Molecular and phylogenetic characterization of a novel putative membrane transporter (SLC10A7), conserved in vertebrates and bacteria

European Journal of Cell Biology

Volumn 86, Issue 8, 2007, Pages 445-460

  Godoy, José R ^a   Fernandes, Carla ^a   Döring, Barbara ^a   Beuerlein, Knut ^b   Petzinger, Ernst ^a   Geyer, Joachim ^a  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b JUSTUS LIEBIG UNIVERSITY GIESSEN   (Germany)

Author keywords

Bile acid transport; C4orf13; Membrane topology; P7; Phylogeny; SBF domain; SLC10A7

Indexed keywords

CARRIER PROTEIN; HEMAGGLUTININ; PROTEIN SLC10A7; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIUM; CARBOXY TERMINAL SEQUENCE; CELL MEMBRANE; CELL STRAIN HEK293; CONTROLLED STUDY; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; MOLECULAR CLONING; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; PHYLOGENY; PLANT; PRIORITY JOURNAL; PROTEIN DOMAIN; TAXONOMY; UNINDEXED SEQUENCE; VERTEBRATE; XENOPUS LAEVIS; YEAST;

ANURA; BACTERIA (MICROORGANISMS); MUS; RATTUS; VERTEBRATA; XENOPUS LAEVIS;

EID: 34547096264     PISSN: 01719335     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ejcb.2007.06.001     Document Type: Article

References (45)

1. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
2. Ananthanarayanan M., Ng O.C., Boyer J.L., and Suchy F.J. Characterization of cloned rat liver Na+-bile acid cotransporter using peptide and fusion protein antibodies. Am. J. Physiol. 267 (1994) G637-G643
3. Arai M., Mitsuke H., Ikeda M., Xia J.X., Kikuchi T., Satake M., and Shimizu T. ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability. Nucleic Acids Res. 32 (2004) W390-W393
4. Ast G. How did alternative splicing evolve?. Nat. Rev. Genet. 5 (2004) 773-782
5. Banerjee A., and Swaan P.W. Membrane topology of human ASBT (SLC10A2) determined by dual label epitope insertion scanning mutagenesis. New evidence for seven transmembrane domains. Biochemistry 45 (2006) 943-953
6. Blom N., Gammeltoft S., and Brunak S. Sequence and structure-based prediction of eukaryotic protein phosphorylation sites. J. Mol. Biol. 294 (1999) 1351-1362
7. Blom N., Sicheritz-Ponten T., Gupta R., Gammeltoft S., and Brunak S. Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4 (2004) 1633-1649
8. Bobrowicz P., Wysocki R., Owsianik G., Goffeau A., and Ulaszewski S. Isolation of three contiguous genes, ACR1, ACR2 and ACR3, involved in resistance to arsenic compounds in the yeast Saccharomyces cerevisiae. Yeast 13 (1997) 819-828
9. Boyer J.L., Ng O.C., Ananthanarayanan M., Hofmann A.F., Schteingart C.D., Hagenbuch B., Stieger B., and Meier P.J. Expression and characterization of a functional rat liver Na+ bile acid cotransport system in COS-7 cells. Am. J. Physiol. 266 (1994) G382-G387
10. Brendel V., Bucher P., Nourbakhsh I.R., Blaisdell B.E., and Karlin S. Methods and algorithms for statistical analysis of protein sequences. Proc. Natl. Acad. Sci. USA 89 (1992) 2002-2006
11. Cattori V., Eckhardt U., and Hagenbuch B. Molecular cloning and functional characterization of two alternatively spliced Ntcp isoforms from mouse liver. Biochim. Biophys. Acta 1445 (1999) 154-159
12. Claros M.G., and von Heijne G. TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10 (1994) 685-686
13. Craddock A.L., Love M.W., Daniel R.W., Kirby L.C., Walters H.C., Wong M.H., and Dawson P.A. Expression and transport properties of the human ileal and renal sodium-dependent bile acid transporter. Am. J. Physiol. 274 (1998) G157-G169
14. Gamba G. Alternative splicing and diversity of renal transporters. Am. J. Physiol. 281 (2001) F781-F794
15. Gardy J.L., Spencer C., Wang K., Ester M., Tusnady G.E., Simon I., Hua S., deFays K., Lambert C., Nakai K., and Brinkman F.S. PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria. Nucleic Acids Res. 31 (2003) 3613-3617
16. Geyer J., Godoy J.R., and Petzinger E. Identification of a sodium-dependent organic anion transporter from rat adrenal gland. Biochem. Biophys. Res. Commun. 316 (2004) 300-306
17. Geyer J., Wilke T., and Petzinger E. The solute carrier family SLC10: more than a family of bile acid transporters regarding function and phylogenetic relationships. Naunyn Schmiedeberg's Arch. Pharmacol. 372 (2006) 413-431
18. Geyer J., Döring B., Meerkamp K., Ugele B., Bakhiya N., Fernandes C.F., Godoy J.R., Glatt H., and Petzinger E. Cloning and functional characterization of human sodium-dependent organic anion transporter (SLC10A6). J. Biol. Chem. (2007) 10.1074/jbc.M702663200 [Epub ahead of print]
19. Graveley B.R. Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17 (2001) 100-107
20. Hagenbuch B., and Dawson P. The sodium bile salts cotransport family SLC10. Pflügers Arch. Eur. J. Physiol. 447 (2004) 566-570
21. Hagenbuch B., and Meier P.J. Molecular cloning, chromosomal localization, and functional characterization of a human liver Na+/bile acid cotransporter. J. Clin. Invest. 93 (1994) 1326-1331
22. Hagenbuch B., Lubbert H., Stieger B., and Meier P.J. Expression of the hepatocyte Na+/bile acid cotransporter in Xenopus laevis oocytes. J. Biol. Chem. 265 (1990) 5357-5360
23. Hagenbuch B., Stieger B., Foguet M., Lubbert H., and Meier P.J. Functional expression cloning and characterization of the hepatocyte Na+/bile acid cotransport system. Proc. Natl. Acad. Sci. USA 88 (1991) 10629-10633
24. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
25. Hata S., Wang P., Eftychiou N., Ananthanarayanan M., Batta A., Salen G., Pang K.S., and Wolkoff A.W. Substrate specificities of rat oatp1 and ntcp: implications for hepatic organic anion uptake. Am. J. Physiol. 285 (2003) G829-G839
26. Hirokawa T., Boon-Chieng S., and Mitaku S. SOSUI: classification and secondary structure prediction system for membrane proteins. Bioinformatics 14 (1998) 378-379
27. Hussainzada N., Banerjee A., and Swaan P.W. Transmembrane domain VII of the human apical sodium-dependent bile acid transporter ASBT (SLC10A2) lines the substrate translocation pathway. Mol. Pharmacol. 70 (2006) 1565-1574
28. Julenius K., Molgaard A., Gupta R., and Brunak S. Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. Glycobiology 15 (2005) 153-164
29. Kramer W., Stengelin S., Baringhaus K.H., Enhsen A., Heuer H., Becker W., Corsiero D., Girbig F., Noll R., and Weyland C. Substrate specificity of the ileal and the hepatic Na+/bile acid cotransporters of the rabbit. I. Transport studies with membrane vesicles and cell lines expressing the cloned transporters. J. Lipid Res. 40 (1999) 1604-1617
30. Krogh A., Larsson B., von Heijne G., and Sonnhammer E.L. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305 (2001) 567-580
31. Lazaridis K.N., Tietz P., Wu T., Kip S., Dawson P.A., and LaRusso N.F. Alternative splicing of the rat sodium/bile acid transporter changes its cellular localization and transport properties. Proc. Natl. Acad. Sci. USA 97 (2000) 11092-11097
32. Mareninova O., Shin J.M., Vagin O., Turdikulova S., Hallén S., and Sachs G. Topography of the membrane domain of the liver Na+-dependent bile acid transporter. Biochemistry 44 (2005) 13702-13712
33. Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12 (1996) 357-358
34. Platte H.D., Honscha W., Schuh K., and Petzinger E. Functional characterization of the hepatic sodium-dependent taurocholate transporter stably transfected into an immortalized liver-derived cell line and V79 fibroblasts. Eur. J. Cell Biol. 70 (1996) 54-60
35. Sato T., and Kobayashi Y. The ars operon in the skin element of Bacillus subtilis confers resistance to arsenate and arsenite. J. Bacteriol. 180 (1998) 1655-1661
36. Shneider B.L., Dawson P.A., Christie D.M., Hardikar W., Wong M.H., and Suchy F.J. Cloning and molecular characterization of the ontogeny of a rat ileal sodium-dependent bile acid transporter. J. Clin. Invest. 95 (1995) 745-754
37. Stieger B., Hagenbuch B., Landmann L., Hochli M., Schroeder A., and Meier P.J. In situ localization of the hepatocytic Na+/taurocholate cotransporting polypeptide in rat liver. Gastroenterology 107 (1994) 1781-1787
38. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
39. Tusnady G.E., and Simon I. The HMMTOP transmembrane topology prediction server. Bioinformatics 17 (2001) 849-850
40. Ward A., Sanderson N.M., O'Reilly J., Rutherford N.G., Poolman B., and Henderson P.J.F. The amplified expression, identification, assay, and properties of hexahistidine-tagged bacterial membrane transport proteins. In: Baldwin S.A. (Ed). Membrane Transport - A Practical Approach (2000), Blackwell, Oxford 141-166
41. Wilkins M.R., Lindskog I., Gasteiger E., Bairoch A., Sanchez J.C., Hochstrasser D.F., and Appel R.D. Detailed peptide characterization using PeptideMass - a World-Wide-Web-accessible tool. Electrophoresis 18 (1997) 403-408
42. Wong M.H., Oelkers P., Craddock A.L., and Dawson P.A. Expression cloning and characterization of the hamster ileal sodium-dependent bile acid transporter. J. Biol. Chem. 269 (1994) 1340-1347
43. Wong M.H., Oelkers P., and Dawson P.A. Identification of a mutation in the ileal sodium-dependent bile acid transporter gene that abolishes transport activity. J. Biol. Chem. 270 (1995) 27228-27234
44. Wysocki R., Bobrowicz P., and Ulaszewski S. The Saccharomyces cerevisiae ACR3 gene encodes a putative membrane protein involved in arsenite transport. J. Biol. Chem. 272 (1997) 30061-30066
45. Zou X., Wang D., Qiu G., Ji C., Jin F., Wu M., Zheng H., Li X., Sun L., Wang Y., Tang R., Zhao R.C., and Mao Y. Molecular cloning and characterization of a novel human C4orf13 gene, tentatively a member of the sodium bile acid cotransporter family. Biochem. Genet. 43 (2005) 165-173