Cloning and expression of an α-amylase gene from Phanerochaete chrysosporium

Current Microbiology

Volumn 55, Issue 2, 2007, Pages 105-113

  Wu, Bo ^a   Hu, Guo Ku ^a   Feng, Hong ^a   Wu, Jin Ming ^a   Zhang, Yi Zheng ^a  

^a SICHUAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMYLASE; CARBON; GLUCOSE; NITROGEN; OXYGEN; STARCH;

ARTICLE; CARBON SOURCE; DOWN REGULATION; ENZYME ACTIVITY; FUNGUS; FUNGUS GROWTH; GENE EXPRESSION; GLUCOSE METABOLISM; HYDROLYSIS KINETICS; METABOLIC INHIBITION; MOLECULAR CLONING; MOLECULAR MODEL; NONHUMAN; NUCLEOTIDE SEQUENCE; PHANEROCHAETE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES CULTIVATION; STARVATION; UPREGULATION;

ALPHA-AMYLASE; AMINO ACID SEQUENCE; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DNA, FUNGAL; ESCHERICHIA COLI; GENE EXPRESSION; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; PHANEROCHAETE; PHYLOGENY; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

ESCHERICHIA COLI; FUNGI; PHANEROCHAETE CHRYSOSPORIUM;

EID: 34547094101     PISSN: 03438651     EISSN: 14320991     Source Type: Journal    
DOI: 10.1007/s00284-006-0600-x     Document Type: Article

References (38)

