-
1
-
-
1842610529
-
Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein
-
Babitzke P. Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein. Curr. Opin. Microbiol. 7 (2004) 132-139
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 132-139
-
-
Babitzke, P.1
-
2
-
-
29144475324
-
Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis
-
Gollnick P., Babitzke P., Antson A., and Yanofsky C. Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis. Annu. Rev. Genet. 39 (2005) 47-68
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 47-68
-
-
Gollnick, P.1
Babitzke, P.2
Antson, A.3
Yanofsky, C.4
-
3
-
-
0028217753
-
Regulation of the Bacillus subtilis trp operon by an RNA-binding protein
-
Gollnick P. Regulation of the Bacillus subtilis trp operon by an RNA-binding protein. Mol. Microbiol. 11 (1994) 991-997
-
(1994)
Mol. Microbiol.
, vol.11
, pp. 991-997
-
-
Gollnick, P.1
-
4
-
-
0032493809
-
trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis
-
Du H., and Babitzke P. trp RNA-binding attenuation protein-mediated long distance RNA refolding regulates translation of trpE in Bacillus subtilis. J. Biol. Chem. 273 (1998) 20494-20503
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 20494-20503
-
-
Du, H.1
Babitzke, P.2
-
5
-
-
1942521723
-
Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP
-
Snyder D., Lary J., Chen Y., Gollnick P., and Cole J.L. Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP. J. Mol. Biol. 338 (2004) 669-682
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 669-682
-
-
Snyder, D.1
Lary, J.2
Chen, Y.3
Gollnick, P.4
Cole, J.L.5
-
6
-
-
0035860533
-
Inhibition of the B. subtilis regulatory protein TRAP by the TRAP-inhibitory protein, AT
-
Valbuzzi A., and Yanofsky C. Inhibition of the B. subtilis regulatory protein TRAP by the TRAP-inhibitory protein, AT. Science 293 (2001) 2057-2059
-
(2001)
Science
, vol.293
, pp. 2057-2059
-
-
Valbuzzi, A.1
Yanofsky, C.2
-
7
-
-
29144481616
-
Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction
-
Shevtsov M.B., Chen Y., Gollnick P., and Antson A.A. Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction. Proc. Natl Acad. Sci. USA 102 (2005) 17600-17605
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 17600-17605
-
-
Shevtsov, M.B.1
Chen, Y.2
Gollnick, P.3
Antson, A.A.4
-
8
-
-
0028871292
-
trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon
-
Merino E., Babitzke P., and Yanofsky C. trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon. J. Bacteriol. 177 (1995) 6362-6370
-
(1995)
J. Bacteriol.
, vol.177
, pp. 6362-6370
-
-
Merino, E.1
Babitzke, P.2
Yanofsky, C.3
-
9
-
-
0034115502
-
A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport
-
Sarsero J.P., Merino E., and Yanofsky C. A Bacillus subtilis gene of previously unknown function, yhaG, is translationally regulated by tryptophan-activated TRAP and appears to be involved in tryptophan transport. J. Bacteriol. 182 (2000) 2329-2331
-
(2000)
J. Bacteriol.
, vol.182
, pp. 2329-2331
-
-
Sarsero, J.P.1
Merino, E.2
Yanofsky, C.3
-
10
-
-
0347915671
-
The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding
-
Yakhnin H., Zhang H., Yakhnin A.V., and Babitzke P. The trp RNA-binding attenuation protein of Bacillus subtilis regulates translation of the tryptophan transport gene trpP (yhaG) by blocking ribosome binding. J. Bacteriol. 186 (2004) 278-286
-
(2004)
J. Bacteriol.
, vol.186
, pp. 278-286
-
-
Yakhnin, H.1
Zhang, H.2
Yakhnin, A.V.3
Babitzke, P.4
-
11
-
-
33747074853
-
The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding
-
Yakhnin H., Yakhnin A.V., and Babitzke P. The trp RNA-binding attenuation protein (TRAP) of Bacillus subtilis regulates translation initiation of ycbK, a gene encoding a putative efflux protein, by blocking ribosome binding. Mol. Microbiol. 61 (2006) 1252-1266
-
(2006)
Mol. Microbiol.
