Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins

International Journal of Biological Macromolecules

Volumn 41, Issue 3, 2007, Pages 295-300

  Hamodrakas, Stavros J ^a   Liappa, Christina ^a   Iconomidou, Vassiliki A ^a  

^a UNIVERSITY OF ATHENS   (Greece)

Author keywords

Amyloid forming proteins; Amyloidogenic determinants; Conformational switches; Consensus prediction; Prediction algorithms

Indexed keywords

AMYLOID PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; CONSENSUS; CRYSTAL STRUCTURE; PREDICTION; PROTEIN ANALYSIS; PROTEIN STRUCTURE;

EID: 34250793865     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2007.03.008     Document Type: Article

References (25)

1. Uversky V.N., and Fink A.L. Biochim. Biophys. Acta 1698 (2004) 131
2. Chiti F., and Dobson C.M. Annu. Rev. Biochem. 75 (2006) 333
3. Kelly J.W., and Balch W.E. J. Cell Biol. 161 3 (2002) 461
4. Stevens F.J. J. Protein Folding Disord. 11 (2004) 233
5. Iconomidou V.A., Vriend G., and Hamodrakas S.J. FEBS Lett. 479 (2000) 141
6. Dobson C.M. Trends Biochem. Sci. 24 (1999) 329
7. Esteras-Chopo A., Serrano L., and Lopez de la Paz M. Proc. Natl. Acad. Sci. U.S.A. 102 46 (2005) 16672
8. Lopez de la Paz M., and Serrano L. Proc. Natl. Acad. Sci. U.S.A. 101 (2004) 87
9. Iconomidou V.A., Chryssikos G.D., Gionis V., Galanis A.S., Cordopatis P., Hoenger A., and Hamodrakas S.J. J. Struct. Biol. 156 (2006) 480
10. Galzitskaya O.V., Garbuzynskiy S.G., and Lobanov M.V. PloS Comput. Biol. 2 12 (2006) 1639
11. Thompson M.J., Sievers S.A., Karanicolas J., Ivanova M.I., Baker D., and Eisenberg D. Proc. Natl. Acad. Sci. U.S.A. 103 11 (2006) 4074
12. Zhong L., and Johnson Jr. W.C. Proc. Natl. Acad. Sci. U.S.A. 89 10 (1992) 4462
13. Waterhous D.V., and Johnson Jr. W.C. Biochemistry 33 8 (1994) 2121
14. Hamodrakas S.J. CABIOS 4 4 (1988) 473
15. Kelly J.W. Curr. Opin. Struct. Biol. 6 (1996) 11
16. Groß M. Curr. Protein Pept. Sci. 1 (2000) 339
17. Kallberg Y., Gustafsson M., Persson B., and Thyberg J. J. Johansson 276 16 (2001) 12945
18. Pagel K., Vagt T., and Koksch B. Org. Biomol. Chem. 3 (2005) 3843
19. Young M., Kirshenbaum K., Dill K.A., and Highsmith S. Protein Sci. 8 (1999) 1752
20. Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Natale D.A., O'Donovan C., Redaschi N., and Yeh L.S. Nucleic Acids Res. 33 (2005) D154
21. Kouranov A., Xie L., de la Cruz J., Chen L., Westbrook J., Bourne P.E., and Berman H.M. Nucleic Acids Res. 34 (2006) D302
22. Combet C., Blanchet C., Geourjon C., and Deleage G. Trends Biochem. Sci. 25 3 (2000) 147
23. Polymeropoulos M.H., Lavedan C., Leroy E., Ide S.E., Dehejia A., Dutra A., Pike B., Root H., Rubenstein J., Boyer R., Stenroos E.S., Chandrasekharappa S., Athanassiadou A., Papapetropoulos T., Johnson W.G., Lazzarini A.M., Duvoisin R.C., Di Iorio G., Golbe L.I., and Nussbaum R.L. Science 276 (1997) 2045
24. Fernandez-Escamilla A.M., Rousseaux F., Schymkowitz J., and Serrano L. Nat. Biotechnol. 22 10 (2004) 1302
25. Pawar A.P., DuBay K.F., Zurdo J., Chiti F., Vendruscolo M., and Dobson C.M. J. Mol. Biol. 350 (2005) 379