1. Belinky PA, Flikshtein N, Lechenko S, Gepstein S, Dosoretz CG (2003) Reactive oxygen species and induction of lignin peroxidase in Phanerochaete chrysosporium. Appl Envir Microbiol 69(11):6500-6506
2. Birch PR (1998) Targeted differential display of abundantly expressed sequences from the basidiomycete Phanerochaete chrysosporium which contain regions coding for fungal cellulose-binding domains. Curr Genet 33(1):70-76
3. Broda P, Birch PR, Brooks PR, Sims PF (1995) PCR-mediated analysis of lignocellulolytic gene transcription by Phanerochaete chrysosporium: Substrate-dependent differential expression within gene families. Appl Environ Microbiol 61(6):2358-2364
4. 2 on the expression and function of iron-responsive element-containing mrnas in b6 fibroblasts. J Biol Chem 276(23):19738-19745
5. Couee I, Sulmon C, Gouesbeg G, El Amrani A (2006) Involvement of soluble sugars in reactive oxygen species balance and responses to oxidative stress in plants. J Exp Bot 57(3):449-459
6. Da Lage JL, Feller G, Janecek S (2004) Horizontal gene transfer from eukarya to bacteria and domain shuffling: The alpha-amylase model. Cell Mol Life Sci 61(1):97-109
7. Doddapaneni H, Subramanian V, Yadav JS (2005) Physiological regulation, xenobiotic induction, and heterologous expression of p450 monooxygenase gene pc-3 (cyp63a3), a new member of the cyp63 gene cluster in the white-rot fungus Phanerochaete chrysosporium. Curr Microbiol 50(6):292-298
8. Doodapaneni H, Yadav JS (2004) Differential regulation and xenobiotic induction of tandem p450 monooxygenase genes pc-1 (cyp63a1) and pc-2 (cyp63a2) in the white-rot fungus Phanerochaete chrysosporium. Appl Microbiol Biotechnol 65(5):559-565
9. Fernando T, Bumpus JA, Aust SD (1990) Biodegradation of tnt (2,4,6-trinitrotoluene) by Phanerochaete chrysosporium. Appl Environ Microbiol 56(6):1666-1671
10. Ferrara MA, Bon Ep, Araujo Neto JS (2002) Use of steam explosion liquor from sugar cane bagasse for liginin peroxidase production by Phanerochaete chrysosporium. Appl Biochem Biotechnol 98-100:289-300
11. Ganesh Kumar A, Sekaran G, Krishnamoorthy S (2006) Solid state fermentation of achras zapota lignocellulose by Phanerochaete chrysosporium. Bioresour Technol 97(13):1521-1528
12. Garreton V, Carpinelli J, Jordana X, Holuigue L (2002) The as-1 promoter element is an oxidative stress-responsive element and salicylic and activates it via oxidative species. Plant Physiol 130(3):1516-1526
13. Haseltine C, Rolfsmeier M, Blum P (1996) The glucose effect and regulation of alpha-amylase synthesis in the hyperthermophilic archaeon sulfolobus solfataricus. J Bacteriol 178(4):945-950
14. Hickey DA, Benkel KI, Fong Y, Benkel BF (1994) A drosophila gene promoter is subject to glucose repression in yeast cells. PNAS 91(23):11109-11112
15. Ho S-L, Chao Y-C, Tong W-F, Yu S-M (2001) Sugar coordinately and differentially regulates growth-and stress-related gene expression via a complex signal transduction network and multiple control mechanisms. Plant Physiol 125(2):877-890
16. Li D, Alic M, Brown JA, Gold MH (1995) Regulation of manganese peroxidase gene transcription by hydrogen peroxide, chemical stress, and molecular oxygen. Apply Environ Microbiol 61(1):341-345
17. Lu C-A, Ho T-hD, Ho S-L, Yu S-M (2002) Three novel myb proteins with one DNA binding repeat mediate sugar and hormone regulation of {alpha}-amylase gene expression. Plant Cell 14(8):1963-1980
18. Lu C-A, Lim E-K, Yu S-M (1998) Sugar response sequence in the promoter of a rice alpha-amylase gene serves as a transcriptional enhancer. J Biol Chem 273(17):10120-10131
19. Marone M, Mazzetti S, De Ritis D, Pierelli L, Scambia G (2001) Semiquantitative rt-pcr analysis to assess the expression levels of multiple transcripts from the same sample. Biol Proced Online 3:19-25
20. Martinez D, Larrondo LF, Putnam N, Gelpke MD, Huang K, Chapman J, et al. (2004) Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain rp78. Nat Biotechnol 22(6):695-700
21. Moye-Rowley WS (2003) Regulation of the transeriptional response to oxidative stress in fungi: Similarities and differences. Eukaryot Cell 2(3):381-389
22. Ngugen T, Sherratt PJ, Pickett CB (2003) Regulatory mechanisms controlling gene expression mediated by the antioxidant response element. Annu Rev Pharmacol Toxicol. 43:233-260
23. Rho D, Hodgson J, Thiboutot S, Ampleman G, Hawari J (2001) Transformation of 2,4,6-trinitrotoluene (tnt) by immobilized Phanerochaete chrysosporium under fed-batch and continuous tnt feeding conditions. Biotechnol Bioeng 73(4):271-281
24. Roldan-Carrillo T, Rodriguez-Varquez R, Diaz-Cervantes D, Vazquez-Torres H, Manzur-Guzman A, Torre-Dominguez A (2003) Starch-based plastic polymer degradation by the white rot fungus Phanerochaete chrysosporium grown on sugarcane bagasse pith: Enzyme production. Bioresour Technol 86(1):1-5
25. Sadhukhan R, Roy SK, Raha SK, Manna S, Chakrabarty SL (1992) Induction and regulation of alpha-amylase synthesis in a cellulolytic thermophilic fungus myceliophthora thermophila d14 (atcc 48104). Ind J Exp Biol 30(6):482-486
26. Sambrook J, Russel DW (2007) Molecular cloning: A laboratory manual, 3rd ed. New York NY: Cold Spring Harbor Laboratory Press
27. Schafer G, Cramer T, Suske G, Kemmner W, Wiedemann B, Hocker M (2003) Oxidative stress regulates vascular endothelial growth factor-a gene transcription through sp1-and sp3-dependent activation of two proximal gc-rich promoter elements. J Biol Chem 278(10):8190-8198
28. Silva A, Bacci M, Pagnocca FC, Bueno OC, Hebling MJ (2006) Starch metabolism in leucoagaricus gongylophorus, the symbiotic fungus of leaf-cutting ants. Microbiol Res 161(4):299-303
29. Snellinx Z, Nepovim A, Taghavi S, Vangronsveld J, Vanek T, van der Lelie D (2002) Biological remediation of explosives and related nitroaromatic compounds. Environ Sci Pollut Res Int 9(1):48-61
30. Storozhenko S, De Pauw P, Van Montagu M, Inze D, Kushnir S (1998) The heat-shock element is a functional component of the arabidopsis apxl gene promoter. Plant Physiol 118(3):1005-1014
31. Taniguchi Y, Taniguchi-Ueda Y, Mori K, Yodoi J (1996) A novel promoter sequence is involved in the oxidative stress-induced expressed of the adult t-cell leukemia-derived factor (adf)/human thioredoxin(trx) gene. Nucleic Acids Res 24(14):2746-2752
32. Thakkar AP, Dhamankar VS, Kapadnis BP (2006) Biocatalytic decolourisation of molasses by Phanerochaete chrysosporium. Bioresour Technol 97(12):1377-1381
33. Tsukamoto S, Morita S, Hirano E, Yokoi H, Masumura T, Tanaka K (2005) A novel cis-element that is responsive to oxidative stress regulates three antioxidant defense genes in rice Plant Physiol 137(1):317-327
34. Yoo HY, Chang MS, Rho HM (1999) The activation of the rat copper/zine superoxide dismutase gene by hydrogen peroxide through the hydrogen peroxide-responsive element and by paraquat and heat shock through the same heat shock element. J Biol Chem 274(34):23887-23892
35. Yoshida M, Igarashi K, Kawai R, Aida K, Samejima M (2004) Differential transcription of beta-glucosidase and cellobiose dehydrogenase genes in cellulose degradation by the basidiomycete Phanerochaete chrysosporium. FEMS Microbiol Lett 235(1):177-182
36. Yoshida M, Igarashi K, Wada M, Kaneko S, Suzuki N, Matsumura H (2005) Characterization of carbohydrate-binding cytochrome b562 from the white-rot fungus Phanerochaete chrysosporium. Appl Environ Microbiol 71(8):4545-4555
37. Zacchi L, Burla G, Zuolong D, Harvey PJ (2000) Metabolism of cellulose by Phanerochaete chrysosporium in continuously agitated culture is associated with enhanced production of lignin peroxidase. J Biotechnol 78(2):185-192
38. Zhang YZ, Zylstra GJ, Oslen RH, Reddy CA (1986) Identification of cdna clones for ligmnase from Phanerochaete chrysosporium using synthetic ohgonucleotide probes. Biochem Biophys Res Commun 137(2):649-656