Relative specificities of water and ammonia losses from backbone fragments in collision-activated dissociation

Journal of Proteome Research

Volumn 6, Issue 7, 2007, Pages 2669-2673

  Savitski, Mikhail M ^a   Kjeldsen, Frank ^a   Nielsen, Michael L ^a   Zubarev, Roman A ^a  

^a UPPSALA UNIVERSITY   (Sweden)

Author keywords

CAD; De novo sequencing; FTMS; Peptide identification

Indexed keywords

AMMONIA; ARGININE; ASPARAGINE; GLUTAMINE; HISTIDINE; LYSINE;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; COLLISIONALLY ACTIVATED DISSOCIATION; FOURIER TRANSFORM MASS SPECTROMETRY; PRIORITY JOURNAL; WATER ANALYSIS;

AMINO ACID SEQUENCE; AMINO ACIDS; AMMONIA; DATABASES, PROTEIN; FOURIER ANALYSIS; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PEPTIDES; SEQUENCE ANALYSIS, PROTEIN; TRYPSIN; WATER;

EID: 34547162942     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr070121z     Document Type: Article

References (23)

1. Steen, H.; Mann, M. Nat. Rev. Mol. Cell Biol. 2004, 5, 699-711.
2. Aebersold, R.; Mann, M. Nature 2003, 422, 198-207.
3. Mann, M.; Jensen, O. N. Nat. Biotechnol. 2003, 21, 255-261.
4. Savitski, M. M.; Nielsen, M. L.; Kjeldsen, F.; Zubarev, R. A. J. Proteome Res. 2005, 4, 2348-2354.
5. Frank, A.; Savitski, M. M.; Nielsen, M. L.; Zubarev, R. A.; Pevzner, P. J. Proteome Res., in press.
6. Frank, A.; Pevzner, P. Anal. Chem. 2005, 77, 964-973.
7. Perkins, D. N.; Pappin, D. J. C.; Creasy, D. M.; Cottrell, J. S. Electrophoresis 1999, 20, 3551-3567.
8. Tabb, D. L.; Smith, L. L.; Breci, L. A.; Wysocki, V. H.; Lin, D.; Yates, J. R. Anal. Chem. 2003, 75, 1155-1163.
9. Paizs, B.; Suhai, S. Mass Spectrom. Rev. 2005, 24, 508-548.
10. Farrugia, J. M.; O'Hair, R. A. J.; Reid, G. E. Int. J. Mass Spectrom. 2001, 210, 71-87.
11. Ballard, K. D.; Gaskell, S. J. J. Am. Soc. Mass Spectrom. 1993, 4, 477-481.
12. Mouls, L.; Aubagnac, J. L.; Martinez, J.; Enjalbal, C. J. Proteome Res., in press.
13. Neta, P.; Pu, Q. L.; Kilpatrick, L.; Yang, X. Y.; Stein, S. E. J. Am. Soc. Mass Spectrom. 2007, 18, 27-36.
14. Nielsen, M. L.; Savitski, M. M.; Zubarev, R. A. Mol. Cell. Proteomics 2005, 4, 835-845.
15. Savitski, M. M.; Kjeldsen, F.; Nielsen, M. L.; Zubarev, R. A. Angew. Chem., Int. Ed. 2006, 45, 5301-5303.
16. Savitski, M. M.; Nielsen, M. L.; Zubarev, R. A. Mol. Cell. Proteomics 2005, 4, 1180-1188.
17. Savitski, M. M.; Nielsen, M. L.; Zubarev, R. A. Mol. Cell. Proteomics 2006, 5, 935-948.
18. Fenn, J. B.; Mann, M.; Meng, C. K.; Wong, S. F.; Whitehouse, C. M. Science 1989, 246, 64-71.
19. Wilm, M.; Mann, M. Anal. Chem. 1996, 68, 1-8.
20. Aaserud, D. J.; Little, D. P.; Oconnor, P. B.; McLafferty, F. W. Rapid Commun. Mass Spectrom. 1995, 9, 871-876.
21. Zubarev, R. A.; Kelleher, N. L.; McLafferty, F. W. J. Am. Chem. Soc. 1998, 120, 3265-3266.
22. Frank, A.; Tanner, S.; Bafna, V.; Pevzner, P. J. Proteome Res. 2005, 4, 1287-1295.
23. Huang, Y. Y.; Triscari, J. M.; Pasa-Tolic, L.; Anderson, G. A.; Lipton, M. S.; Smith, R. D.; Wysocki, V. H. J. Am. Chem. Soc. 2004, 126, 3034-3035.