-
1
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Consortium
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al (2000) Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet 25: 25-29
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
2
-
-
0000018503
-
Teosinte and the origin of maize
-
Beadle GW (1939) Teosinte and the origin of maize. J Hered 30: 245-247
-
(1939)
J Hered
, vol.30
, pp. 245-247
-
-
Beadle, G.W.1
-
3
-
-
0038522873
-
GeneMerge - post-genomic analysis, data mining, and hypothesis testing
-
Castillo-Davis CI, Hartl DL (2003) GeneMerge - post-genomic analysis, data mining, and hypothesis testing. Bioinformatics 19: 891-892
-
(2003)
Bioinformatics
, vol.19
, pp. 891-892
-
-
Castillo-Davis, C.I.1
Hartl, D.L.2
-
4
-
-
33646368697
-
A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture
-
Clark RM, Wagler TN, Quijada P, Doebley J (2006) A distant upstream enhancer at the maize domestication gene tb1 has pleiotropic effects on plant and inflorescent architecture. Nat Genet 38: 594-597
-
(2006)
Nat Genet
, vol.38
, pp. 594-597
-
-
Clark, R.M.1
Wagler, T.N.2
Quijada, P.3
Doebley, J.4
-
5
-
-
0037108904
-
Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations
-
Cong B, Liu J, Tanksley SD (2002) Natural alleles at a tomato fruit size quantitative trait locus differ by heterochronic regulatory mutations. Proc Natl Acad Sci USA 99: 13606-13611
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 13606-13611
-
-
Cong, B.1
Liu, J.2
Tanksley, S.D.3
-
6
-
-
33845722174
-
Cis-regulatory evolution of chalcone-synthase expression in the genus Arabidopsis
-
de Meaux J, Pop A, Mitchell-Olds T (2006) Cis-regulatory evolution of chalcone-synthase expression in the genus Arabidopsis. Genetics 174: 2181-2202
-
(2006)
Genetics
, vol.174
, pp. 2181-2202
-
-
de Meaux, J.1
Pop, A.2
Mitchell-Olds, T.3
-
7
-
-
10944265010
-
The genetics of maize evolution
-
Doebley J (2004) The genetics of maize evolution. Annu Rev Genet 38: 37-59
-
(2004)
Annu Rev Genet
, vol.38
, pp. 37-59
-
-
Doebley, J.1
-
8
-
-
33845618112
-
The molecular genetics of crop domestication
-
Doebley J, Gaut BS, Smith BD (2006) The molecular genetics of crop domestication. Cell 127: 1309-1321
-
(2006)
Cell
, vol.127
, pp. 1309-1321
-
-
Doebley, J.1
Gaut, B.S.2
Smith, B.D.3
-
9
-
-
0032125381
-
Transcriptional regulators and the evolution of plant form
-
Doebley J, Lukens L (1998) Transcriptional regulators and the evolution of plant form. Plant Cell 10: 1075-1082
-
(1998)
Plant Cell
, vol.10
, pp. 1075-1082
-
-
Doebley, J.1
Lukens, L.2
-
10
-
-
0025943740
-
Genetic-analysis of the morphological differences between maize and teosinte
-
Doebley J, Stec A (1991) Genetic-analysis of the morphological differences between maize and teosinte. Genetics 129: 285-295
-
(1991)
Genetics
, vol.129
, pp. 285-295
-
-
Doebley, J.1
Stec, A.2
-
11
-
-
0029166837
-
Teosinte branched1 and the origin of maize: Evidence for epistasis and the evolution of dominance
-
Doebley J, Stec A, Gustus C (1995) Teosinte branched1 and the origin of maize: evidence for epistasis and the evolution of dominance. Genetics 141: 333-346
-
(1995)
Genetics
, vol.141
, pp. 333-346
-
-
Doebley, J.1
Stec, A.2
Gustus, C.3
-
12
-
-
0030893329
-
The evolution of apical dominance in maize
-
Doebley J, Stec A, Hubbard L (1997) The evolution of apical dominance in maize. Nature 386: 485-488
-
(1997)
Nature
, vol.386
, pp. 485-488
-
-
Doebley, J.1
Stec, A.2
Hubbard, L.3
-
13
-
-
0025637611
-
Genetic and morphological analysis of a maize teosinte F2 population - implications for the origin of maize
-
Doebley J, Stec A, Wendel J, Edwards M (1990) Genetic and morphological analysis of a maize teosinte F2 population - implications for the origin of maize. Proc Natl Acad Sci USA 87: 9888-9892