, vol.61
, pp. 1252-1266
-
-
Yakhnin, H.1
Yakhnin, A.V.2
Babitzke, P.3
-
12
-
-
33846639175
-
Translation control of trpG from transcripts originating from the folate operon promoter of Bacillus subtilis is influenced by translation-mediated displacement of bound TRAP, while translation control of transcripts originating from a newly identified trpG promoter is not
-
Yakhnin H., Yakhnin A.V., and Babitzke P. Translation control of trpG from transcripts originating from the folate operon promoter of Bacillus subtilis is influenced by translation-mediated displacement of bound TRAP, while translation control of transcripts originating from a newly identified trpG promoter is not. J. Bacteriol. 189 (2007) 872-879
-
(2007)
J. Bacteriol.
, vol.189
, pp. 872-879
-
-
Yakhnin, H.1
Yakhnin, A.V.2
Babitzke, P.3
-
13
-
-
0028063588
-
11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis
-
Antson A.A., Brzozowski A.M., Dodson E.J., Dauter Z., Wilson K.S., Kurecki T., et al. 11-fold symmetry of the trp RNA-binding attenuation protein (TRAP) from Bacillus subtilis determined by X-ray analysis. J. Mol. Biol. 244 (1994) 1-5
-
(1994)
J. Mol. Biol.
, vol.244
, pp. 1-5
-
-
Antson, A.A.1
Brzozowski, A.M.2
Dodson, E.J.3
Dauter, Z.4
Wilson, K.S.5
Kurecki, T.6
-
14
-
-
0033575897
-
Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA
-
Antson A.A., Dodson E.J., Dodson G., Greaves R.B., Chen X., and Gollnick P. Structure of the trp RNA-binding attenuation protein, TRAP, bound to RNA. Nature 401 (1999) 235-242
-
(1999)
Nature
, vol.401
, pp. 235-242
-
-
Antson, A.A.1
Dodson, E.J.2
Dodson, G.3
Greaves, R.B.4
Chen, X.5
Gollnick, P.6
-
15
-
-
0028964336
-
The structure of trp RNA-binding attenuation protein
-
Antson A.A., Otridge J., Brzozowski A.M., Dodson E.J., Dodson G.G., Wilson K.S., et al. The structure of trp RNA-binding attenuation protein. Nature 374 (1995) 693-700
-
(1995)
Nature
, vol.374
, pp. 693-700
-
-
Antson, A.A.1
Otridge, J.2
Brzozowski, A.M.3
Dodson, E.J.4
Dodson, G.G.5
Wilson, K.S.6
-
16
-
-
0033022150
-
Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus
-
Chen X., Antson A.A., Yang M., Li P., Baumann C., Dodson E.J., et al. Regulatory features of the trp operon and the crystal structure of the trp RNA-binding attenuation protein from Bacillus stearothermophilus. J. Mol. Biol. 289 (1999) 1003-1016
-
(1999)
J. Mol. Biol.
, vol.289
, pp. 1003-1016
-
-
Chen, X.1
Antson, A.A.2
Yang, M.3
Li, P.4
Baumann, C.5
Dodson, E.J.6
-
17
-
-
0029997474
-
1H-NMR characterization of L-tryptophan binding to TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis
-
1H-NMR characterization of L-tryptophan binding to TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis. Biochem. J. 315 (1996) 895-900
-
(1996)
Biochem. J.
, vol.315
, pp. 895-900
-
-
Ramesh, V.1
Brown, T.2
-
18
-
-
0036416144
-
TROSY-NMR studies of the 91 kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility
-
McElroy C., Manfredo A., Wendt A., Gollnick P., and Foster M. TROSY-NMR studies of the 91 kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility. J. Mol. Biol. 323 (2002) 463-473
-
(2002)
J. Mol. Biol.
, vol.323
, pp. 463-473
-
-
McElroy, C.1
Manfredo, A.2
Wendt, A.3
Gollnick, P.4
Foster, M.5
-
19
-
-
2442527851
-
Tandem mass spectrometry defines the stoichiometry and quaternary structural arrangement of tryptophan molecules in the multiprotein complex TRAP
-
McCammon M.G., Hernandez H., Sobott F., and Robinson C.V. Tandem mass spectrometry defines the stoichiometry and quaternary structural arrangement of tryptophan molecules in the multiprotein complex TRAP. J. Am. Chem. Soc. 126 (2004) 5950-5951
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 5950-5951
-
-
McCammon, M.G.1
Hernandez, H.2
Sobott, F.3
Robinson, C.V.4
-
20
-
-
28844474910
-
Evidence for macromolecular protein rings in the absence of bulk water
-
Ruotolo B.T., Giles K., Campuzano I., Sandercock A.M., Bateman R.H., and Robinson C.V. Evidence for macromolecular protein rings in the absence of bulk water. Science 310 (2005) 1658-1661
-
(2005)
Science
, vol.310
, pp. 1658-1661
-
-
Ruotolo, B.T.1
Giles, K.2
Campuzano, I.3
Sandercock, A.M.4
Bateman, R.H.5
Robinson, C.V.6
-
21
-
-
0031214216
-
Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding
-
Yang M., Chen X., Militello K., Hoffman R., Fernandez B., Baumann C., and Gollnick P. Alanine-scanning mutagenesis of Bacillus subtilis trp RNA-binding attenuation protein (TRAP) reveals residues involved in tryptophan binding and RNA binding. J. Mol. Biol. 270 (1997) 696-710
-
(1997)
