-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0037161346
-
Molecular analysis of the echovirus 18 prototype. Evidence of interserotypic recombination with echovirus 9
-
Andersson, P., K. Edman, and A. M. Lindberg. 2002. Molecular analysis of the echovirus 18 prototype. Evidence of interserotypic recombination with echovirus 9. Virus Res. 85:71-83.
-
(2002)
Virus Res
, vol.85
, pp. 71-83
-
-
Andersson, P.1
Edman, K.2
Lindberg, A.M.3
-
3
-
-
0027317294
-
Mapping of antigenic sites of coxsackievirus B3 by synthetic peptides
-
Auvinen, P., M. J. Makela, M. Roivainen, M. Kallajoki, R. Vainionpaa, and T. Hyypia. 1993. Mapping of antigenic sites of coxsackievirus B3 by synthetic peptides. APMIS 101:517-528.
-
(1993)
APMIS
, vol.101
, pp. 517-528
-
-
Auvinen, P.1
Makela, M.J.2
Roivainen, M.3
Kallajoki, M.4
Vainionpaa, R.5
Hyypia, T.6
-
4
-
-
0018839639
-
Induction of neutralizing antibodies by the coxsackievirus B3 virion polypeptide, VP2
-
Beatrice, S. T., M. G. Katze, B. A. Zajac, and R. L. Crowell. 1980. Induction of neutralizing antibodies by the coxsackievirus B3 virion polypeptide, VP2. Virology 104:426-438.
-
(1980)
Virology
, vol.104
, pp. 426-438
-
-
Beatrice, S.T.1
Katze, M.G.2
Zajac, B.A.3
Crowell, R.L.4
-
5
-
-
0037370394
-
Characterization of a recombinant type 3/type 2 poliovirus isolated from a healthy vaccinee and containing a chimeric capsid protein VP1
-
Blomqvist, S., A. L. Bruu, M. Stenvik, and T. Hovi. 2003. Characterization of a recombinant type 3/type 2 poliovirus isolated from a healthy vaccinee and containing a chimeric capsid protein VP1. J. Gen. Virol. 84:573-580.
-
(2003)
J. Gen. Virol
, vol.84
, pp. 573-580
-
-
Blomqvist, S.1
Bruu, A.L.2
Stenvik, M.3
Hovi, T.4
-
6
-
-
33744761549
-
Evolution of 2B and 2C genomic parts of species B coxsackie viruses. Phylogenetic study and comparison with other regions
-
Bolanaki, E., C. Kottaridi, P. Markoulatos, L. Margaritis, and T. Katsorchis. 2006. Evolution of 2B and 2C genomic parts of species B coxsackie viruses. Phylogenetic study and comparison with other regions. Virus Genes 32:249-259.
-
(2006)
Virus Genes
, vol.32
, pp. 249-259
-
-
Bolanaki, E.1
Kottaridi, C.2
Markoulatos, P.3
Margaritis, L.4
Katsorchis, T.5
-
7
-
-
33748784320
-
Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes
-
Chan, Y. F., and A. Sazaly. 2006. Phylogenetic evidence for inter-typic recombination in the emergence of human enterovirus 71 subgenotypes. BMC Microbiol. 6:74-84.
-
(2006)
BMC Microbiol
, vol.6
, pp. 74-84
-
-
Chan, Y.F.1
Sazaly, A.2
-
8
-
-
3042604623
-
Molecular comparison of echovirus 11 strains circulating in Europe during an epidemic of multisystem hemorrhagic disease of infants indicates that evolution generally occurs by recombination
-
Chevaliez, S., A. Szendroï, V. Caro, J. Balanant, S. Guillot, G. Berencsi, and F. Delpeyroux. 2004. Molecular comparison of echovirus 11 strains circulating in Europe during an epidemic of multisystem hemorrhagic disease of infants indicates that evolution generally occurs by recombination. Virology 325:56-70.