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 9888-9892
-
-
Doebley, J.1
Stec, A.2
Wendel, J.3
Edwards, M.4
-
15
-
-
0033392770
-
Post-green revolution trends in yield potential of temperate maize in the north-central United States
-
Duvick DN, Cassman KG (1999) Post-green revolution trends in yield potential of temperate maize in the north-central United States. Crop Sci 39: 1622-1630
-
(1999)
Crop Sci
, vol.39
, pp. 1622-1630
-
-
Duvick, D.N.1
Cassman, K.G.2
-
16
-
-
33846518736
-
Nearly identical paralogs: Implications for maize (Zea mays L.) genome evolution
-
Emrich SJ, Li L, Wen TJ, Yandeau-Nelson MD, Fu Y, Guo L, Chou HH, Aluru S, Ashlock DA, Schnable PS (2007) Nearly identical paralogs: implications for maize (Zea mays L.) genome evolution. Genetics 175: 429-439
-
(2007)
Genetics
, vol.175
, pp. 429-439
-
-
Emrich, S.J.1
Li, L.2
Wen, T.J.3
Yandeau-Nelson, M.D.4
Fu, Y.5
Guo, L.6
Chou, H.H.7
Aluru, S.8
Ashlock, D.A.9
Schnable, P.S.10
-
17
-
-
0038418048
-
Assessing the impact of the green revolution, 1960 to 2000
-
Evenson RE, Gollin D (2003) Assessing the impact of the green revolution, 1960 to 2000. Science 300: 758-762
-
(2003)
Science
, vol.300
, pp. 758-762
-
-
Evenson, R.E.1
Gollin, D.2
-
18
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194
-
(1998)
Genome Res
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
19
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185
-
(1998)
Genome Res
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
20
-
-
0032516006
-
Investigation of the bottleneck leading to the domestication of maize
-
Eyre-Walker A, Gaut RL, Hilton H, Feldman DL, Gaut BS (1998) Investigation of the bottleneck leading to the domestication of maize. Proc Natl Acad Sci USA 95: 4441-4446
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 4441-4446
-
-
Eyre-Walker, A.1
Gaut, R.L.2
Hilton, H.3
Feldman, D.L.4
Gaut, B.S.5
-
21
-
-
10344224540
-
The role of barren stalk1 in the architecture of maize
-
Gallavotti A, Zhao Q, Kyozuka J, Meeley RB, Ritter M, Doebley JF, Pe ME, Schmidt RJ (2004) The role of barren stalk1 in the architecture of maize. Nature 432: 630-635
-
(2004)
Nature
, vol.432
, pp. 630-635
-
-
Gallavotti, A.1
Zhao, Q.2
Kyozuka, J.3
Meeley, R.B.4
Ritter, M.5
Doebley, J.F.6
Pe, M.E.7
Schmidt, R.J.8
-
22
-
-
34447269986
-
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98
-
Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98
-
-
-
-
23
-
-
34250140738
-
Das domestikationssyndrom
-
Hammer K (1984) Das domestikationssyndrom. Kulturpflanze 32: 11-34
-
(1984)
Kulturpflanze
, vol.32
, pp. 11-34
-
-
Hammer, K.1
-
24
-
-
0029891606
-
Evolution of anthocyanin biosynthesis in maize kernels: The role of regulatory and enzymatic loci
-
Hanson MA, Gaut BS, Stec AO, Fuerstenberg SI, Goodman MM, Coe EH, Doebley JF (1996) Evolution of anthocyanin biosynthesis in maize kernels: the role of regulatory and enzymatic loci. Genetics 143: 1395-1407
-
(1996)
Genetics
, vol.143
, pp. 1395-1407
-
-
Hanson, M.A.1
Gaut, B.S.2
Stec, A.O.3
Fuerstenberg, S.I.4
Goodman, M.M.5
Coe, E.H.6
Doebley, J.F.7
-
25
-
-
0004281722
-
-
Ed 2. American Society of Agronomy, Madison, WI
-
Harlan JR (1992) Crops and Man, Ed 2. American Society of Agronomy, Madison, WI
-
(1992)
Crops and Man
-
-
Harlan, J.R.1
-
26
-
-
0023339852
-
A test of neutral molecular evolution based on nucleotide data
-
Hudson RR, Kreitman M, Aguade M (1987) A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159
-
(1987)
Genetics
, vol.116
, pp. 153-159
-
-
Hudson, R.R.1
Kreitman, M.2
Aguade, M.3
-
27
-
-
0242497658
-
Early allelic selection in maize as revealed by ancient DNA
-
Jaenicke-Despres V, Buckler ES, Smith BD, Gilbert MT, Cooper A, Doebley J, Paabo S (2003) Early allelic selection in maize as revealed by ancient DNA. Science 302: 1206-1208
-
(2003)
Science
, vol.302
, pp. 1206-1208
