-
1
-
-
0033972919
-
Closed loops of nearly standard size: Common basic element of protein structure
-
Berezovsky, I.N., Grosberg, A.Y., and Trifonov, E.N. 2000. Closed loops of nearly standard size: Common basic element of protein structure. FEBS Lett. 466: 283-286.
-
(2000)
FEBS Lett
, vol.466
, pp. 283-286
-
-
Berezovsky, I.N.1
Grosberg, A.Y.2
Trifonov, E.N.3
-
2
-
-
0037459237
-
Thermodynamics of a designed protein catenane
-
Blankenship, J.W. and Dawson, P.E. 2003. Thermodynamics of a designed protein catenane. J. Mol. Biol. 327: 537-548.
-
(2003)
J. Mol. Biol
, vol.327
, pp. 537-548
-
-
Blankenship, J.W.1
Dawson, P.E.2
-
3
-
-
0033575092
-
Biosynthesis of a head to tail cyclized protein with improved biological activity
-
Camarero, J.A. and Muir, T.W. 1999. Biosynthesis of a head to tail cyclized protein with improved biological activity. J. Am. Chem. Soc. 121: 5597-5598.
-
(1999)
J. Am. Chem. Soc
, vol.121
, pp. 5597-5598
-
-
Camarero, J.A.1
Muir, T.W.2
-
4
-
-
0035906728
-
Rescuing a destabilized protein fold through backbone cyclization
-
Camarero, J.A., Fushman, D., Sato, S., Giriat, I., Cowburn, D., Raleigh, D.P., and Muir, T.W. 2001. Rescuing a destabilized protein fold through backbone cyclization. J. Mol. Biol. 308: 1045-1062.
-
(2001)
J. Mol. Biol
, vol.308
, pp. 1045-1062
-
-
Camarero, J.A.1
Fushman, D.2
Sato, S.3
Giriat, I.4
Cowburn, D.5
Raleigh, D.P.6
Muir, T.W.7
-
5
-
-
0034685604
-
Topological and energetic factors: What determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins
-
Clementi, C., Nymeyer, H., and Onuchic, J.N. 2000. Topological and energetic factors: What determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins. J. Mol. Biol. 298: 937-953.
-
(2000)
J. Mol. Biol
, vol.298
, pp. 937-953
-
-
Clementi, C.1
Nymeyer, H.2
Onuchic, J.N.3
-
6
-
-
0034023981
-
Peptide thioester preparation by fmoc solid phase peptide synthesis for use in native chemical ligation
-
Clippingdale, A.B., Barrow, C.J., and Wade, J.D. 2000. Peptide thioester preparation by fmoc solid phase peptide synthesis for use in native chemical ligation. J. Pept. Sci. 6: 225-234.
-
(2000)
J. Pept. Sci
, vol.6
, pp. 225-234
-
-
Clippingdale, A.B.1
Barrow, C.J.2
Wade, J.D.3
-
7
-
-
0019022902
-
Linked and threaded loops in proteins
-
Connolly, M.L., Kuntz, I.D., and Crippen, G.M. 1980. Linked and threaded loops in proteins. Biopolymers 19: 1167-1182.
-
(1980)
Biopolymers
, vol.19
, pp. 1167-1182
-
-
Connolly, M.L.1
Kuntz, I.D.2
Crippen, G.M.3
-
8
-
-
0017815610
-
Experimental studies of protein folding and unfolding
-
Creighton, T.E. 1978. Experimental studies of protein folding and unfolding. Prog. Biophys. Mol. Biol. 33: 231-297.
-
(1978)
Prog. Biophys. Mol. Biol
, vol.33
, pp. 231-297
-
-
Creighton, T.E.1
-
9
-
-
33645238421
-
Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1
-
Das, C., Hoang, Q.Q., Kreinbring, C.A., Luchansky, S.J., and Meray, R.K. 2006. Structural basis for conformational plasticity of the Parkinson's disease-associated ubiquitin hydrolase UCH-L1. Proc. Natl. Acad. Sci. 103: 4675-4680.