-
(2004)
Virology
, vol.325
, pp. 56-70
-
-
Chevaliez, S.1
Szendroï, A.2
Caro, V.3
Balanant, J.4
Guillot, S.5
Berencsi, G.6
Delpeyroux, F.7
-
9
-
-
0034973281
-
Genomic features of intertypic recombinant Sabin poliovirus strains excreted by primary vaccinees
-
Cuervo, N. S., S. Guillot, N. Romanenkova, M. Combiescu, A. Aubert-Combiescu, M. Seghier, V. Caro, R. Crainic, and F. Delpeyroux. 2001. Genomic features of intertypic recombinant Sabin poliovirus strains excreted by primary vaccinees. J. Virol. 75:5740-5751.
-
(2001)
J. Virol
, vol.75
, pp. 5740-5751
-
-
Cuervo, N.S.1
Guillot, S.2
Romanenkova, N.3
Combiescu, M.4
Aubert-Combiescu, A.5
Seghier, M.6
Caro, V.7
Crainic, R.8
Delpeyroux, F.9
-
10
-
-
0032078341
-
Cell receptors for picornaviruses as determinants of cell tropism and pathogenesis
-
Evans, D. J., and J. W. Almond. 1998. Cell receptors for picornaviruses as determinants of cell tropism and pathogenesis. Trends Microbiol. 6:198-202.
-
(1998)
Trends Microbiol
, vol.6
, pp. 198-202
-
-
Evans, D.J.1
Almond, J.W.2
-
11
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
12
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
Kimura, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol 16:111-120.
-
(1980)
J. Mol. Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
13
-
-
3242810318
-
MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
14
-
-
33644925894
-
Molecular characterization of wild-type polioviruses isolated in Greece during the 1996 outbreak in Albania
-
Kyriakopoulou, Z., C. Kottaridi, E. Dedepsidis, E. Bolanaki, S. Levidiotou-Stefanou, and P. Markoulatos. 2006. Molecular characterization of wild-type polioviruses isolated in Greece during the 1996 outbreak in Albania. J. Clin. Microbiol. 44:1150-1152.
-
(2006)
J. Clin. Microbiol
, vol.44
, pp. 1150-1152
-
-
Kyriakopoulou, Z.1
Kottaridi, C.2
Dedepsidis, E.3
Bolanaki, E.4
Levidiotou-Stefanou, S.5
Markoulatos, P.6
-
15
-
-
0038325626
-
Evolution of the genome of human enterovirus B: Incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the species
-
Lindberg, A. M., P. Andersson, C. Savolainen, M. N. Mulders, and T. Hovi. 2003. Evolution of the genome of human enterovirus B: incongruence between phylogenies of the VP1 and 3CD regions indicates frequent recombination within the species. J. Gen. Virol. 84:1223-1235.
-
(2003)
J. Gen. Virol
, vol.84
, pp. 1223-1235
-
-
Lindberg, A.M.1
Andersson, P.2
Savolainen, C.3
Mulders, M.N.4
Hovi, T.5
-
16
-
-
0032889281
-
Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination
-
Lole, K. S., R. C. Bollinger, R. S. Paranjape, D. Gadkari, S. S. Kulkarni, N. G. Novak, R. Ingersoll, H. W. Sheppard, and S. C. Ray. 1999. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 73:152-160.
-
(1999)
J. Virol
, vol.73
, pp. 152-160
-
-
Lole, K.S.1
Bollinger, R.C.2
Paranjape, R.S.3
Gadkari, D.4
Kulkarni, S.S.5
Novak, N.G.6
Ingersoll, R.7
Sheppard, H.W.8
Ray, S.C.9
-
17
-
-
18744408450
-
Role of recombination in evolution of enteroviruses
-
Lukashev, A. N. 2005. Role of recombination in evolution of enteroviruses. Rev. Med. Virol. 15:157-167.
