Tissue integrity and RNA quality of laser microdissected phloem of potato

Planta

Volumn 226, Issue 3, 2007, Pages 797-803

  Yu, YueYue ^a   Lashbrook, C C ^a   Hannapel, David J ^a  

^a IOWA STATE UNIVERSITY   (United States)

Author keywords

Microdissection; Phloem; Plant stem; RNA; Tuberization; Vascular tissue

Indexed keywords

MESSENGER RNA; PLANT RNA;

ARTICLE; CYTOLOGY; GENE EXPRESSION REGULATION; GENETICS; LASER; METABOLISM; MICRODISSECTION; PHLOEM; PLANT STEM; POTATO;

GENE EXPRESSION REGULATION, PLANT; LASERS; MICRODISSECTION; PHLOEM; PLANT STEMS; RNA, MESSENGER; RNA, PLANT; SOLANUM TUBEROSUM;

SOLANUM TUBEROSUM; TUBER (TRUFFLE);

EID: 34447258372     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-007-0509-z     Document Type: Article

References (36)

1. Angeles G, Berrio-Sierra J, Joseleau J-P, Lorimier P, Lefèbvre A, Ruel K (2006) Preparative laser capture microdissection and single-pot cell wall material preparation: a novel method for tissue-specific analysis. Planta 224:228-232
2. Asano T, MasumuraT, Kusano H, Kikuchi S, Kurita A, Shimada H, Kadowaki K (2002) Construction of a specialized cDNA library from plant cells isolated by laser capture microdissection: toward comprehensive analysis of the genes expressed in the rice phloem. Plant J 32:401-408
3. Banerjee AK, Prat S, Hannapel DJ (2006a) Efficient production of transgenic potato (S.tuberosum. Lssp. andigena) plants via Agrobacterium tumefaciens-mediated transformation. Plant Sci 170:732-738
4. Banerjee AK, Chatterjee M, Yu YY, Suh SG, Miller WA, Hannapel DJ (2006b) Dynamic of a mobile RNA of potato involved in a long-distance signaling pathway. Plant Cell 18:3443-3457
5. Bhatt AM, Etchells JP, Canales C, Lagodienko A, Dickinson H (2004) VAAMANA-a BEL1-like homeodomain protein, interacts with KNOX proteins BP and STM and regulates inflorescence stem growth in Arabidopsis. Gene 328:103-111
6. Bova GS, Eltoum IA, Kiernan JA, Siegal GP, Frost AR, Best CJ, Gillespie JW, Su GH, Emmert-Buck MR (2005) Optimal molecular profiling of tissue and tissue components: defining the best processing and microdissection methods for biomedical applications. Mol Biotech 29:119-152
7. Cai S, Lashbrook CC (2006) Laser capture microdissection of plant cells from tape-transferred paraffin sections promotes recovery of structurally intact RNA for global gene profiling. Plant J 48:628-637
8. Chen H, Rosin FM, Prat S, Hannapel DJ (2003) Interacting transcription factors from the TALE superclass regulate tuber formation. Plant Physiol 132:1391-1404
9. Chen H, Banerjee AK, Hannapel DJ (2004) The tandem complex of BEL and KNOX partners is required for transcriptional repression of ga20ox1. Plant J 38:276-284
10. Citovsky V, Zambryski P (2000) Systemic transport of RNA in plants. Trends Plant Sci 5:52-54
11. Day RC, McNoe LA, Macknight RC (2007) Transcript analysis of laser microdissected plant cells. Physiol Plant 129:267-282
12. Emmert-Buck MR, Bonner RF, Smith PD, Chuaqui RF, Zhuang Z, Goldstein SR, Weiss RA, Liotta LA (1996) Laser capture microdissection. Science 274:998-1001
13. Galbraith DW, K Birnbaum (2006) Global studies of cell type-specific gene expression in plants. Annu Rev Plant Biol 57:451-475
14. Hake S, Smith HM, Holtan H, Magnani E, Mele G, Ramirez J (2004) The role of knox genes in plant development. Annu Rev Cell Dev Biol 20:125-151
15. Huang T, Bohlenius H, Eriksson S, Parcy F, Nilsson O (2005) The mRNA of the Arabidopsis gene FT moves from leaf to shoot apex and induces flowering. Science 309:1694-1696
16. Inada N, Wildermuth MC (2005) Novel tissue preparation method and cell-specific marker for laser microdissection of Arabidopsis mature leaf. Planta 221:9-16
