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Volumn , Issue , 2006, Pages 135-140

Sequence homology search based on database indexing using the Profile Hidden Markov Model

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE SYSTEMS; DYNAMIC PROGRAMMING; HIDDEN MARKOV MODELS; INDEXING (MATERIALS WORKING); TREES (MATHEMATICS);

EID: 34547401427     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/BIBE.2006.253326     Document Type: Conference Paper
Times cited : (2)

References (15)
  • 1
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    • Hmmer: Profi le hmms for protein sequence analysis
    • October 27
    • "Hmmer: profi le hmms for protein sequence analysis," October 27, 2005, http://hmmer.wustl.edu/.
    • (2005)
  • 3
    • 0028181441 scopus 로고
    • Hidden markov models in computational biology: Applications to protein modeling
    • A. Krogh, M. Brown, I. S. Mian, K. Sjolander, and D. Haussler, "Hidden markov models in computational biology: Applications to protein modeling," Journal of Molecular Biology, vol. 235, no. 1501-1531, 1994.
    • (1994) Journal of Molecular Biology , vol.235 , Issue.1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.S.3    Sjolander, K.4    Haussler, D.5
  • 5
    • 0018480749 scopus 로고
    • Ubiquitous b-tree,ACM
    • D. Comer, 'Ubiquitous b-tree,"ACM Comput. Surv., vol. 11, no. 2, pp. 121-137, 1979.
    • (1979) Comput. Surv , vol.11 , Issue.2 , pp. 121-137
    • Comer, D.1
  • 8
    • 0001704377 scopus 로고
    • On-line construction of suffi x-trees
    • _, "On-line construction of suffi x-trees," Algorithmica, vol. 14, pp. 249-260, 1995.
    • (1995) Algorithmica , vol.14 , pp. 249-260
    • Ukkonen, E.1
  • 10
    • 2442603117 scopus 로고    scopus 로고
    • A hybrid indexing method for approximate string matching
    • special issue on Matching Patterns
    • G. Navarro and R. Baeza-Yates, "A hybrid indexing method for approximate string matching," Journal of Discrete Algorithms (JDA), vol. 1, no. 1, pp. 205-239, 2000, special issue on Matching Patterns.
    • (2000) Journal of Discrete Algorithms (JDA) , vol.1 , Issue.1 , pp. 205-239
    • Navarro, G.1    Baeza-Yates, R.2
  • 11
    • 0036876938 scopus 로고    scopus 로고
    • Database indexing for large dna and protein sequence collections
    • E. Hunt, M. P. Atkinson, and R. W. Irving, 'Database indexing for large dna and protein sequence collections," The VLDB Journal, vol. 11, no. 3, pp. 256-271, 2002.
    • (2002) The VLDB Journal , vol.11 , Issue.3 , pp. 256-271
    • Hunt, E.1    Atkinson, M.P.2    Irving, R.W.3
  • 12
    • 0003857782 scopus 로고    scopus 로고
    • October
    • S. R. Eddy, HMMER Userś Guide, October 2003, ftp://ftp.genetics.wustl.edu/pub/eddy/hmmer/CURRENT/Userguide.pdf.
    • (2003) HMMER Userś Guide
    • Eddy, S.R.1
  • 14
    • 0011542799 scopus 로고    scopus 로고
    • A. Bateman, E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffi ths-Jones, K. L. Howe, M. Marshall, and E. L. L. Sonnhammer, 'The pfam protein families database,Nucleic Acids Res., 30, no. 1, p. 276280, 2002.
    • A. Bateman, E. Birney, L. Cerruti, R. Durbin, L. Etwiller, S. R. Eddy, S. Griffi ths-Jones, K. L. Howe, M. Marshall, and E. L. L. Sonnhammer, 'The pfam protein families database,"Nucleic Acids Res., vol. 30, no. 1, p. 276280, 2002.
  • 15
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    • 'The pfam database of protein families and hmms, August, 2005, http://pfam.wustl.edu/.
    • 'The pfam database of protein families and hmms," August, 2005, http://pfam.wustl.edu/.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.