Differential binding of proteins to the IL1B -31 T/C polymorphism in lung epithelial cells

Cytokine

Volumn 38, Issue 1, 2007, Pages 43-48

  Lind, Helge ^a   Haugen, Aage ^a   Zienolddiny, Shanbeh ^a  

^a NATIONAL INSTITUTE OF OCCUPATIONAL HEALTH   (Norway)

Author keywords

Genetic susceptibility; Inflammation; Lung cancer

Indexed keywords

CCAAT ENHANCER BINDING PROTEIN BETA; INTERLEUKIN 1BETA; TATA BINDING PROTEIN;

ARTICLE; CANCER RISK; CONTROLLED STUDY; HUMAN; HUMAN CELL; LUNG ALVEOLUS EPITHELIUM; LUNG NON SMALL CELL CANCER; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN EXPRESSION; SINGLE NUCLEOTIDE POLYMORPHISM;

BASE SEQUENCE; CCAAT-ENHANCER-BINDING PROTEIN-BETA; CELL LINE, TUMOR; ELECTROPHORETIC MOBILITY SHIFT ASSAY; EPITHELIAL CELLS; GENE EXPRESSION REGULATION; GENETIC VECTORS; HUMANS; INTERLEUKIN-1BETA; LUNG; POLYMORPHISM, SINGLE NUCLEOTIDE; PROMOTER REGIONS (GENETICS); TATA-BOX BINDING PROTEIN;

EID: 34250882936     PISSN: 10434666     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cyto.2007.05.001     Document Type: Article

References (36)

