Evolutionary history of sex-linked mammalian amelogenin genes

Cells Tissues Organs

Volumn 186, Issue 1, 2007, Pages 49-59

  Iwase, Mineyo ^a   Kaneko, Satoko ^a   Kim, Hielim ^a   Satta, Yoko ^a   Takahata, Naoyuki ^a  

^a GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

Amelogenin; Evolution; Mammalian sex chromosomes; Polymorphism; Pseudoautosomal boundary

Indexed keywords

AMELOGENIN; AMINO ACID;

ARTICLE; AUTOSOME; DNA POLYMORPHISM; FEMALE; GENE; GENE EXPRESSION; GENE STRUCTURE; HUMAN; INTRON; MALE; MAMMAL; PRIORITY JOURNAL; RHO GTPASE ACTIVATING PROTEIN 6 GENE; SEX CHROMOSOME; SEX LINKAGE;

AMELOGENIN; ANIMALS; CHROMOSOMES, HUMAN, X; CHROMOSOMES, HUMAN, Y; EVOLUTION, MOLECULAR; FEMALE; GTPASE-ACTIVATING PROTEINS; HUMANS; LINKAGE DISEQUILIBRIUM; MALE; MAMMALS; PHYLOGENY; POLYMORPHISM, GENETIC; RECOMBINATION, GENETIC; SELECTION (GENETICS);

EUTHERIA; MAMMALIA; TETRAPODA;

EID: 34347378875     PISSN: 14226405     EISSN: None     Source Type: Journal    
DOI: 10.1159/000102680     Document Type: Article

References (44)