-
(2006)
Proc. Natl. Acad. Sci
, vol.103
, pp. 4675-4680
-
-
Das, C.1
Hoang, Q.Q.2
Kreinbring, C.A.3
Luchansky, S.J.4
Meray, R.K.5
-
10
-
-
0035937247
-
Structure and functionality of a designed p53 dimer
-
Davison, T.S., Nie, X., Ma, W., Lin, Y., Kay, C., Benchimol, S., and Arrowsmith, C.H. 2001. Structure and functionality of a designed p53 dimer. J. Mol. Biol. 307: 605-617.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 605-617
-
-
Davison, T.S.1
Nie, X.2
Ma, W.3
Lin, Y.4
Kay, C.5
Benchimol, S.6
Arrowsmith, C.H.7
-
11
-
-
0027944205
-
Synthesis of proteins by native chemical ligation
-
Dawson, P.E., Churchill, M.J., Ghadiri, R.M., and Kent, S.B. 1994. Synthesis of proteins by native chemical ligation. Science 266: 776-779.
-
(1994)
Science
, vol.266
, pp. 776-779
-
-
Dawson, P.E.1
Churchill, M.J.2
Ghadiri, R.M.3
Kent, S.B.4
-
12
-
-
0030037084
-
RhNGF slow unfolding is not due to proline isomerization: Possibility of a cystine knot loop-threading mechanism
-
De Young, L.R., Burton, L.E., Liu, J., Powell, M.F., Schmelzer, C.H., and Skelton, N.J. 1996. RhNGF slow unfolding is not due to proline isomerization: Possibility of a cystine knot loop-threading mechanism. Protein Sci. 5: 1554-1566.
-
(1996)
Protein Sci
, vol.5
, pp. 1554-1566
-
-
De Young, L.R.1
Burton, L.E.2
Liu, J.3
Powell, M.F.4
Schmelzer, C.H.5
Skelton, N.J.6
-
13
-
-
17444404720
-
Foldamer simulations: Novel computational methods and applications to poly-phenylacetylene oligomers
-
Elmer, S.P. and Pande, V.S. 2004. Foldamer simulations: Novel computational methods and applications to poly-phenylacetylene oligomers. J. Chem. Phys. 121: 12760-12771.
-
(2004)
J. Chem. Phys
, vol.121
, pp. 12760-12771
-
-
Elmer, S.P.1
Pande, V.S.2
-
14
-
-
17444383032
-
Length dependent folding kinetics of phenylacetylene oligomers: Structural characterization of a kinetic trap
-
Elmer, S.P. and Pande, V.S. 2005. Length dependent folding kinetics of phenylacetylene oligomers: Structural characterization of a kinetic trap. J. Chem. Phys. 122: 124908.
-
(2005)
J. Chem. Phys
, vol.122
, pp. 124908
-
-
Elmer, S.P.1
Pande, V.S.2
-
15
-
-
25444493142
-
Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water
-
Elmer, S.P., Park, S., and Pande, V.S. 2005a. Foldamer dynamics expressed via Markov state models. I. Explicit solvent molecular-dynamics simulations in acetonitrile, chloroform, methanol, and water. J. Chem. Phys. 123: 114902.
-
(2005)
J. Chem. Phys
, vol.123
, pp. 114902
-
-
Elmer, S.P.1
Park, S.2
Pande, V.S.3
-
16
-
-
25444450005
-
Foldamer dynamics expressed via Markov state models. II. State space decomposition
-
Elmer, S.P., Park, S., and Pande, V.S. 2005b. Foldamer dynamics expressed via Markov state models. II. State space decomposition. J. Chem. Phys. 123: 114903.
-
(2005)
J. Chem. Phys
, vol.123
, pp. 114903
-
-
Elmer, S.P.1
Park, S.2
Pande, V.S.3
-
17
-
-
0021095334
-
Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor
-
Goldenberg, D.P. and Creighton, T.E. 1983. Circular and circularly permuted forms of bovine pancreatic trypsin inhibitor. J. Mol. Biol. 165: 407-413.
-
(1983)
J. Mol. Biol
, vol.165
, pp. 407-413
-
-
Goldenberg, D.P.1
Creighton, T.E.2
-
18
-
-
0033621158
-
Protein synthesis by native chemical ligation: Expanded scope by using straightforward methodology
-
Hackeng, T.M., Griffin, J.H., and Dawson, P.E. 1999. Protein synthesis by native chemical ligation: Expanded scope by using straightforward methodology. Proc. Natl. Acad. Sci. 96: 10068-10073.
-
(1999)
Proc. Natl. Acad. Sci
, vol.96
, pp. 10068-10073
-
-
Hackeng, T.M.1
Griffin, J.H.2
Dawson, P.E.3
-
19
-
-
0014093994
-
Studies on the specificity of pepsin
-
Inouye, K. and Fruton, J.S. 1967. Studies on the specificity of pepsin. Biochemistry 6: 1765-1777.