1. Coussens L.M., and Werb Z. Inflammation and cancer. Nature 420 (2002) 860-867
2. Aggarwal B.B., Shishodia S., Sandur S.K., Pandey M.K., and Sethi G. Inflammation and cancer: How hot is the link?. Biochem Pharmacol 72 (2006) 1605-1621
3. Bartsch H., and Nair J. Chronic inflammation and oxidative stress in the genesis and perpetuation of cancer: role of lipid peroxidation, DNA damage, and repair. Langenbecks Arch Surg 391 (2006) 499-510
4. Emmendoerffer A., Hecht M., Boeker T., Mueller M., and Heinrich U. Role of inflammation in chemical-induced lung cancer. Toxicol Lett 112-113 (2000) 185-191
5. Smith C.J., Perfetti T.A., and King J.A. Perspectives on pulmonary inflammation and lung cancer risk in cigarette smokers. Inhal Toxicol 18 (2006) 667-677
6. Dinarello C.A. The IL-1 family and inflammatory diseases. Clin Exp Rheumatol 20 (2002) S1-S13
7. Dinarello C.A. Biologic basis for interleukin-1 in disease. Blood 87 (1996) 2095-2147
8. Bensi G., Raugei G., Palla E., Carinci V., Tornese B.D., and Melli M. Human interleukin-1 beta gene. Gene 52 (1987) 95-101
9. Clark B.D., Collins K.L., Gandy M.S., Webb A.C., and Auron P.E. Genomic sequence for human prointerleukin 1 beta: possible evolution from a reverse transcribed prointerleukin 1 alpha gene. Nucleic Acids Res 14 (1986) 7897-7914
10. Shirakawa F., Saito K., Bonagura C.A., Galson D.L., Fenton M.J., Webb A.C., and Auron P.E. The human prointerleukin 1 beta gene requires DNA sequences both proximal and distal to the transcription start site for tissue-specific induction. Mol Cell Biol 13 (1993) 1332-1344
11. Fenton M.J. Review: transcriptional and post-transcriptional regulation of interleukin 1 gene expression. Int J Immunopharmacol 14 (1992) 401-411
12. Monks B.G., Martell B.A., Buras J.A., and Fenton M.J. An upstream protein interacts with a distinct protein that binds to the cap site of the human interleukin 1 beta gene. Mol Immunol 31 (1994) 139-151
13. di Giovine F.S., Takhsh E., Blakemore A.I., and Duff G.W. Single base polymorphism at -511 in the human interleukin-1 beta gene (IL1 beta). Hum Mol Genet 1 (1992) 450
14. Pociot F., Molvig J., Wogensen L., Worsaae H., and Nerup J. A TaqI polymorphism in the human interleukin-1 beta (IL-1 beta) gene correlates with IL-1 beta secretion in vitro. Eur J Clin Invest 22 (1992) 396-402
15. Guasch J.F., Bertina R.M., and Reitsma P.H. Five novel intragenic dimorphisms in the human interleukin-1 genes combine to high informativity. Cytokine 8 (1996) 598-602
16. Bidwell J., Keen L., Gallagher G., Kimberly R., Huizinga T., McDermott M.F., Oksenberg J., McNicholl J., Pociot F., Hardt C., and D'Alfonso S. Cytokine gene polymorphism in human disease: on-line databases. Genes Immun 1 (1999) 3-19
17. Haukim N., Bidwell J.L., Smith A.J., Keen L.J., Gallagher G., Kimberly R., Huizinga T., McDermott M.F., Oksenberg J., McNicholl J., Pociot F., Hardt C., and D'Alfonso S. Cytokine gene polymorphism in human disease: on-line databases. Genes Immun 3 Suppl. 2 (2002) 313-330
18. Zienolddiny S., Ryberg D., Maggini V., Skaug V., Canzian F., and Haugen A. Polymorphisms of the interleukin-1 beta gene are associated with increased risk of non-small cell lung cancer. Int J Cancer 109 (2004) 353-356
19. Chen H., Wilkins L.M., Aziz N., Cannings C., Wyllie D.H., Bingle C., Rogus J., Beck J.D., Offenbacher S., Cork M.J., Rafie-Kolpin M., Hsieh C.M., Kornman K.S., and Duff G.W. Single nucleotide polymorphisms in the human interleukin-1B gene affect transcription according to haplotype context. Hum Mol Genet 15 (2006) 519-529
20. El Omar E.M., Carrington M., Chow W.H., McColl K.E., Bream J.H., Young H.A., Herrera J., Lissowska J., Yuan C.C., Rothman N., Lanyon G., Martin M., Fraumeni Jr. J.F., and Rabkin C.S. Interleukin-1 polymorphisms associated with increased risk of gastric cancer. Nature 404 (2000) 398-402
21. Wobbe C.R., and Struhl K. Yeast and human TATA-binding proteins have nearly identical DNA sequence requirements for transcription in vitro. Mol Cell Biol 10 (1990) 3859-3867
22. Toda Y., Tsukada J., Misago M., Kominato Y., Auron P.E., and Tanaka Y. Autocrine induction of the human pro-IL-1beta gene promoter by IL-1beta in monocytes. J Immunol 168 (2002) 1984-1991
23. Hunninghake G.W., Monks B.G., Geist L.J., Monick M.M., Monroy M.A., Stinski M.F., Webb A.C., Dayer J.M., Auron P.E., and Fenton M.J. The functional importance of a cap site-proximal region of the human prointerleukin 1 beta gene is defined by viral protein trans-activation. Mol Cell Biol 12 (1992) 3439-3448
24. Buras J.A., Monks B.G., and Fenton M.J. The NF-beta A-binding element, not an overlapping NF-IL-6-binding element, is required for maximal IL-1 beta gene expression. J Immunol 152 (1994) 4444-4454
25. Zhang Y., and Rom W.N. Regulation of the interleukin-1 beta (IL-1 beta) gene by mycobacterial components and lipopolysaccharide is mediated by two nuclear factor-IL6 motifs. Mol Cell Biol 13 (1993) 3831-3837
26. Kominato Y., Galson D., Waterman W.R., Webb A.C., and Auron P.E. Monocyte expression of the human prointerleukin 1 beta gene (IL1B) is dependent on promoter sequences which bind the hematopoietic transcription factor Spi-1/PU.1. Mol Cell Biol 15 (1995) 58-68
27. Cartharius K., Frech K., Grote K., Klocke B., Haltmeier M., Klingenhoff A., Frisch M., Bayerlein M., and Werner T. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21 (2005) 2933-2942
28. Sambrook J., and Russel D.W. Molecular Cloning A Laboratory Manual (2001), Cold Spring Harbor Laboratory Press, Cold Spring Harbor (NY)
29. Chakravorty M., Ghosh A., Choudhury A., Santra A., Hembrum J., and Roychoudhury S. Interaction between IL1B gene promoter polymorphisms in determining susceptibility to Helicobacter pylori associated duodenal ulcer. Hum Mutat 27 (2006) 411-419
30. Hiscott J., Marois J., Garoufalis J., D'Addario M., Roulston A., Kwan I., Pepin N., Lacoste J., Nguyen H., and Bensi G. Characterization of a functional NF-kappa B site in the human interleukin 1 beta promoter: evidence for a positive autoregulatory loop. Mol Cell Biol 13 (1993) 6231-6240
31. Bird S., Zou J., Wang T., Munday B., Cunningham C., and Secombes C.J. Evolution of interleukin-1beta. Cytokine Growth Factor Rev 13 (2002) 483-502
32. Cahill C.M., Waterman W.R., Xie Y., Auron P.E., and Calderwood S.K. Transcriptional repression of the prointerleukin 1beta gene by heat shock factor 1. J Biol Chem 271 (1996) 24874-24879
33. Xie Y., Chen C., Stevenson M.A., Auron P.E., and Calderwood S.K. Heat shock factor 1 represses transcription of the IL-1beta gene through physical interaction with the nuclear factor of interleukin 6. J Biol Chem 277 (2002) 11802-11810
34. Stewart J.J., Fischbeck J.A., Chen X., and Stargell L.A. Non-optimal TATA elements exhibit diverse mechanistic consequences. J Biol Chem 281 (2006) 22665-22673
35. Stewart J.J., and Stargell L.A. The stability of the TFIIA-TBP-DNA complex is dependent on the sequence of the TATAAA element. J Biol Chem 276 (2001) 30078-30084
36. Yang Z., Wara-Aswapati N., Chen C., Tsukada J., and Auron P.E. NF-IL6 (C/EBPbeta) vigorously activates il1b gene expression via a Spi-1 (PU.1) protein-protein tether. J Biol Chem 275 (2000) 21272-21277