-
(2005)
Rev. Med. Virol
, vol.15
, pp. 157-167
-
-
Lukashev, A.N.1
-
18
-
-
0141856321
-
Recombination in circulating enteroviruses
-
Lukashev, A. N., V. A. Lashkevich, O. E. Ivanova, G. A. Koroleva, A. E. Hinkkanen, and J. Ilonen. 2003. Recombination in circulating enteroviruses. J. Virol. 77:10423-10431.
-
(2003)
J. Virol
, vol.77
, pp. 10423-10431
-
-
Lukashev, A.N.1
Lashkevich, V.A.2
Ivanova, O.E.3
Koroleva, G.A.4
Hinkkanen, A.E.5
Ilonen, J.6
-
19
-
-
28044464255
-
Recombination in circulating Human enterovirus B: Independent evolution of structural and non-structural genome regions
-
Lukashev, A. N., V. A. Lashkevich, O. E. Ivanova, G. A. Koroleva, A. E. Hinkkanen, and J. Ilonen. 2005. Recombination in circulating Human enterovirus B: independent evolution of structural and non-structural genome regions. J. Gen. Virol. 86:3281-3290.
-
(2005)
J. Gen. Virol
, vol.86
, pp. 3281-3290
-
-
Lukashev, A.N.1
Lashkevich, V.A.2
Ivanova, O.E.3
Koroleva, G.A.4
Hinkkanen, A.E.5
Ilonen, J.6
-
20
-
-
1342267755
-
Recombination in uveitis-causing enterovirus strains
-
Lukashev, A. N., V. A. Lashkevich, G. A. Koroleva, J. Ilonen, and A. E. Hinkkanen. 2004. Recombination in uveitis-causing enterovirus strains. J. Gen. Virol. 85:463-470.
-
(2004)
J. Gen. Virol
, vol.85
, pp. 463-470
-
-
Lukashev, A.N.1
Lashkevich, V.A.2
Koroleva, G.A.3
Ilonen, J.4
Hinkkanen, A.E.5
-
21
-
-
0036838642
-
Isolation of an intcrtypic poliovirus capsid recombinant from a child with vaccine-associated paralytic poliomyelitis
-
Martin, J., E. Samoilovich, G. Dunn, A. Lackenby, E. Feldman, A. Heath, E. Svirchenvskaya, G. Cooper, M. Yermalovich, and P. D. Minor. 2002. Isolation of an intcrtypic poliovirus capsid recombinant from a child with vaccine-associated paralytic poliomyelitis. J. Virol. 76:10921-10928.
-
(2002)
J. Virol
, vol.76
, pp. 10921-10928
-
-
Martin, J.1
Samoilovich, E.2
Dunn, G.3
Lackenby, A.4
Feldman, E.5
Heath, A.6
Svirchenvskaya, E.7
Cooper, G.8
Yermalovich, M.9
Minor, P.D.10
-
22
-
-
0029101761
-
Antibody recognition of picornaviruses and escape from neutralization: A structural view
-
Mateu, M. G. 1995. Antibody recognition of picornaviruses and escape from neutralization: a structural view. Virus Res. 38:1-24.
-
(1995)
Virus Res
, vol.38
, pp. 1-24
-
-
Mateu, M.G.1
-
23
-
-
0022387766
-
Lyophilized combination pools of enterovirus equine antisera: New LBM pools prepared from reserves of antisera stored frozen for two decades
-
Melnick, J. L., and I. L. Wimberly. 1985. Lyophilized combination pools of enterovirus equine antisera: new LBM pools prepared from reserves of antisera stored frozen for two decades. Bull. WHO 63:543-550.