-
-
Jaenicke-Despres, V.1
Buckler, E.S.2
Smith, B.D.3
Gilbert, M.T.4
Cooper, A.5
Doebley, J.6
Paabo, S.7
-
28
-
-
0035490936
-
Green revolution: The way forward
-
Khush GS (2001) Green revolution: the way forward. Nat Rev Genet 2: 815-822
-
(2001)
Nat Rev Genet
, vol.2
, pp. 815-822
-
-
Khush, G.S.1
-
29
-
-
0347579843
-
Microsatellites in Zea - variability, patterns of mutations, and use for evolutionary studies
-
Matsuoka Y, Mitchell SE, Kresovich S, Goodman M, Doebley J (2002) Microsatellites in Zea - variability, patterns of mutations, and use for evolutionary studies. Theor Appl Genet 104: 436-450
-
(2002)
Theor Appl Genet
, vol.104
, pp. 436-450
-
-
Matsuoka, Y.1
Mitchell, S.E.2
Kresovich, S.3
Goodman, M.4
Doebley, J.5
-
30
-
-
8844221323
-
Diversifying selection in plant breeding
-
McCouch S (2004) Diversifying selection in plant breeding. PLoS Biol 2: e347
-
(2004)
PLoS Biol
, vol.2
-
-
McCouch, S.1
-
31
-
-
0028370714
-
Plant evolution: De-evolution and re-evolution of maize
-
Meyerowitz EM (1994) Plant evolution: de-evolution and re-evolution of maize. Curr Biol 4: 127-130
-
(1994)
Curr Biol
, vol.4
, pp. 127-130
-
-
Meyerowitz, E.M.1
-
32
-
-
13444282474
-
InterPro, progress and status in 2005
-
Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, et al (2005) InterPro, progress and status in 2005. Nucleic Acids Res 33: D201-D205
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Mulder, N.J.1
Apweiler, R.2
Attwood, T.K.3
Bairoch, A.4
Bateman, A.5
Binns, D.6
Bradley, P.7
Bork, P.8
Bucher, P.9
Cerutti, L.10
-
33
-
-
0034772011
-
fw2.2 directly affects the size of developing tomato fruit, with secondary effects on fruit number and photosynthate distribution
-
Nesbitt TC, Tanksley SD (2001) fw2.2 directly affects the size of developing tomato fruit, with secondary effects on fruit number and photosynthate distribution. Plant Physiol 127: 575-583
-
(2001)
Plant Physiol
, vol.127
, pp. 575-583
-
-
Nesbitt, T.C.1
Tanksley, S.D.2
-
34
-
-
0029133699
-
Convergent domestication of cereal crops by independent mutations at corresponding genetic loci
-
Paterson AH, Lin YR, Li Z, Schertz KF, Doebley JF, Pinson SRM, Liu SC, Stansel JW, Irvine JE (1995) Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1718
-
(1995)
Science
, vol.269
, pp. 1714-1718
-
-
Paterson, A.H.1
Lin, Y.R.2
Li, Z.3
Schertz, K.F.4
Doebley, J.F.5
Pinson, S.R.M.6
Liu, S.C.7
Stansel, J.W.8
Irvine, J.E.9
-
35
-
-
0035453312
-
Common pitfalls in bioinformatics-based analyses: Look before you leap
-
Peri S, Ibarrola N, Blagoev B, Mann M, Pandey A (2001) Common pitfalls in bioinformatics-based analyses: look before you leap. Trends Genet 17: 541-545
-
(2001)
Trends Genet
, vol.17
, pp. 541-545
-
-
Peri, S.1
Ibarrola, N.2
Blagoev, B.3
Mann, M.4
Pandey, A.5
-
36
-
-
23144458473
-
InterProScan: Protein domains identifier
-
Quevillon E, Silventoinen V, Pillai S, Harte N, Mulder N, Apweiler R, Lopez R (2005) InterProScan: protein domains identifier. Nucleic Acids Res 33: W116-W120
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Quevillon, E.1
Silventoinen, V.2
Pillai, S.3
Harte, N.4
Mulder, N.5
Apweiler, R.6
Lopez, R.7
-
37
-
-
34447276219
-
Plant domestication, a unique opportunity to identify the genetic basis of adaptation
-
Ross-Ibarra J, Morrell PL, Gaut BS (2007) Plant domestication, a unique opportunity to identify the genetic basis of adaptation. Proc Natl Acad Sci USA 104: 8641-8648
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 8641-8648
-
-
Ross-Ibarra, J.1
Morrell, P.L.2
Gaut, B.S.3
-
38
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sanchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sanchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
39
-
-
0034758672
-
Statistical power when testing for genetic differentiation
-
