메뉴 건너뛰기




Volumn 4453 LNBI, Issue , 2007, Pages 211-225

Beyond galled trees - Decomposition and computation of galled networks

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; BINARY CODES; DATABASE SYSTEMS; GENETIC ENGINEERING; THEOREM PROVING;

EID: 34547405689     PISSN: 03029743     EISSN: 16113349     Source Type: Conference Proceeding    
DOI: 10.1007/978-3-540-71681-5_15     Document Type: Conference Paper
Times cited : (50)

References (27)
  • 1
    • 34047267637 scopus 로고
    • A canonical decomposition theory for metrics on a finite set
    • Bandelt, H.J., Dress, A.W.M.: A canonical decomposition theory for metrics on a finite set. Advances in Mathematics 92 (1992) 47-105
    • (1992) Advances in Mathematics , vol.92 , pp. 47-105
    • Bandelt, H.J.1    Dress, A.W.M.2
  • 2
    • 30744470609 scopus 로고    scopus 로고
    • Huson, D.H., Bryant, D.: Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23 (2006) 254-267 Software available from www.splitstree.org.
    • Huson, D.H., Bryant, D.: Application of phylogenetic networks in evolutionary studies. Molecular Biology and Evolution 23 (2006) 254-267 Software available from www.splitstree.org.
  • 3
    • 0034350321 scopus 로고    scopus 로고
    • Testing hybrization hypotheses based on incongruent gene trees
    • Sang, T., Zhong, Y.: Testing hybrization hypotheses based on incongruent gene trees. System. Biol. 49 (2000) 422-424
    • (2000) System. Biol , vol.49 , pp. 422-424
    • Sang, T.1    Zhong, Y.2
  • 4
    • 17044416291 scopus 로고    scopus 로고
    • Reconstructing patterns of reticulate evolution in plants
    • Linder, CR., Rieseberg, L.H.: Reconstructing patterns of reticulate evolution in plants. Am. J. Bot. 91 (2004) 1700-1708
    • (2004) Am. J. Bot , vol.91 , pp. 1700-1708
    • Linder, C.R.1    Rieseberg, L.H.2
  • 6
    • 26444512722 scopus 로고    scopus 로고
    • Reconstruction of reticulate networks from gene trees
    • Proceedings of the Ninth International Conference on Research in Computational Molecular Biology RECOMB, of, Springer Verlag
    • Huson, D., Kloepper, T., Lockhart, P., Steel, M.: Reconstruction of reticulate networks from gene trees. In: Proceedings of the Ninth International Conference on Research in Computational Molecular Biology (RECOMB). Volume 3500 of LNCS., Springer Verlag (2005) 233-249
    • (2005) LNCS , vol.3500 , pp. 233-249
    • Huson, D.1    Kloepper, T.2    Lockhart, P.3    Steel, M.4
  • 7
    • 34547456451 scopus 로고    scopus 로고
    • Computing the minimum number of hybridisation events for a consistent evolutionary history
    • In press
    • Bordewich, M., Semple, C.: Computing the minimum number of hybridisation events for a consistent evolutionary history. In press (2006)
    • (2006)
    • Bordewich, M.1    Semple, C.2
  • 9
    • 0020744702 scopus 로고
    • Properties of the neutral allele model with intergenic recombination
    • Hudson, R.R.: Properties of the neutral allele model with intergenic recombination. Theoretical Population Biology 23 (1983) 183-201
    • (1983) Theoretical Population Biology , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 10
    • 0025299784 scopus 로고
    • Reconstructing evolution of sequences subject to recombination using parsimony
    • Hein, J.: Reconstructing evolution of sequences subject to recombination using parsimony. Math. Biosci. (1990) 185-200
    • (1990) Math. Biosci , pp. 185-200
    • Hein, J.1
  • 11
    • 0030498194 scopus 로고    scopus 로고
    • Ancestral inference from samples of DNA sequences with recombination
    • Griffiths, R.C., Marjoram, P.: Ancestral inference from samples of DNA sequences with recombination. J. Computational Biology 3 (1996) 479-502
    • (1996) J. Computational Biology , vol.3 , pp. 479-502
    • Griffiths, R.C.1    Marjoram, P.2
  • 13
    • 35248892541 scopus 로고    scopus 로고
    • Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minimum number of recombination events