-
(1985)
Bull. WHO
, vol.63
, pp. 543-550
-
-
Melnick, J.L.1
Wimberly, I.L.2
-
24
-
-
33846164069
-
Emergence of recent echovirus 30 lineages is marked by serial genetic recombination events
-
Mirand, A., C. Henquell, C. Archimbaud, H. Peigue-Lafeuille, and J. L. Bailly. 2007. Emergence of recent echovirus 30 lineages is marked by serial genetic recombination events. J. Gen. Virol. 88:166-176.
-
(2007)
J. Gen. Virol
, vol.88
, pp. 166-176
-
-
Mirand, A.1
Henquell, C.2
Archimbaud, C.3
Peigue-Lafeuille, H.4
Bailly, J.L.5
-
25
-
-
0029645145
-
The structure of coxsackievirus B3 at 3.5 Å resolution
-
Muckelbauer, J. K., M. Kremer, P. Minor, G. Diana, F. J. Dutko, J. Groarke, D. C. Pevear, and M. G. Rossmann. 1995. The structure of coxsackievirus B3 at 3.5 Å resolution. Structure 3:653-667.
-
(1995)
Structure
, vol.3
, pp. 653-667
-
-
Muckelbauer, J.K.1
Kremer, M.2
Minor, P.3
Diana, G.4
Dutko, F.J.5
Groarke, J.6
Pevear, D.C.7
Rossmann, M.G.8
-
26
-
-
0036999990
-
Genetic recombination and its role in the development of the HIV-1 pandemic
-
Najera, R., E. Delgado, L. Perez-Alvarez, and M. M. Thomson. 2002. Genetic recombination and its role in the development of the HIV-1 pandemic. AIDS 16:S3-S16.
-
(2002)
AIDS
, vol.16
-
-
Najera, R.1
Delgado, E.2
Perez-Alvarez, L.3
Thomson, M.M.4
-
27
-
-
0036297522
-
Open reading frame sequence of an Asian enterovirus 73 strain reveals that the prototype from California is recombinant
-
Norder, H., L. Bjerregaard, and L. O. Magnius. 2002. Open reading frame sequence of an Asian enterovirus 73 strain reveals that the prototype from California is recombinant. J. Gen. Virol. 83:1721-1728.
-
(2002)
J. Gen. Virol
, vol.83
, pp. 1721-1728
-
-
Norder, H.1
Bjerregaard, L.2
Magnius, L.O.3
-
28
-
-
0346688632
-
Evidence for frequent recombination within species Human enterovirus B based on complete genomic sequences of all thirty-seven serotypes
-
Oberste, M. S., K. Maher, and M. A. Pallansch. 2004. Evidence for frequent recombination within species Human enterovirus B based on complete genomic sequences of all thirty-seven serotypes. J. Virol. 78:855-867.
-
(2004)
J. Virol
, vol.78
, pp. 855-867
-
-
Oberste, M.S.1
Maher, K.2
Pallansch, M.A.3
-
29
-
-
0037375092
-
Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing
-
Oberste, M. S., W. A. Nix, K. Maher, and M. A. Pallansch. 2003. Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J. Clin. Virol. 26:375-377.
-
(2003)
J. Clin. Virol
, vol.26
, pp. 375-377
-
-
Oberste, M.S.1
Nix, W.A.2
Maher, K.3
Pallansch, M.A.4
-
30
-
-
1542287492
-
RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses
-
Oberste, M. S., S. Penaranda, and M. A. Pallansch. 2004. RNA recombination plays a major role in genomic change during circulation of coxsackie B viruses. J. Virol. 78:2948-2955.
-
(2004)
J. Virol
, vol.78
, pp. 2948-2955
-
-
Oberste, M.S.1
Penaranda, S.2
Pallansch, M.A.3
-
31
-
-
0036712986
-
Natural genetic recombination between co-circulating heterotypic enteroviruses
-
Oprisan, G., M. Combiescu, S. Guillot, V. Caro, A. Combiescu, F. Delpeyroux, and R. Crainic. 2002. Natural genetic recombination between co-circulating heterotypic enteroviruses. J. Gen. Virol. 83:2193-2200.