J. Mol. Biol.
, vol.270
, pp. 696-710
-
-
Yang, M.1
Chen, X.2
Militello, K.3
Hoffman, R.4
Fernandez, B.5
Baumann, C.6
Gollnick, P.7
-
22
-
-
0034635443
-
Effects of mutations in the L-tryptophan binding pocket of the Trp RNA-binding attenuation protein of Bacillus subtilis
-
Yakhnin A.V., Trimble J.J., Chiaro C.R., and Babitzke P. Effects of mutations in the L-tryptophan binding pocket of the Trp RNA-binding attenuation protein of Bacillus subtilis. J. Biol. Chem. 275 (2000) 4519-4524
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 4519-4524
-
-
Yakhnin, A.V.1
Trimble, J.J.2
Chiaro, C.R.3
Babitzke, P.4
-
23
-
-
1542705098
-
Characterization of a trp RNA-binding attenuation protein (TRAP) mutant with tryptophan independent RNA binding activity
-
Li P.T., and Gollnick P. Characterization of a trp RNA-binding attenuation protein (TRAP) mutant with tryptophan independent RNA binding activity. J. Mol. Biol. 335 (2004) 707-722
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 707-722
-
-
Li, P.T.1
Gollnick, P.2
-
24
-
-
0037023767
-
Creating hetero-11-mers composed of wild-type and mutant subunits to study RNA binding to TRAP
-
Li P.T., Scott D.J., and Gollnick P. Creating hetero-11-mers composed of wild-type and mutant subunits to study RNA binding to TRAP. J. Biol. Chem. 277 (2002) 11838-11844
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 11838-11844
-
-
Li, P.T.1
Scott, D.J.2
Gollnick, P.3
-
25
-
-
33746906309
-
Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein
-
McElroy C.A., Manfredo A., Gollnick P., and Foster M.P. Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein. Biochemistry 45 (2006) 7844-7853
-
(2006)
Biochemistry
, vol.45
, pp. 7844-7853
-
-
McElroy, C.A.1
Manfredo, A.2
Gollnick, P.3
Foster, M.P.4
-
26
-
-
0027458419
-
Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein
-
Babitzke P., and Yanofsky C. Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein. Proc. Natl Acad. Sci. USA 90 (1993) 133-137
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 133-137
-
-
Babitzke, P.1
Yanofsky, C.2
-
27
-
-
0027509047
-
MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan-dependent manner
-
Otridge J., and Gollnick P. MtrB from Bacillus subtilis binds specifically to trp leader RNA in a tryptophan-dependent manner. Proc. Natl Acad. Sci. USA 90 (1993) 128-132
-
(1993)
Proc. Natl Acad. Sci. USA
, vol.90
, pp. 128-132
-
-
Otridge, J.1
Gollnick, P.2
-
28
-
-
27744469829
-
Scoring functions-the first 100 years
-
Tame J.R.H. Scoring functions-the first 100 years. J. Comput. Aided Mol. Des. 19 (2005) 445-451
-
(2005)
J. Comput. Aided Mol. Des.
, vol.19
, pp. 445-451
-
-
Tame, J.R.H.1
-
30
-
-
31044447930
-
Determinants of cooperativity and site selectivity in human ileal bile acid binding protein
-
Toke O., Monsey J.D., DeKoster G.T., Tochtrop G.P., Tang C., and Cistola D.P. Determinants of cooperativity and site selectivity in human ileal bile acid binding protein. Biochemistry 45 (2006) 727-737
-
(2006)
Biochemistry
, vol.45
, pp. 727-737
-
-
Toke, O.1
Monsey, J.D.2
DeKoster, G.T.3
Tochtrop, G.P.4
Tang, C.5
Cistola, D.P.6
-
32
-
-
0023636673
-
Uptake of cell wall peptides by Salmonella typhimurium and Escherichia coli
-
Goodell E.W., and Higgins C.F. Uptake of cell wall peptides by Salmonella typhimurium and Escherichia coli. J. Bacteriol. 169 (1987) 3861-3865
-
(1987)
