6
  • 5
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J.L., Iyer, V.R. and Brown, P.O. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, pages 680-686, 1997.
    • (1997) Science , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 9
    • 0035044077 scopus 로고    scopus 로고
    • Assessment of prediction accuracy of protein function from protein-protein interaction data
    • Hishigaki, H., Nakai, K., Ono, T., Tanigami, A., and Takagi, T. Assessment of prediction accuracy of protein function from protein-protein interaction data. Yeast, 18:523-531, 2001.
    • (2001) Yeast , vol.18 , pp. 523-531
    • Hishigaki, H.1    Nakai, K.2    Ono, T.3    Tanigami, A.4    Takagi, T.5
  • 12
    • 0033974688 scopus 로고    scopus 로고
    • Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine twohybrid interactions in all possible combinations between the yeast proteins
    • Ito, T., Tashiro, K., Muta, S., Ozawa, R., Chiba, T., Nishizawa, M., Yamamoto, K., Kuhara, S., and Sakaki, Y. Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine twohybrid interactions in all possible combinations between the yeast proteins. In Proceedings of National Academy of Sciences USA 97, pages 1143-1147, 2000.
    • (2000) Proceedings of National Academy of Sciences USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 13
    • 1542271409 scopus 로고    scopus 로고
    • Predicting protein function from protein/protein interaction data: A probabilistic approach
    • Letovsky, S. and Kasif, S. Predicting protein function from protein/protein interaction data: a probabilistic approach. Bioinformatics, 19:i197-1204, 2003.
    • (2003) Bioinformatics , vol.19
    • Letovsky, S.1    Kasif, S.2
  • 16
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte, E.M., Pellegrini, M., Ng, H.L., Rice, D.W., Yeates, T.O. and Eisenberg, D. Detecting protein function and protein-protein interactions from genome sequences. Science, 285:751-753, 1999.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.L.3    Rice, D.W.4    Yeates, T.O.5    Eisenberg, D.6
  • 17
    • 33644875537 scopus 로고    scopus 로고
    • Mewes, H.W, Frishman, D., Mayer, K., Munsterkotter, M., Noubibou, O., Pagel, P., Rattei, T., Oesterheld, M., Ruepp, A., Stumpften, V. MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucl Acids Res, 34:D169-D172, 2006.
    • Mewes, H.W, Frishman, D., Mayer, K., Munsterkotter, M., Noubibou, O., Pagel, P., Rattei, T., Oesterheld, M., Ruepp, A., Stumpften, V. MIPS: analysis and annotation of proteins from whole genomes in 2005. Nucl Acids Res, 34:D169-D172, 2006.
  • 21
    • 0028806048 scopus 로고
    • Quantitative monitoring of gene expression patterns with a complementary DNA microarray
    • Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270:467-470, 1995.
    • (1995) Science , vol.270 , pp. 467-470
    • Schena, M.1    Shalon, D.2    Davis, R.W.3    Brown, P.O.4
  • 22
    • 0242407063 scopus 로고    scopus 로고
    • Microarrays to characterize protein interactions on a whole-proteome scale
    • Schweitzer, B, Predki, P. and Snyder, M. Microarrays to characterize protein interactions on a whole-proteome scale. Proteomics, 3:2190-2199, 2003.
    • (2003) Proteomics , vol.3 , pp. 2190-2199
    • Schweitzer, B.1    Predki, P.2    Snyder, M.3
  • 23
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • Schwikowski, B., Uetz, P., and Fields, S. A network of protein-protein interactions in yeast. Nature Biotechnol, 18:1257-1261, 2000.
    • (2000) Nature Biotechnol , vol.18 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 25
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • Apr
    • Sprinzak, E., Sattath, S. and Margalit, H. How reliable are experimental protein-protein interaction data? J. Mol. Biol., 327(5):919-923, Apr. 2003.
    • (2003) J. Mol. Biol , vol.327 , Issue.5 , pp. 919-923
    • Sprinzak, E.1    Sattath, S.2    Margalit, H.3
  • 26
    • 0035861532 scopus 로고    scopus 로고
    • Systematic genetic analysis with ordered arrays of yeast deletion mutants
    • Tong, A.H., Evangelista, M., Parsons, A.B., Xu, H., Bader, G.D. et al. Systematic genetic analysis with ordered arrays of yeast deletion mutants. Science, 294:2364-2368, 2001.
    • (2001) Science , vol.294 , pp. 2364-2368
    • Tong, A.H.1    Evangelista, M.2    Parsons, A.B.3    Xu, H.4    Bader, G.D.5
  • 29
    • 0034943378 scopus 로고    scopus 로고
    • Wagner, A. The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes. Mol. Biol. Evol., 18:1283-1292, 2001.
    • Wagner, A. The Yeast Protein Interaction Network Evolves Rapidly and Contains Few Redundant Duplicate Genes. Mol. Biol. Evol., 18:1283-1292, 2001.
  • 30
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of "small-world" networks
    • Watts, D. and Strogatz, S. Collective dynamics of "small-world" networks. Nature, 393(440-442), 1998.
    • (1998) Nature , vol.393 , Issue.440-442
    • Watts, D.1    Strogatz, S.2
  • 31
    • 0037057376 scopus 로고    scopus 로고
    • Genomic functional annotation using co-evolution profiles of gene clusters
    • RESEARCH0060, Oct
    • Zheng, Y., Roberts, R.J., Kasif, S. Genomic functional annotation using co-evolution profiles of gene clusters. Genome Biol, RESEARCH0060, Oct 2002.
    • (2002) Genome Biol
    • Zheng, Y.1    Roberts, R.J.2    Kasif, S.3
  • 32
    • 0036790999 scopus 로고    scopus 로고
    • Transitive functional annotation by shortest-path analysis of gene expression data
    • Zhou, X., Kao, M.C., Wong, W.H. Transitive functional annotation by shortest-path analysis of gene expression data. In Proceedings of National Academy of Sciences USA 99, pages 12783-12788.
    • Proceedings of National Academy of Sciences USA , vol.99 , pp. 12783-12788
    • Zhou, X.1    Kao, M.C.2    Wong, W.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.