메뉴 건너뛰기




Volumn 8, Issue SUPPL. 4, 2007, Pages

SVM-Fold: A tool for discriminative multi-class protein fold and superfamily recognition

Author keywords

[No Author keywords available]

Indexed keywords

EFFICIENT IMPLEMENTATION; FEATURE REPRESENTATION; MACHINE LEARNING APPROACHES; NEAREST NEIGHBOR METHOD; PROTEIN CLASSIFICATION; PROTEIN CLASSIFICATION PROBLEMS; STATE-OF-THE-ART PERFORMANCE; STRUCTURE CLASSIFICATIONS;

EID: 34447648188     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-8-S4-S2     Document Type: Article
Times cited : (43)

References (29)
  • 2
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • 10.1016/0022-2836(81)90087-5 7265238
    • Smith T Waterman M Identification of common molecular subsequences Journal of Molecular Biology 1981, 147:195-197 10.1016/ 0022-2836(81)90087-5 7265238
    • (1981) Journal of Molecular Biology , vol.147 , pp. 195-197
    • Smith, T.1    Waterman, M.2
  • 3
    • 0028181441 scopus 로고
    • Hidden Markov models in computational biology: Applications to protein modeling
    • 10.1006/jmbi.1994.1104 8107089
    • Krogh A Brown M Mian IS Sjölander K Haussler D Hidden Markov models in computational biology: Applications to protein modeling Journal of Molecular Biology 1994, 235:1501-1531 10.1006/jmbi.1994.1104 8107089
    • (1994) Journal of Molecular Biology , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mian, I.S.3    Sjölander, K.4    Haussler, D.5
  • 4
    • 0032509105 scopus 로고    scopus 로고
    • Sequence comparisons using multiple sequences detect twice as many remote homologues as pairwise methods
    • 10.1006/jmbi.1998.2221 9837738
    • Park J Karplus K Barrett C Hughey R Haussler D Hubbard T Chothia C Sequence comparisons using multiple sequences detect twice as many remote homologues as pairwise methods Journal of Molecular Biology 1998, 284(4):1201-1210 10.1006/jmbi.1998.2221 9837738
    • (1998) Journal of Molecular Biology , vol.284 , Issue.4 , pp. 1201-1210
    • Park, J.1    Karplus, K.2    Barrett, C.3    Hughey, R.4    Haussler, D.5    Hubbard, T.6    Chothia, C.7
  • 5
    • 0034048878 scopus 로고    scopus 로고
    • A discriminative framework for detecting remote protein homologies
    • 10.1089/10665270050081405 10890390
    • Jaakkola T Diekhans M Haussler D A discriminative framework for detecting remote protein homologies Journal of Computational Biology 2000, 7(1-2):95-114 10.1089/10665270050081405 10890390
    • (2000) Journal of Computational Biology , vol.7 , Issue.1-2 , pp. 95-114
    • Jaakkola, T.1    Diekhans, M.2    Haussler, D.3
  • 9
    • 4444273377 scopus 로고    scopus 로고
    • Protein homology detection using string alignment kernels
    • 10.1093/bioinformatics/bth141 14988126
    • Saigo H Vert JP Ueda N Akutsu T Protein homology detection using string alignment kernels Bioinformatics 2004, 20(11):1682-1689 10.1093/ bioinformatics/bth141 14988126
    • (2004) Bioinformatics , vol.20 , Issue.11 , pp. 1682-1689
    • Saigo, H.1    Vert, J.P.2    Ueda, N.3    Akutsu, T.4
  • 10
    • 1542714925 scopus 로고    scopus 로고
    • Mismatch string kernels for discriminative protein classification
    • 10.1093/bioinformatics/btg431 14990442
    • Leslie C Eskin E Cohen A Weston J Noble WS Mismatch string kernels for discriminative protein classification Bioinformatics 2004, 20(4):467-476 10.1093/bioinformatics/btg431 14990442
    • (2004) Bioinformatics , vol.20 , Issue.4 , pp. 467-476
    • Leslie, C.1    Eskin, E.2    Cohen, A.3    Weston, J.4    Noble, W.S.5
  • 14
    • 0028961335 scopus 로고
    • SCOP: A structural classification of proteins database for the investigation of sequences and structures
    • 10.1006/jmbi.1995.0159 7723011
    • Murzin AG Brenner SE Hubbard T Chothia C SCOP: A structural classification of proteins database for the investigation of sequences and structures Journal of Molecular Biology 1995, 247(4):536-540 10.1006/ jmbi.1995.0159 7723011
    • (1995) Journal of Molecular Biology , vol.247 , Issue.4 , pp. 536-540
    • Murzin, A.G.1    Brenner, S.E.2    Hubbard, T.3    Chothia, C.4
  • 15
    • 84886761239 scopus 로고    scopus 로고
    • SVM-Fold http://svm-fold.c2b2.columbia.edu
    • SVM-Fold
  • 20
    • 0010099436 scopus 로고    scopus 로고
    • On the Learnability and Design of Output Codes for Multiclass Problems
    • Crammer K Singer Y On the Learnability and Design of Output Codes for Multiclass Problems Computational Learning Theory 2000:35-46
    • (2000) Computational Learning Theory , pp. 35-46
    • Crammer, K.1    Singer, Y.2
  • 25
    • 0033977581 scopus 로고    scopus 로고
    • The ASTRAL compendium for sequence and structure analysis
    • 102434 10592239 10.1093/nar/28.1.254
    • Brenner SE Koehl P Levitt M The ASTRAL compendium for sequence and structure analysis Nucleic Acids Research 2000, 28:254-256 102434 10592239 10.1093/nar/28.1.254
    • (2000) Nucleic Acids Research , vol.28 , pp. 254-256
    • Brenner, S.E.1    Koehl, P.2    Levitt, M.3
  • 26
    • 0030777303 scopus 로고    scopus 로고
    • CATH - A Hierarchic Classification of Protein Domain Structures
    • 0.1016/S0969-2126(97)00260-8 9309224
    • Orengo CA Michie AD Jones S Jones DT Swindells MB Thornton JM CATH - A Hierarchic Classification of Protein Domain Structures Structure 1997, 8:1093-1109 0.1016/S0969-2126(97)00260-8 9309224
    • (1997) Structure , Issue.8 , pp. 1093-1109
    • Orengo, C.A.1    Michie, A.D.2    Jones, S.3    Jones, D.T.4    Swindells, M.B.5    Thornton, J.M.6
  • 28
    • 11144273669 scopus 로고
    • The perceptron: A probabilistic model for information storage and organization in the brain
    • 10.1037/h0042519 13602029
    • Rosenblatt F The perceptron: A probabilistic model for information storage and organization in the brain Psychological Review 1958, 65:386-407 10.1037/h0042519 13602029
    • (1958) Psychological Review , vol.65 , pp. 386-407
    • Rosenblatt, F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.