-
(1967)
Biochemistry
, vol.6
, pp. 1765-1777
-
-
Inouye, K.1
Fruton, J.S.2
-
20
-
-
0029902679
-
Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase
-
Kuzmic, P. 1996. Program DYNAFIT for the analysis of enzyme kinetic data: Application to HIV proteinase. Anal. Biochem. 237: 260-273.
-
(1996)
Anal. Biochem
, vol.237
, pp. 260-273
-
-
Kuzmic, P.1
-
21
-
-
33646904782
-
Statistics of knots, geometry of conformations, and evolution of proteins
-
Lua, R.C. and Grosberg, A.Y. 2006. Statistics of knots, geometry of conformations, and evolution of proteins. PLoS Comp. Biol. 2: e45.
-
(2006)
PLoS Comp. Biol
, vol.2
-
-
Lua, R.C.1
Grosberg, A.Y.2
-
22
-
-
13844255609
-
Folding studies on a knotted protein
-
Mallam, A.L. and Jackson, S.E. 2005. Folding studies on a knotted protein. J. Mol. Biol. 346: 1409-1421.
-
(2005)
J. Mol. Biol
, vol.346
, pp. 1409-1421
-
-
Mallam, A.L.1
Jackson, S.E.2
-
23
-
-
33745163582
-
Probing nature's knots: The folding pathway of a knotted homodimeric protein
-
Mallam, A.L. and Jackson, S. 2006. Probing nature's knots: The folding pathway of a knotted homodimeric protein. J. Mol. Biol. 359: 1420-1436.
-
(2006)
J. Mol. Biol
, vol.359
, pp. 1420-1436
-
-
Mallam, A.L.1
Jackson, S.2
-
24
-
-
33846362515
-
A comparison of the folding of two knotted proteins: YbeA and YibK
-
Mallam, A.L. and Jackson, S.E. 2007. A comparison of the folding of two knotted proteins: YbeA and YibK. J. Mol. Biol. 366: 650-665.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 650-665
-
-
Mallam, A.L.1
Jackson, S.E.2
-
25
-
-
0028421135
-
Are there knots in proteins?
-
Mansfield, M.L. 1994. Are there knots in proteins? Nat. Struct. Biol. 1: 213-214.
-
(1994)
Nat. Struct. Biol
, vol.1
, pp. 213-214
-
-
Mansfield, M.L.1
-
27
-
-
0032525133
-
Nine hydrophobic side chains are key determinants of the thermodynamic stability and oligomerization status of tumour suppressor p53 tetramerization domain
-
Mateu, M.G. and Fersht, A.R. 1998. Nine hydrophobic side chains are key determinants of the thermodynamic stability and oligomerization status of tumour suppressor p53 tetramerization domain. EMBO J. 17: 2748-2758.
-
(1998)
EMBO J
, vol.17
, pp. 2748-2758
-
-
Mateu, M.G.1
Fersht, A.R.2
-
28
-
-
0032906377
-
Mechanism of folding and assembly of a small tetrameric protein domain from tumor suppressor p53
-
Mateu, M.G., Del Pino, M.M., and Fersht, A.R. 1999. Mechanism of folding and assembly of a small tetrameric protein domain from tumor suppressor p53. Nat. Struct. Biol. 6: 191-198.
-
(1999)
Nat. Struct. Biol
, vol.6
, pp. 191-198
-
-
Mateu, M.G.1
Del Pino, M.M.2
Fersht, A.R.3
-
29
-
-
0024722420
-
Stabilization of phage T4 lysozyme by engineered disulfide bonds
-
Matsumura, M., Becktel, W.J., Levitt, M., and Matthews, B.W. 1989. Stabilization of phage T4 lysozyme by engineered disulfide bonds. Proc. Natl. Acad. Sci. 86: 6562-6566.
-
(1989)
Proc. Natl. Acad. Sci
, vol.86
, pp. 6562-6566
-
-
Matsumura, M.1
Becktel, W.J.2
Levitt, M.3
Matthews, B.W.4
-
30
-
-
12544253837
-
Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate
-
Misaghi, S., Galardy, P.J., Meester, W.J.N., Ovaa, H., Ploegh, H.L., and Gaudet, R. 2005. Structure of the ubiquitin hydrolase UCH-L3 complexed with a suicide substrate. J. Biol. Chem. 280: 1512-1520.
