The pea mitochondrial nucleoside diphosphate kinase cleaves DNA and RNA

FEBS Letters

Volumn 581, Issue 18, 2007, Pages 3507-3511

  Hammargren, Jenni ^a   Salinas, Thalia ^b   Maréchal Drouard, Laurence ^b   Knorpp, Carina ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b INST DE BIOL MOLEC DES PLANTES   (France)

Author keywords

Intermembrane space; Mitochondria; NDPK; Nuclease; Plant; tRNA

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; NUCLEASE; NUCLEOSIDE DIPHOSPHATE KINASE; PHOSPHOTRANSFERASE; PLASMID DNA; RECOMBINANT PROTEIN; RNA; TRANSFER RNA;

ARTICLE; DNA CLEAVAGE; ENZYME ACTIVITY; NONHUMAN; PRIORITY JOURNAL; RNA CLEAVAGE; RNA STRUCTURE;

ADENOSINE TRIPHOSPHATE; DNA; HISTIDINE; MITOCHONDRIA; MUTATION; NUCLEOSIDE-DIPHOSPHATE KINASE; PEAS; RNA; SERINE;

PISUM SATIVUM;

EID: 34447338055     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2007.06.062     Document Type: Article

References (37)

1. Leung S.M., and Hightower L.E. A 16-kDa protein functions as a new regulatory protein for Hsc70 molecular chaperone and is identified as a member of the Nm23/nucleoside diphosphate kinase family. Journal of Biological Chemistry 31 (1997) 2607-2614
2. Crawford R.M., et al. NDPK-A (but not NDPK-B) and AMPK alpha1 (but not AMPK alpha2) bind the cystic fibrosis transmembrane conductance regulator in epithelial cell membranes. Cell Signalling 18 (2006) 1595-1603
3. Fan Z., Beresford P.J., Oh D.Y., Zhang D., and Lieberman J. Tumor suppressor NM23-H1 is a granzyme A-activated DNase during CTL-mediated apoptosis, and the nucleosome assembly protein SET is its inhibitor. Cell 112 (2003) 659-672
4. Postel E.H., Berberich S.J., Flint S.J., and Ferrone C.A. Human c-myc transcription factor PuF identified as nm23-H2 nucleoside diphosphate kinase, a candidate suppressor of tumor metastasis. Science 261 (1993) 478-480
5. Postel E.H. Cleavage of DNA by human NM23-H2/nucleoside diphosphate kinase involves formation of a covalent protein-DNA complex. Journal of Biological Chemistry 274 (1999) 22821-22829
6. Yoon J.H., et al. Characterization of the 3′ → 5′exonuclease activity found in human nucleoside diphosphate kinase 1 (NDK1) and several of its homologues. Biochemistry 44 (2005) 15774-15786
7. Levit M.N., Abramczyk B.M., Stock J.B., and Postel E.H. Interactions between Escherichia coli nucleoside-diphosphate kinase and DNA. Journal of Biological Chemistry 277 (2002) 5163-5167
8. Kumar P., Verma A., Saini A.K., Chopra P., Chakraborti P.K., Singh Y., and Chowdhury S. Nucleoside diphosphate kinase from Mycobacterium tuberculosis cleaves single strand DNA within the human c-myc promoter in an enzyme-catalyzed reaction. Nucleic Acids Research 33 (2005) 2707-2714
9. Hammargren J., Sundström S., Johansson M., Bergman P., and Knorpp C. On the phylogeny, expression and targeting of plant nucleoside diphosphate kinases. Physiologia Plantarum 129 (2007) 79-89
10. Tanaka N., Ogura T., Noguchi T., Hirano H., Yabe N., and Hasunuma K. Phytochrome-mediated light signals are transduced to nucleoside diphosphate kinase in Pisum sativum L. cv. Alaska. Journal of Photochemistry and Photobiology 45 (1998) 113-121
11. Yang L.M., and Lamppa G.K. Rapid purification of a chloroplast nucleoside diphosphate kinase using CoA-affinity chromatography. Biochimica Biophysica Acta 1294 (1996) 99-102
12. Spetea C., Hundal T., Lundin B., Heddad M., Adamska I., and Andersson B. Multiple evidence for nucleotide metabolism in the chloroplast thylakoid lumen. The Proceedings of the National Academy of Sciences (USA) 101 (2004) 1409-1414
13. Struglics A., and Håkansson G. Purification of a serine and histidine phosphorylated mitochondrial nucleoside diphosphate kinase from Pisum sativum. European Journal of Biochemistry 262 (1999) 765-773
14. Sweetlove L.J., Mowday B., Hebestreit H.F., Leaver C.J., and Millar A.H. Nucleoside diphosphate kinase III is localized to the inter-membrane space in plant mitochondria. FEBS Letters 508 (2001) 272-276
15. Choi G., Yi H., and Lee J. Phytochrome signalling is mediated through nucleoside diphosphate kinase-II. Nature 401 (1999) 610-613
16. Ryu J.S., et al. Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. Cell 120 (2005) 395-406
17. Zimmermann S., Baumann A., Jaekel K., Marbach I., Engelberg D., and Frohnmeyer H. UV-responsive genes of Arabidopsis revealed by similarity to the Gcn4-mediated UV response in yeast. Journal of Biological Chemistry 274 (1999) 17017-17024