J. Bacteriol.
, vol.169
, pp. 3861-3865
-
-
Goodell, E.W.1
Higgins, C.F.2
-
33
-
-
33646364809
-
Rounding up: engineering 12-membered rings from the cyclic 11-mer TRAP
-
Heddle J.G., Yokoyama T., Yamashita I., Park S.Y., and Tame J.R.H. Rounding up: engineering 12-membered rings from the cyclic 11-mer TRAP. Structure 14 (2006) 925-933
-
(2006)
Structure
, vol.14
, pp. 925-933
-
-
Heddle, J.G.1
Yokoyama, T.2
Yamashita, I.3
Park, S.Y.4
Tame, J.R.H.5
-
34
-
-
0025254630
-
The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis
-
Gollnick P., Ishino S., Kuroda M.I., Henner D.J., and Yanofsky C. The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis. Proc. Natl Acad. Sci. USA 87 (1990) 8726-8730
-
(1990)
Proc. Natl Acad. Sci. USA
, vol.87
, pp. 8726-8730
-
-
Gollnick, P.1
Ishino, S.2
Kuroda, M.I.3
Henner, D.J.4
Yanofsky, C.5
-
35
-
-
0037133162
-
Energetics by NMR: site-specific binding in a positively cooperative system
-
Tochtrop G.P., Richter K., Tang C., Toner J.J., Covey D.F., and Cistola D.P. Energetics by NMR: site-specific binding in a positively cooperative system. Proc. Natl Acad. Sci. USA 99 (2002) 1847-1852
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 1847-1852
-
-
Tochtrop, G.P.1
Richter, K.2
Tang, C.3
Toner, J.J.4
Covey, D.F.5
Cistola, D.P.6
-
36
-
-
12344307390
-
Asymmetric allosteric activation of the symmetric ArgR hexamer
-
Jin L., Xue W.F., Fukayama J.W., Yetter J., Pickering M., and Carey J. Asymmetric allosteric activation of the symmetric ArgR hexamer. J. Mol. Biol. 346 (2005) 43-56
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 43-56
-
-
Jin, L.1
Xue, W.F.2
Fukayama, J.W.3
Yetter, J.4
Pickering, M.5
Carey, J.6
-
37
-
-
0021658956
-
Allostery without conformational change. A plausible model
-
Cooper A., and Dryden D.T. Allostery without conformational change. A plausible model. Eur. Biophys. J. 11 (1984) 103-109
-
(1984)
Eur. Biophys. J.
, vol.11
, pp. 103-109
-
-
Cooper, A.1
Dryden, D.T.2
-
38
-
-
33745571654
-
1.25 Å resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms
-
Park S.Y., Yokoyama T., Shibayama N., Shiro Y., and Tame J.R.H. 1.25 Å resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms. J. Mol. Biol. 360 (2006) 690-701
-
(2006)
J. Mol. Biol.
, vol.360
, pp. 690-701
-
-
Park, S.Y.1
Yokoyama, T.2
Shibayama, N.3
Shiro, Y.4
Tame, J.R.H.5
-
39
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant J.M. Heat capacity and entropy changes in processes involving proteins. Proc. Natl Acad. Sci U S A 74 (1977) 2236-2240
-
(1977)
Proc. Natl Acad. Sci U S A
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
40
-
-
31344438645
-
R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35
-
Yokoyama T., Neya S., Tsuneshige A., Yonetani T., Park S.Y., and Tame J.R.H. R-state haemoglobin with low oxygen affinity: crystal structures of deoxy human and carbonmonoxy horse haemoglobin bound to the effector molecule L35. J. Mol. Biol. 356 (2006) 790-801
-
(2006)
J. Mol. Biol.
, vol.356
, pp. 790-801
-
-
Yokoyama, T.1
Neya, S.2
Tsuneshige, A.3
Yonetani, T.4
Park, S.Y.5
Tame, J.R.H.6
-
41
-
-
0035804929
-
Conformational spread in a ring of proteins: a stochastic approach to allostery
-
Duke T.A., Le Novere N., and Bray D. Conformational spread in a ring of proteins: a stochastic approach to allostery. J. Mol. Biol. 308 (2001) 541-553
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 541-553
-
-
Duke, T.A.1
Le Novere, N.2
Bray, D.3
-
42
-
-
0013882603
-
Hydrogen ion buffers for biological research
-
Good N.E. Hydrogen ion buffers for biological research. Biochemistry 5 (1986) 467-476
-
(1986)
Biochemistry
, vol.5
, pp. 467-476
-
-
Good, N.E.1
-
43
-
-
0003920544
-
-
CRC Press, Boca Raton, FL
-
Fasman G.D. Handbook of Biochemistry and Molecular Biology, Proteins, I. 3 edit. (1976), CRC Press, Boca Raton, FL
-
(1976)
Handbook of Biochemistry and Molecular Biology, Proteins, I. 3 edit.
-
-
Fasman, G.D.1
-
44
-
-
27544437869
-
Investigation of molecular size of transcription factor TFIIE in solution
-
Itoh Y., Unzai S., Sato M., Nagadoi A., Okuda M., Nishimura Y., and Akashi S. Investigation of molecular size of transcription factor TFIIE in solution. Proteins: Struct. Funct. Genet. 61 (2005) 633-641
-
(2005)
Proteins: Struct. Funct. Genet.
, vol.61
, pp. 633-641
-
-
Itoh, Y.1
Unzai, S.2
Sato, M.3
Nagadoi, A.4
Okuda, M.5
Nishimura, Y.6
Akashi, S.7
|