17. Ivashikina N, Deeken R, Ache P, Kranz E, Pommerrenig B, Sauer N, Hedrich R (2003) Isolation of AtSUC2 promoter-GFP-marked companion cells for patch-clamp studies and expression profiling. Plant J 36:931-945
18. Kanrar S, Onguka O, Smith HM (2006) Arabidopsis inflorescence architecture requires the activities of KNOX-BELL homeodomain heterodimers. Planta 224:2263-2273
19. Kerk NM, Ceserani T, Tausta SL, Sussex IM, Nelson TM (2003) Laser capture microdissection of cells from plant tissues. Plant Physiol 132:27-35
20. Kim M, Canio W, Kessler S, Sinha N (2001) Developmental changes due to long-distance movement of a homeobox fusion transcript in tomato. Science 293:287-289
21. Lough TJ, Lucas WJ (2006) Integrative plant biology: role of phloem long-distance macromolecular trafficking. Annu Rev Plant Biol 7:203-232
22. Lucas WJ, Yoo BC, Kragler F (2001) RNA as a long-distance information macromolecule in plants. Nat Rev Mol Cell Biol 2:849-857
23. Micke P, östman A, Lundeberg J, Ponten F (2004) Laser-assisted cell microdissection using the PALM system. Methods Mol Biol 293:151-166
24. Nakazono M, Qiu F, Borsuk LA, Schnable PS (2003) Laser capture microdissection, a tool for the global analysis of gene expression in specific plant cell types: identification of genes expressed differentially in epidermal cells or vascular tissues of maize. Plant Cell 15:583-596
25. Nelson T, Tausta SL, Gandotra N, Liu T (2006) Laser microdissection of plant tissue: what you see is what you get. Annu Rev Plant Biol 57:181-220
26. Niyaz Y, Stich M, Sagmuller B, Burgemeister R, Friedemann G, Sauer U, Gangnus R, Schutze K (2005) Noncontact laser microdissection and pressure catapulting: sample preparation for genomic, transcriptomic, and proteomic analysis. Methods Mol Med 114:1-24
27. Ohtsu K, Takahashi H, Schnable PS, Nakazono M (2007) Cell type-specific gene expression profiling in plants by using a combination of laser microdissection and high-throughput technologies. Plant Cell Physiol. 48:3-7
28. Pommerrenig B, Barth I, Niedermeier M, Kopp S, Schmid J, Dwyer RA, McNair RJ, Klebl F, Sauer N (2006) Common plantain. A collection of expressed sequence tags from vascular tissue and a simple and efficient transformation method. Plant Physiol 142:1427-1441
29. Rosin FM, Hart JK, Horner HT, Davies PJ, Hannapel DJ (2003) Overexpression of a Knotted-like homeobox gene of potato alters vegetative development by decreasing gibberellin accumulation. Plant Physiol 132:106-117
30. Ruiz-Medrano R, Xoconostle-Cazares B, Lucas WJ (1999) Phloem long-distance transport of CmNACP mRNA: implications for supracellular regulation in plants. Develop 126:4405-4419
31. Smith HM, Campbell BC, Hake S (2004) Competence to respond to floral inductive signals requires the homeobox genes PENNYWISE and POUND-FOOLISH. Curr Biol 14:812-817
32. Thompson GA, Schulz A (1999) Macromolecular trafficking in the phloem. Trends Plant Sci 4:354-360
33. van Bel AJ, Ehlers K, Knoblauch M (2002) Sieve elements caught in the act. Trends Plant Sci 7:126-132
34. Vilaine F, Palauqui JC, Amselem J, Kusiak C, Lemoine R, Dinant S (2003) Towards deciphering phloem: a transcriptome analysis of the phloem of Apium graveolens. Plant J 36:67-81
35. Wu Y, AC Machado RG White DJ Llewellyn, Dennis ES (2006) Expression profiling identifies genes expressed early during lint fibre initiation in cotton. Plant Cell Physiol 47:107-127
36. Zhao C, Craig JC, Petzold HE, Dickerman AW, Beers EP (2005) The xylem and phloem transcriptomes from secondary tissues of the Arabidopsis root-hypocotyl. Plant Physiol 138:803-818