Identifying pattern-defined regulatory islands in mammalian genomes

Proceedings of the National Academy of Sciences of the United States of America

Volumn 104, Issue 24, 2007, Pages 10116-10121

  Cheung, Tom H ^a,b   Barthel, Kristen K B ^a   Yin, Lam Kwan ^a,c   Liu, Xuedong ^a  

^a UNIVERSITY OF COLORADO   (United States)

^b STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^c Dharmacon Inc   (United States)

Author keywords

Cis regulatory elements; Combinatorial regulation; Computational prediction; Myogenesis; Transcription

Indexed keywords

CIS ACTING ELEMENT; DNA; LUCIFERASE; TRANSCRIPTION FACTOR;

ANIMAL CELL; ARTICLE; BINDING SITE; CELL DIFFERENTIATION; CELL SPECIFICITY; CELL TYPE; CHROMATIN IMMUNOPRECIPITATION; COMPUTER MODEL; ENZYME ASSAY; GENE EXPRESSION REGULATION; GENOME; HUMAN; HUMAN GENOME; MOUSE; MUSCLE DEVELOPMENT; MUTAGENESIS; MYOBLAST; NONHUMAN; PATTERN DEFINED REGULATORY ISLAND; PREDICTION; PRIORITY JOURNAL; RAT; REPORTER GENE; SKELETAL MUSCLE; TRANSCRIPTION REGULATION; ALGORITHM; ANIMAL; BASE PAIRING; BIOLOGY; CELL LINE; GENETIC SELECTION; GENETIC TRANSCRIPTION; GENETICS; MAMMAL; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; REGULATORY SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SPECIES DIFFERENCE;

MAMMALIA; RATTUS;

ALGORITHMS; ANIMALS; BASE PAIRING; BASE SEQUENCE; BINDING SITES; CELL DIFFERENTIATION; CELL LINE; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; GENE EXPRESSION REGULATION; GENES, REPORTER; GENOME; HUMANS; LUCIFERASES; MAMMALS; MICE; MOLECULAR SEQUENCE DATA; MUSCLE DEVELOPMENT; RATS; REGULATORY ELEMENTS, TRANSCRIPTIONAL; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SELECTION (GENETICS); SPECIES SPECIFICITY; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 34547205141     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0704028104     Document Type: Article

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