18. Moon H., et al. NDP kinase 2 interacts with two oxidative stress-activated MAPKs to regulate cellular redox state and enhances multiple stress tolerance in transgenic plants. The Proceedings of the National Academy of Sciences (USA) 100 (2003) 358-363
19. Johansson M., Mackenzie-Hose A., Andersson I., and Knorpp C. Structure and mutational analysis of a plant mitochondrial nucleoside diphosphate kinase. Identification of residues involved in serine phosphorylation and oligomerization. Plant Physiology 136 (2004) 3034-3042
20. Delage L., Dietrich A., Cosset A., and Marechal-Drouard L. In vitro import of a nuclearly encoded tRNA into mitochondria of Solanum tuberosum. Molecular Cell Biology 23 (2003) 4000-4012
21. Gagliardi D., Perrin R., Marechal-Drouard L., Grienenberger J.M., and Leaver C.J. Plant mitochondrial polyadenylated mRNAs are degraded by a 3′- to 5′-exoribonuclease activity, which proceeds unimpeded by stable secondary structures. Journal of Biological Chemistry 276 (2001) 43541-43547
22. Hildebrandt M., Lacombe M.L., Mesnildrey S., and Veron M. A human NDP-kinase B specifically binds single-stranded poly-pyrimidine sequences. Nucleic Acids Research 23 (1995) 3858-3864
23. Ambrus A., Chen D., Dai J., Jones R.A., and Yang D. Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization. Biochemistry 44 (2005) 2048-2058
24. Postel E.W., Weiss V.H., Beneken J., and Kirtane A. Mutational analysis of NM23-H2/NDP kinase identifies the structural domains critical to recognition of a c-myc regulatory element. Biochemistry 93 (1996) 6892-6897
25. Mesnildrey S., Agou F., and Veron M. The in vitro DNA binding properties of NDP kinase are related to its oligomeric state. FEBS Letters 418 (1997) 53-57
26. Postel E.H., and Ferrone C.A. Nucleoside diphosphate kinase enzyme activity of NM23-H2/PuF is not required for its DNA binding and in vitro transcriptional functions. Journal of Biological Chemistry 269 (1994) 8627-8630
27. Postel E.H., Abramczyk B.A., Gursky S.K., and Xu Y. Structure-based mutational and functional analysis identify human NM23-H2 as a multifunctional enzyme. Biochemistry 41 (2002) 6330-6337
28. Borisjuk L., Rolletschek H., Walenta S., Panitz R., Wobus U., and Weber H. Energy status and its control on embryogenesis of legumes: ATP distribution within Vicia faba embryos is developmentally regulated and correlated with photosynthetic capacity. Plant Journal 36 (2003) 318-329
29. Farre E.M., Tiessen A., Roessner U., Geigenberger P., Trethewey R.N., and Willmitzer L. Analysis of the compartmentation of glycolytic intermediates, nucleotides, sugars, organic acids, amino acids, and sugar alcohols in potato tubers using a nonaqueous fractionation method. Plant Physiology 127 (2001) 685-700
30. Gardestrom P., and Wigge B. Influence of photorespiration on ATP/ADP ratios in the chloroplasts, mitochondria, and cytosol, studied by rapid fractionation of barley (Hordeum vulgare) protoplasts. Plant Physiology 88 (1988) 69-76
31. Knorpp C., Johansson M., and Baird A.M. Plant mitochondrial nucleoside diphosphate kinase is attached to the membrane through interaction with the adenine nucleotide translocator. FEBS Letters 555 (2003) 363-366
32. Vacca R.A., de Pinto M.C., Valenti D., Passarella S., Marra E., and De Gara L. Production of reactive oxygen species, alteration of cytosolic ascorbate peroxidase, and impairment of mitochondrial metabolism are early events in heat shock-induced programmed cell death in tobacco Bright-Yellow 2 cells. Plant Physiology 134 (2004) 1100-1112
33. Valenti D., Vacca R.A., de Pinto M.C., De Gara L., Marra E., and Passarella S. In the early phase of programmed cell death in Tobacco Bright Yellow 2 cells the mitochondrial adenine nucleotide translocator, adenylate kinase and nucleoside diphosphate kinase are impaired in a reactive oxygen species-dependent manner. Biochimica et Biophysica Acta 1767 (2007) 66-78
34. Munoz-Pinedo C., Guio-Carrion A., Goldstein J.C., Fitzgerald P., Newmeyer D.D., and Green D.R. Different mitochondrial intermembrane space proteins are released during apoptosis in a manner that is coordinately initiated but can vary in duration. The Proceedings of the National Academy of Sciences (USA) 103 (2006) 11573-11578
35. Li L.Y., Luo X., and Wang X. Endonuclease G is an apoptotic DNase when released from mitochondria. Nature 412 (2001) 95-99
36. Susin S.A., et al. Molecular characterization of mitochondrial apoptosis-inducing factor. Nature 397 (1999) 441-446
37. Balk J., Chew S.K., Leaver C.J., and McCabe P.F. The intermembrane space of plant mitochondria contains a DNase activity that may be involved in programmed cell death. Plant Journal 34 (2003) 573-583