-
(2005)
J. Biol. Chem
, vol.280
, pp. 1512-1520
-
-
Misaghi, S.1
Galardy, P.J.2
Meester, W.J.N.3
Ovaa, H.4
Ploegh, H.L.5
Gaudet, R.6
-
31
-
-
0035997122
-
An enzyme with a deep trefoil knot for the active-site architecture
-
Nureki, O., Shirouzu, M., Hashimoto, K., Ishitani, R., Terada, T., Tamakoshi, M., Oshima, T., Chijimatsu, M., Takio, K., Vassylyev, D.G., et al. 2002. An enzyme with a deep trefoil knot for the active-site architecture. Acta Crystallogr. D Biol. Crystallogr. D58: 1129-1137.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr
, vol.D58
, pp. 1129-1137
-
-
Nureki, O.1
Shirouzu, M.2
Hashimoto, K.3
Ishitani, R.4
Terada, T.5
Tamakoshi, M.6
Oshima, T.7
Chijimatsu, M.8
Takio, K.9
Vassylyev, D.G.10
-
32
-
-
0026486811
-
In situ neutralization in Boc-chemistry solid phase peptide synthesis
-
Schnolzer, M., Alewood, P., Jones, A., Alewood, D., and Kent, S.B.H. 1992. In situ neutralization in Boc-chemistry solid phase peptide synthesis. Int. J. Pept. Protein Res. 40: 180-193.
-
(1992)
Int. J. Pept. Protein Res
, vol.40
, pp. 180-193
-
-
Schnolzer, M.1
Alewood, P.2
Jones, A.3
Alewood, D.4
Kent, S.B.H.5
-
33
-
-
0034710671
-
A deeply knotted protein structure and how it might fold
-
Taylor, W.R. 2000. A deeply knotted protein structure and how it might fold. Nature 406: 916-919.
-
(2000)
Nature
, vol.406
, pp. 916-919
-
-
Taylor, W.R.1
-
34
-
-
0003098393
-
Kinetic partitioning mechanism as unifying theme in the folding of biomolecules
-
Thirumalai, D., Klimov, D.K., and Woodson, S.A. 1997. Kinetic partitioning mechanism as unifying theme in the folding of biomolecules. Theor. Chem. Acc. 1: 23-30.
-
(1997)
Theor. Chem. Acc
, vol.1
, pp. 23-30
-
-
Thirumalai, D.1
Klimov, D.K.2
Woodson, S.A.3
-
35
-
-
0024804338
-
A novel concatenated dimer of recombinant bovine somatotropin
-
Violand, B.N., Takano, M., Curran, D.F., and Bentle, L.A. 1989. A novel concatenated dimer of recombinant bovine somatotropin. J. Protein Chem. 8: 619-628.
-
(1989)
J. Protein Chem
, vol.8
, pp. 619-628
-
-
Violand, B.N.1
Takano, M.2
Curran, D.F.3
Bentle, L.A.4
-
36
-
-
33749347406
-
Intricate knots in proteins: Function and evolution
-
Virnau, P., Mirny, L.A., and Kardar, M. 2006. Intricate knots in proteins: Function and evolution. PLoS Comp. Biol. 2: e122.
-
(2006)
PLoS Comp. Biol
, vol.2
-
-
Virnau, P.1
Mirny, L.A.2
Kardar, M.3
-
37
-
-
0034703226
-
Topologically linked protein rings in the bacteriophage HK97 capsid
-
Wikoff, W.R., Liljas, L., Duda, R.L., Tsuruta, H., Hendrix, R.W., and Johnson, J.E. 2000. Topologically linked protein rings in the bacteriophage HK97 capsid. Science 289: 2129-2133.
-
(2000)
Science
, vol.289
, pp. 2129-2133
-
-
Wikoff, W.R.1
Liljas, L.2
Duda, R.L.3
Tsuruta, H.4
Hendrix, R.W.5
Johnson, J.E.6
-
38
-
-
0035477587
-
Design and synthesis of a protein catenane
-
Yan, L.Z. and Dawson, P.E. 2001. Design and synthesis of a protein catenane. Angew. Chem. Int. Ed. Engl. 40: 3625-3627.
-
(2001)
Angew. Chem. Int. Ed. Engl
, vol.40
, pp. 3625-3627
-
-
Yan, L.Z.1
Dawson, P.E.2
|