    • Song, Y., Hein, J.: Parsimonious reconstruction of sequence evolution and haplotype blocks: Finding the minimum number of recombination events. (2003) 287-302 Proceedings of the Workshop on Algorithms in Bioinformatics.
    • (2003) 287-302 Proceedings of the Workshop on Algorithms in Bioinformatics
    • Song, Y.1    Hein, J.2
  • 14
    • 85149602307 scopus 로고    scopus 로고
    • D. Gusfield, S.E., Langley, C.: The fine structure of galls in phylogenetic networks. INFORMS J. of Computing Special Issue on Computational Biology 16 (2004) 459-469
    • D. Gusfield, S.E., Langley, C.: The fine structure of galls in phylogenetic networks. INFORMS J. of Computing Special Issue on Computational Biology 16 (2004) 459-469
  • 15
    • 16544370982 scopus 로고    scopus 로고
    • On the minimum number of recombination events in the evolutionary history of DNA sequences
    • Song, Y., Hein, J.: On the minimum number of recombination events in the evolutionary history of DNA sequences. J. Math. Biol. 48 (2004) 160-186
    • (2004) J. Math. Biol , vol.48 , pp. 160-186
    • Song, Y.1    Hein, J.2
  • 17
    • 27544510614 scopus 로고    scopus 로고
    • Huson, D., Kloepper, T.: Computing recombination networks from binary sequences. Bioinformatics 21 (2005) ii159-ii165 ECCB.
    • Huson, D., Kloepper, T.: Computing recombination networks from binary sequences. Bioinformatics 21 (2005) ii159-ii165 ECCB.
  • 18
    • 15944363058 scopus 로고    scopus 로고
    • Constructing minimal ancestral recombination graphs
    • Song, Y., Hein, J.: Constructing minimal ancestral recombination graphs. J. Comp. Biol. 12 (2005) 147-169
    • (2005) J. Comp. Biol , vol.12 , pp. 147-169
    • Song, Y.1    Hein, J.2
  • 19
    • 30744479464 scopus 로고    scopus 로고
    • Lyngsø, R.B., Song, Y.S., Hein, J.: Minimum recombination histories by branch and bound. In: WABI. (2005) 239-250
    • Lyngsø, R.B., Song, Y.S., Hein, J.: Minimum recombination histories by branch and bound. In: WABI. (2005) 239-250
  • 22
    • 1342333397 scopus 로고    scopus 로고
    • Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium
    • Pryor, B.M., Bigelow, D.M.: Molecular characterization of Embellisia and Nimbya species and their relationship to Alternaria, Ulocladium and Stemphylium. Mycologia 95 (2003) 1141-1154
    • (2003) Mycologia , vol.95 , pp. 1141-1154
    • Pryor, B.M.1    Bigelow, D.M.2
  • 23
    • 0032213977 scopus 로고    scopus 로고
    • An estimate of phylogenetic relationships among culicine mosquitoes using a restriction map of the rDNA cistron
    • Kumar, A., Black, W., Rai, K.: An estimate of phylogenetic relationships among culicine mosquitoes using a restriction map of the rDNA cistron. Insect Molecular Biology 7 (1998) 367-373
    • (1998) Insect Molecular Biology , vol.7 , pp. 367-373
    • Kumar, A.1    Black, W.2    Rai, K.3
  • 24
    • 0014494672 scopus 로고
    • The number of heterozygous nucleotide sites maintained in a finite population due to the steady flux of mutations
    • Kimura, M.: The number of heterozygous nucleotide sites maintained in a finite population due to the steady flux of mutations. Genetics 61 (1969) 893903
    • (1969) Genetics , vol.61 , pp. 893903
    • Kimura, M.1
  • 26
    • 0001354740 scopus 로고
    • Treebase: A prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life
    • Sanderson, M.J., Donoghue, M.J., Piel, W., Eriksson, T.: Treebase: a prototype database of phylogenetic analyses and an interactive tool for browsing the phylogeny of life. Amer. Jour. Bot. 81 (1994) 183
    • (1994) Amer. Jour. Bot , vol.81 , pp. 183
    • Sanderson, M.J.1    Donoghue, M.J.2    Piel, W.3    Eriksson, T.4
  • 27
    • 33750265162 scopus 로고    scopus 로고
    • Huson, D., Steel, M., Whitfield, J.: Reducing distortion in phylogenetic networks. In Bücher, P., Moret, B., eds.: Algorithms in Bioinformatics. LNBI 4175 (2006) 150-161
    • Huson, D., Steel, M., Whitfield, J.: Reducing distortion in phylogenetic networks. In Bücher, P., Moret, B., eds.: Algorithms in Bioinformatics. LNBI 4175 (2006) 150-161


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.