Ryman N, Jorde PE (2001) Statistical power when testing for genetic differentiation. Mol Ecol 10: 2361-2373
-
(2001)
Mol Ecol
, vol.10
, pp. 2361-2373
-
-
Ryman, N.1
Jorde, P.E.2
-
40
-
-
33644766926
-
Molecular characterization of the major wheat domestication gene Q
-
Simons KJ, Fellers JP, Trick HN, Zhang Z, Tai YS, Gill BS, Faris JD (2006) Molecular characterization of the major wheat domestication gene Q. Genetics 172: 547-555
-
(2006)
Genetics
, vol.172
, pp. 547-555
-
-
Simons, K.J.1
Fellers, J.P.2
Trick, H.N.3
Zhang, Z.4
Tai, Y.S.5
Gill, B.S.6
Faris, J.D.7
-
41
-
-
32244444365
-
Early maize (Zea mays L.) cultivation in Mexico: Dating sedimentary pollen records and its implications
-
Sluyter A, Dominguez G (2006) Early maize (Zea mays L.) cultivation in Mexico: dating sedimentary pollen records and its implications. Proc Natl Acad Sci USA 103: 1147-1151
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 1147-1151
-
-
Sluyter, A.1
Dominguez, G.2
-
43
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
44
-
-
0035979181
-
Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
-
Tenaillon M, Sawkins MC, Long AD, Gaut RL, Doebley JF, Gaut BS (2001) Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA 98: 9161-9166
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 9161-9166
-
-
Tenaillon, M.1
Sawkins, M.C.2
Long, A.D.3
Gaut, R.L.4
Doebley, J.F.5
Gaut, B.S.6
-
45
-
-
3042595170
-
Selection versus demography: A multilocus investigation of the domestication process in maize
-
Tenaillon MI, U'Ren J, Tenaillon O, Gaut BS (2004) Selection versus demography: a multilocus investigation of the domestication process in maize. Mol Biol Evol 21: 1214-1225
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1214-1225
-
-
Tenaillon, M.I.1
U'Ren, J.2
Tenaillon, O.3
Gaut, B.S.4
-
46
-
-
0027968068
-
Clustal W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
47
-
-
23644434862
-
The origin of the naked grains of maize
-
Wang H, Nussbaum-Wagler T, Li B, Zhao Q, Vigouroux Y, Faller M, Bomblies K, Lukens L, Doebley JF (2005) The origin of the naked grains of maize. Nature 436: 714-719
-
(2005)
Nature
, vol.436
, pp. 714-719
-
-
Wang, H.1
Nussbaum-Wagler, T.2
Li, B.3
Zhao, Q.4
Vigouroux, Y.5
Faller, M.6
Bomblies, K.7
Lukens, L.8
Doebley, J.F.9
-
48
-
-
19744371138
-
The effects of artificial selection of the maize genome
-
Wright SI, Bi IV, Schroeder SG, Yamasaki M, Doebley JF, McMullen MD, Gaut BS (2005) The effects of artificial selection of the maize genome. Science 308: 1310-1314
-
(2005)
Science
, vol.308
, pp. 1310-1314
-
-
Wright, S.I.1
Bi, I.V.2
Schroeder, S.G.3
Yamasaki, M.4
Doebley, J.F.5
McMullen, M.D.6
Gaut, B.S.7
-
49
-
-
8544246487
-
The HKA test revisited: A maximum-likelihood-ratio test of the standard neutral model
-
Wright SI, Charlesworth B (2004) The HKA test revisited: a maximum-likelihood-ratio test of the standard neutral model. Genetics 168: 1071-1076
-
(2004)
Genetics
, vol.168
, pp. 1071-1076
-
-
Wright, S.I.1
Charlesworth, B.2
-
50
-
-
14544306215
-
Molecular population genetics and the search for adaptive evolution in plants
-
Wright SI, Gaut BS (2005) Molecular population genetics and the search for adaptive evolution in plants. Mol Biol Evol 22: 506-519
-
(2005)
Mol Biol Evol
, vol.22
, pp. 506-519
-
-
Wright, S.I.1
Gaut, B.S.2
-
51
-
-
33344469072
-
A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement
-
Yamasaki M, Tenaillon MI, Bi IV, Schroeder SG, Sanchez-Villeda H, Doebley JF, Gaut BS, McMullen MD (2005) A large-scale screen for artificial selection in maize identifies candidate agronomic loci for domestication and crop improvement. Plant Cell 17: 2859-2872
-
(2005)
Plant Cell
, vol.17
, pp. 2859-2872
-
-
Yamasaki, M.1
Tenaillon, M.I.2
Bi, I.V.3
Schroeder, S.G.4
Sanchez-Villeda, H.5
Doebley, J.F.6
Gaut, B.S.7
McMullen, M.D.8
|