-
(2002)
J. Gen. Virol
, vol.83
, pp. 2193-2200
-
-
Oprisan, G.1
Combiescu, M.2
Guillot, S.3
Caro, V.4
Combiescu, A.5
Delpeyroux, F.6
Crainic, R.7
-
32
-
-
34548183615
-
-
Pallansch, M. A., and R. Roos. 2007. Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses, p. 839-893. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed., 1. Lippincott Williams and Wilkins, Philadelphia, PA.
-
Pallansch, M. A., and R. Roos. 2007. Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses, p. 839-893. In D. M. Knipe and P. M. Howley (ed.), Fields virology, 5th ed., vol. 1. Lippincott Williams and Wilkins, Philadelphia, PA.
-
-
-
-
33
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N., and M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
34
-
-
0028793170
-
Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
-
Salminen, M. O., J. K. Carr, D. S. Burke, and F. E. McCutchan. 1995. Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res. Hum. Retroviruses 11:1423-1425.
-
(1995)
AIDS Res. Hum. Retroviruses
, vol.11
, pp. 1423-1425
-
-
Salminen, M.O.1
Carr, J.K.2
Burke, D.S.3
McCutchan, F.E.4
-
35
-
-
0032849327
-
Evidence of recombination among enteroviruses
-
Santti, J., T. Hyypia, L. Kinnunen, and M. Salminen. 1999. Evidence of recombination among enteroviruses. J. Virol. 73:8741-8749.
-
(1999)
J. Virol
, vol.73
, pp. 8741-8749
-
-
Santti, J.1
Hyypia, T.2
Kinnunen, L.3
Salminen, M.4
-
36
-
-
33750742813
-
Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses
-
Simmonds, P. 2006. Recombination and selection in the evolution of picornaviruses and other mammalian positive-stranded RNA viruses. J. Virol. 80:11124-11140.
-
(2006)
J. Virol
, vol.80
, pp. 11124-11140
-
-
Simmonds, P.1
-
37
-
-
33645992762
-
Frequency and dynamics of recombination within different species of human enteroviruses
-
Simmonds, P., and J. Welch. 2006. Frequency and dynamics of recombination within different species of human enteroviruses. J. Virol. 80:483-493.
-
(2006)
J. Virol
, vol.80
, pp. 483-493
-
-
Simmonds, P.1
Welch, J.2
-
38
-
-
31644449968
-
Picornaviridae
-
C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball ed, Amsterdam, The Netherlands
-
Stanway, G., F. Brown, and P. Christian. 2005. Picornaviridae, p. 757-778. In C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger, and L. A. Ball (ed.), Virus taxonomy - classification and nomenclature of viruses. Eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, Amsterdam, The Netherlands.
-
(2005)
Virus taxonomy - classification and nomenclature of viruses. Eighth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press
, pp. 757-778
-
-
Stanway, G.1
Brown, F.2
Christian, P.3
-
39
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
40
-
-
84983719085
-
Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient
-
Yang, C. F., H. Y. Chen, J. Jorba, H. C. Sun, S. J. Yang, H. C. Lee, Y. C. Huang, T. Y. Lin, P. J. Chen, H. Shimizu, Y. Nishimura, A. Utama, M. A. Pallansch, T. Miyamura, O. Kew, and J. Y. Yang. 2005. Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient. J. Virol. 79:12623-12634.
-
(2005)
J. Virol
, vol.79
, pp. 12623-12634
-
-
Yang, C.F.1
Chen, H.Y.2
Jorba, J.3
Sun, H.C.4
Yang, S.J.5
Lee, H.C.6
Huang, Y.C.7
Lin, T.Y.8
Chen, P.J.9
Shimizu, H.10
Nishimura, Y.11
Utama, A.12
Pallansch, M.A.13
Miyamura, T.14
Kew, O.15
Yang, J.Y.16
|