GeneCite: A stand-alone open source tool for high-throughput literature and pathway mining

OMICS A Journal of Integrative Biology

Volumn 11, Issue 2, 2007, Pages 143-151

  Hammamieh, Rasha ^a   Chakraborty, Nabarun ^a   Wang, Yan ^a   Laing, Mark ^b   Liu, Zaigang ^b   Mulligan, John ^b   Jett, Marti ^a,c  

^a WALTER REED ARMY INSTITUTE OF RESEARCH   (United States)

^b Syntek   (United States)

^c Walter Reed Institute of Research   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOINFORMATICS; COMPUTER PROGRAM; DATA BASE; DATA MINING; GENECITE; GENOME; HIGH THROUGHPUT SCREENING; INFORMATION PROCESSING; INFORMATION RETRIEVAL; MEDICAL LITERATURE; MEDLINE; MOLECULAR BIOLOGY; ONLINE SYSTEM; PRIORITY JOURNAL; SEQUENCE TAGGED SITE;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; INFORMATION STORAGE AND RETRIEVAL; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 34347334548     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2007.4322     Document Type: Article

References (8)

1. AL-SHAHROUR, F., DIAZ-URIARTE, J., and DOPAZO, J. (2004). FatiGO: a web tool for finding significant associations of gene ontology terms with groups of genes. Bioinformatics 20, 578-580.
2. ANDRADE, M.A., and BORK, P. (2000). Automated extraction of information in molecular biology. FEBS Lett 476, 12-17.
3. BECKER, K.G., HOSACK, D.A., DENNIS, G., JR., LEMPICKI, R.A., BRIGHT, T.J., CHEADLE, C., and ENGEL, J. (2003). PubMatrix: a tool for multiplex literature mining. BMC Bioinformatics 4, 61.
4. DUBNICK, M. and MOUNT, D.W. (1990). SPLICE, a computer program for automated extraction of information from GenBank sequence entries. Comput Appl Biosci 6, 343-346.
5. JENSEN, L.J., SARIC, J., and BORK, P. (2006). Literature mining for the biologist: from information retrieval to biological discovery. Nat Rev Genet 7, 119-129.
6. KRALLINGER, M. and VALENCIA, A. (2005).Text-mining and information-retrieval services for molecular biology. Genome Biol 6, 24.
7. ROCCO, D., and CRITCHLOW, T. (2003). Automatic discovery and classification of bioinformatics web sources. Bioinformatics 19, 1927-1933.
8. TANABE, L., SCHERF, U., SMITH, L.H., LEE, J.K., HUNTER, L., and WEINSTEIN, J.N. (1999). MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling. Biotechniques 27, 1210-1217.