1. Barrett, J.C., B. Fry, J. Maller, M.J. Daly (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics 21: 263-265.
2. Bhowmick, B.K., Y. Satta, N. Takahata (2006) The origin and evolution of human ampliconic gene families and ampliconic structure. Genome Res, E-pub ahead of print.
3. Chang, Y.M., R. Perumal, P.Y. Keat, R.Y.Y. Yong, D.L.C. Kuehn, L. Burgoyne (2007) A distinct Y-STR haplotype for Amelogenin negative males characterized by a large Yp11.2 (DYS458-MSY1-AMEL-Y) deletion. Forensic Sci Int 166: 115-120.
4. Delgado, S., M. Girondot, J.-Y. Sire (2005) Molecular evolution of amelogenin in mammals. J Mol Evol 60: 12-30.
5. Ebersberger, I., D. Metzler, C. Schwarz, S. Pääbo (2002) Genomewide comparison of DNA sequences between humans and chimpanzees. Am J Hum Genet 70: 1490-1497.
6. Gabriel, S.B., S.F. Schaffner, H. Nguyen, J.M. Moore, J. Roy, B. Blumenstiel, J. Higgins, M. DeFelice, A. Lochner, M. Faggart, S. N. Liu-Cordero, C. Rotimi, A. Adeyemo, R. Cooper, R. Ward, E.S. Lander, M.J. Daly, D. Altshuler (2002) The structure of haplotype blocks in the human genome. Science 296: 2225-2229.
7. Graves, J.A.M. (2002) The rise and fall of SRY. Trends Genet 18: 259-264.
8. Hill, W.G., A. Robertson (1968) Linkage disequilibrium in finite populations. Theor Appl Genet 38: 226-231.
9. Hu, J.C.-C., Y. Yamakoshi, F. Yamakoshi, P.H. Krebsbach, J.P. Simmer (2005) Proteomics and genetics of dental enamel. Cells Tissues Organs 181: 219-231.
10. Hu, J.C.-C., C. Zhang, Q. Qian, O.H. Ryu, J. Moradian-Oldak, A.G. Fincham, J.P. Simmer (1996) Cloning, DNA sequence, and alternative splicing of opossum amelogenin mRNAs. J Dent Res 75: 1728-1734.
11. Huang, W., B.H.-J. Chang, X. Gu, D. Hewett-Emmett, W.-H. Li (1997) Sex differences in mutation rate in higher primates estimated from AMG intron sequences. J Mol Evol 44: 463-465.
12. Ishiyama, M., M. Mikami, H. Shimokawa, S. Oida (1998) Amelogenin protein in tooth germs of the snake Elaphe quadrivirgata, immunohistochemistry, cloning and cDNA sequence. Arch Histol Cytol 61: 467-474.
13. Iwase, M., Y. Satta, Y. Hirai, H. Hirai, H. Imai, N. Takahata (2003) The amelogenin loci span an ancient pseudoautosomal boundary in diverse mammalian species. Proc Natl Acad Sci USA 100: 5258-5263.
14. Iwase, M., Y. Satta, N. Takahata (2001) Sex-chromosomal differentiation and amelogenin genes in mammals. Mol Biol Evol 18: 1601-1603.
15. Jobling, M.A., M.E. Hurles, C. Tyler-Smith (2004) Human Evolutionary Genetics: Origins, Peoples and Disease. New York, Garland Science.
16. Kawasaki, K., T. Suzuki, K.M. Weiss (2004) Genetic basis for the evolution of vertebrate mineralized tissue. Proc Natl Acad Sci USA 101: 11356-11361.
17. Kawasaki, K., K.M. Weiss (2003) Mineralized tissue and vertebrate evolution: the secretory calcium-binding phosphoprotein gene cluster. Proc Natl Acad Sci USA 100: 4060-4065.
18. Kawasaki, K., K.M. Weiss (2006) Evolutionary genetics of vertebrate tissue mineralization: the origin and evolution of the secretory calcium-binding phosphoprotein family. J Exp Zool B Mol Dev Evol 306: 295-316.
19. Kimura, M. (1983) The Neutral Theory of Molecular Evolution. Cambridge, Cambridge University Press.
20. Lagerström, M., N. Dahl, L. Iselius, B. Bäckman, U. Pettersson (1990) Mapping of the gene for X-linked amelogenesis imperfecta by linkage analysis. Am J Hum Genet 46: 120-125.
21. Lahn, B.T., D.C., Page (1999) Four evolutionary strata on the human X chromosome. Science 286: 964-967.
22. Lahn, B.T., N.M. Pearson, K. Jegalian (2001) The human Y chromosome, in the light of evolution. Nat Rev Genet 2: 207-216.
23. Lau, E.C., T.K. Mohandas, L.J. Shapiro, H.C. Slavkin, M.L. Snead (1989) Human and mouse amelogenin gene loci are on the sex chromosomes. Genomics 4: 162-168.
24. Martin, R.D. (1993) Primate origins: plugging the gaps. Nature 363: 223-234.
25. Miyata, T., H. Hayashida, K. Kuma, K. Mitsuyau, T. Yasunaga (1987) Male-driven molecular evolution: a model and nucleotide sequence analysis. Cold Spring Harb Symp Quant Biol 52: 863-867.
26. Nakahori, Y., O. Takenaka, Y. Nakagome (1991) A human X-Y homologous region encodes 'amelogenin'. Genomics 9: 264-269.
27. Nei, M. (1969) Linkage modification and sex difference in recombination. Genetics 63: 681-699.
28. Nei, M. (1987) Molecular Evolutionary Genetics. New York, Columbia University Press.
29. Nei, M., W.-H. Li (1979) Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA 76: 5269-5273.
30. Ohno, S. (1967) Sex Chromosomes and Sex-Linked Genes. Berlin, Springer.
31. Ross, M.T., D.V. Grafham, A.J. Coffey, et al. (2005) The DNA sequence of the human X chromosome. Nature 434: 325-336.
32. Rozas, J., J. C. Sanchez-DelBarrio, X. Messequer, R. Rozas (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19: 2496-2497.
33. Saitou, N., M. Nei (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
34. Sire, J.-Y., S. Delgado, D. Fromentin, M. Girondot (2005) Amelogenin: lessons from evolution. Arch Oral Biol 50: 205-212.
35. Skaletsky, H., T. Kuroda-Kawaguchi, P.J. Minx, H.S. Cordum, L. Hillier, L.G. Brown, S. Repping, T. Pyntikova, J. Ali, T. Bieri, A. Chinwalla, A. Delehaunty, K. Delehaunty, H. Du, G. Fewell, L. Fulton, R. Fulton, T. Graves, S.F. Hou, P. Latrielle, S. Leonard, E. Mardis, R. Maupin, J. McPherson, T. Miner, W. Nash, C. Nguyen, P. Ozersky, K. Pepin, S. Rock, T. Rohlfing, K. Scott, B. Schultz, C. Strong, A. Tin-Wollam, S.P. Yang, R.H. Waterston, R.K. Wilson, S. Rozen, and D.C. Page, 2003, (2003) The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes. Nature 423: 825-837.
36. Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
37. Takahata, N. (1993) Allelic genealogy and human evolution. Mol Biol Evol 10: 2-22.
38. Takahata, N. (2001) Molecular phylogeny and demographic history of humans; in Tobias, P.V., M.A. Raath, J. Moggi-Cecchi, G. A. Doyle (eds): Humanity from African Naissance to Coming Millennia. Johannesburg, Firenze/Witwatersrand University Press, pp 299-305.
39. Thompson, J., T. Gibson, F. Plewniak, F. Jeanmougin, D. Higgins (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
40. Toyosawa, S., C. O'hUigin, F. Figueroa, H. Tichy, J. Klein (1998) Identification and characterization of amelogenin genes in monotremes, reptiles, and amphibians. Proc Natl Acad Sci USA 95: 13056-13061.
41. Watterson, G. A. (1975) On the number of segregating sites in genetical models without recombination. Theor Popul Biol 7: 256-276.
42. Yamamoto, K., T. Tsubota, T. Komatsu, A. Katayama, T. Murase, I. Kita, T. Kudo (2002) Sex identification of Japanese black bear, Ursus thibetanus japonicus, by PCR based on amelogenin gene. J Vet Med Sci 64: 505-508.
43. Yu, N., F.-C. Chen, S. Ota L.B. Jorde, P. Pamilo, L. Patthy, M. Ramsay, T. Jenkins, S.K. Shyue, W.H. Li(2002) Larger genetic differences within Africans than between Africans and Eurasians. Genetics 161: 269-274.
44. Zhang, J., H.F. Rosenberg, M. Nei (1998) Positive Darwinian selection after gene duplication in primate ribonuclease genes. Proc Natl Acad Sci USA 95: 3708-3713.