Methods for improving the visualization and deconvolution of isotopic signals

Plant, Cell and Environment

Volumn 30, Issue 8, 2007, Pages 887-891

  Tcherkez, Guillaume ^a,b   Ghashghaie, Jaleh ^b   Griffiths, Howard ^c  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b UNIVERSITÉ PARIS SUD   (France)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Array; Clustering analysis; Fractionation; Stables isotopes; Vectors

Indexed keywords

BIOTRANSFORMATION; CARBON SINK; CLUSTER ANALYSIS; DECONVOLUTION; ISOTOPIC FRACTIONATION; PHYSIOLOGY; STABLE ISOTOPE; VECTOR; VISUALIZATION;

EID: 34447121965     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2007.01687.x     Document Type: Review

References (21)

1. Bowling D.R., McDowel N.G., Bond B.J., Law B.E. Ehleringer J.R. (2002) 13C content of ecosystem respiration is linked to precipitation and vapor pressure deficit. Oecologia 131, 113 124.
2. Dawson T.E., Mambelli S., Plamboeck A.H., Templer P.H. Tu K.P. (2002) Stable isotopes in plant ecology. Annual Review of Ecology and Systematics 33, 507 559.
3. Eisen M.B., Spellman P.T., Brown P.O. Botstein D. (1998) Cluster analysis and display of genome-wide expression patterns. Proceedings of the National Academy of Sciences of the United States of America 95, 14863 14868.
4. Farquhar G.D., Ehleringer J.R. Hubick K.T. (1989) Carbon isotope discrimination and photosynthesis. Annual Review of Plant Physiology and Plant Molecular Biology 40, 503 537.
5. Farquhar G.D., Barbour M.M., Henry B.K. (1998) Interpretation of oxygen isotope composition of leaf material. In Stable Isotopes, Integration of Biological, Ecological and Geochemical Processes (ed. H. Griffiths pp. 27 62. Bios Scientific Publishers, Oxford, UK.
6. Flanagan L.B., Pataki D.E. Ehleringer J.R. (2005) Stable Isotopes and Biosphere- Atmosphere Interactions: Processes and Ecological Controls. Elsevier, San Diego, CA, USA.
7. Gachon C.M.M., Langlois-Meurinne M., Henry Y. Saindrenan P. (2005) Transcriptional co-regulation of secondary metabolism enzymes in Arabidopsis: functional and evolutionary implications. Plant Molecular Biology 58, 229 245.
8. Griffiths H. (1998) Stable Isotopes and the Integration of Biological, Ecological and Geochemical Processes. Bios Scientific Publishers, Oxford, UK.
9. Griffiths H. Jarvis P.G. (2005) The Carbon Balance of Forest Biomes. Taylor and Francis, Oxford, UK.
10. Helliker B. Griffiths H. (2007) Towards a plant-based proxy for the 18O content of atmospheric water vapour. Global Change Biology, in press.
11. Knohl A., Werner R.A., Brand W.A. Buchmann N. (2005) Short term variations in δ13C of ecosystem respiration reveals links between assimilation and respiration in a deciduous forest. Oecologia 142, 70 82.
12. Ledgard S.F., Woo K.C. Bergersen F.J. (1985) Isotopic fractionation during reduction of nitrate and nitrite by extracts of spinach leaves. Australian Journal of Plant Physiology 12, 631 640.
13. MacCarroll D. Loader N.J. (2004) Stable isotopes in tree rings. Quaternary Science Reviews 23, 771 801.
14. Nogués S., Tcherkez G., Cornic G. Ghashghaie J. (2004) Respiratory carbon metabolism following illumination in intact French bean leaves using 12C/13C labelling. Plant Physiology 136, 3245 3254.
15. Schleser G.H., Helle G., Lucke A. Vos H. (1999) Isotope signals as climate proxies: the role of transfer functions in the study of terrestrial archives. Quaternary Science Reviews 18, 927 943.
16. Tcherkez G. Farquhar G.D. (2006) Isotopic fractionation by plant nitrate reductase, twenty years later. Functional Plant Biology 33, 531 537.
17. Tcherkez G., Farquhar G.D., Badeck F. Ghashghaie J. (2004) Theoretical considerations about carbon isotope distribution in glucose of C3 plants. Functional Plant Biology 31, 857 877.
18. Tcherkez G., Farquhar G.D. Andrews T.J. (2006) Despite slow catalysis and confused substrate specificity, all ribulose bisphosphate carboxylases may be nearly perfectly optimized. Proceedings of the National Academy of Sciences of the United States of America 103, 7246 7251.
19. Werner R.A. Schmidt H.L. (2002) The in vivo nitrogen isotope discrimination among organic compounds. Phytochemistry 61, 465 484.
20. West J.B., Bowen G.J., Cerling T.E. Ehleringer J.R. (2006) Stable isotopes as one of nature's ecological recorders. Trends in Ecology & Evolution 21, 408 414.
21. Yakir D. (2002) Sphere of influence. Nature 416, 795.