Identification and quantification of Polymyxa graminis f. sp. temperata and P. graminis f. sp. tepida on barley and wheat

Plant Disease

Volumn 91, Issue 7, 2007, Pages 857-864

  Vaianopoulos C ^a   Bragard, C ^a   Moreau, V ^a   Maraite, H ^a   Legreve A ^a  

^a UNIVERSITÉ CATHOLIQUE DE LOUVAIN   (Belgium)

Author keywords

Plasmodiophorid

Indexed keywords

CROPS; DNA; GENETIC ENGINEERING; SOILS;

PLASMODIOPHORID; POLYMYXA GRAMINIS; RIBOTYPES;

MICROORGANISMS;

BARLEY; NUCLEIC ACIDS; PARASITES; SOIL; WHEAT;

HORDEUM; PLASMODIOPHORIDA; POLYMYXA GRAMINIS; TRITICUM AESTIVUM;

EID: 34250792673     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS-91-7-0857     Document Type: Article

References (30)

1. Adams, M. J. 2002. The mosaic viruses of barley: Problems and prospects. Pages 105-112 in: Proceedings of the BCPC Conference, Vol. 1, Pests and Diseases 2002. The British Crop Protection Council, Farnham, UK.
2. Adams, M. J., and Jacquier, C. 1994. Infection of cereals and grasses by isolates of Polymyxa graminis (Plasmodiophorales). Ann. Appl. Biol. 125:53-60.
3. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
4. Archibald, J. A., and Keeling, P. J. 2004. Actin and ubiquitin protein sequences support a Cercozoan/Foraminiferan ancestry for the plasmodiophorid plant pathogens. J. Eukaryot. Microbiol. 51:113-118.
5. Bastin, V., Boute, C., and Maraite, H. 1989. Inoculum potential and host range of Polymyxa graminis. Bull. OEPP/EPPO Bull. 19:541-546.
6. Bulman, S. R., Kuhn, S. F., Marshall, J. W., and Schnepf, E. 2001. A phylogenetic analysis of the SSU rRNA from members of the Plasmodiophorida and Phagomyxida. Protist 152:43-51.
7. Delfosse, P., Reddy, A. S., Legrève, A., Thirumala Devi, K., Abdurahman, M. D., Maraite, H., and Reddy, D. V. R. 2000. Serological methods for detection of Polymyxa graminis, an obligate root parasite and vector of plant viruses. Phytopathology 90:537-545.
8. Devereux, J., Haeberli, P., and Smithies, O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
9. Dieryck, B., Delfosse, P., Otto, G., Sauvenier, X., Bragard, C., and Legrève, A. 2005. Peanut clump virus and Polymyxa graminis interactions with pearl millet and sorghum. Parasitica 61:25-34.
10. Kanyuka, K., Ward, E., and Adams, M. J. 2003. Polymyxa graminis and the cereal viruses it transmits: A research challenge. Mol. Plant Pathol. 4:393-406.
11. Legrève, A., Delfosse, P., and Maraite, H. 2002. Phylogenetic analysis of Polymyxa species based on nuclear 5.8S and internal transcribed spacers ribosomal DNA sequences. Mycol. Res. 106:138-147.
12. Legrève, A., Delfosse, P., Ribonnet, L., Paridaens, A. M., Lurkin, R., and Maraite, H. 2005. Diversity of Polymyxa graminis associated with cereals in West Africa. Parasitica 61:5-10.
13. Legrève, A., Delfosse, P., Van Hese, V., Bragard, C., and Maraite, H. 2003. Broad-spectrum detection of Polymyxa species and form species by polymerase chain reaction. Pages 40-43 in: Proc. Sympos. Int. Working Group Plant Viruses Fungal Vectors, 5th. IPS, Zurich, Switzerland. C. M. Rush, and U. Merz, eds. American Society of Sugar Beet Technologists, Denver, CO.
14. Legrève, A., Delfosse, P., Vanpee, B., Goffin, A., and Maraite, H. 1998. Differences in temperature requirements between Polymyxa sp. of Indian origin and Polymyxa graminis and Polymyxa betae from temperate areas. Eur. J. Plant Pathol. 104:195-205.
15. Legrève, A., Vanpee, B., Delfosse, P., and Maraite, H. 2000. Host range of tropical and subtropical isolates of Polymyxa graminis. Eur. J. Plant Pathol. 106:379-389.
16. Legrève, A., Vanpee, B., Risopoulos, J., Ward, E., and Maraite, H. 1996. Characterization of Polymyxa sp. associated with the transmission of Indian peanut clump virus. Pages 157-160 in: Proc. Sympos. Int. Working Group Plant Viruses Fungal Vectors, 3rd. J. L. Sherwood and C. M. Rush, eds. American Society of Sugar Beet Technologists, Denver, CO.
17. Maraite, H. 1991. Transmission of viruses by soil fungi. Pages 67-82 in: Developments in Agricultural and Managed-Forest Ecology 23: Biotic Interactions and Soil-borne Diseases. Proc. Conf. Eur. Foundation Plant Pathol., 1st. A. B. R. Beemster, G. J. Bollen, M. Gerlagh, M. A. Ruissen, B. Schippers, and A. Tempel, eds. Elsevier Science Publishers, Amsterdam.
18. Maraite, H., Goffart, J. P., and Bastin, V. 1988. Development of a quantitative method for asssessment of Polymyxa graminis Led. inoculum potential in soils. Pages 259-266 in: Integrated Crop Protection in Cereals. Proc. Meeting EC Experts' Group. R. Cavalloro and K. D. Sunderland, eds. Balkema, Rotterdam, Netherlands.
19. Maraite, H., and Legrève, A. 1994. Polymyxa graminis: Vecteur des mosaïques. Pages 15-18 in: Recueil des Communications, Journée Mosaïques des céréales transmises par Polymyxa graminis Led., 07-08.04.94, Blois, France.
20. Morales, F. J., Ward, E., Castano, M., Arroyave, J. A., Lozano, I., and Adams, M. J. 1999. Emergence and partial characterization of rice stripe necrosis virus and its fungus vector in South America. Eur. J. Plant Pathol. 105:643-650.
21. Ratti, C., Budge, G., Ward, L., Clover, G., Rubies-Autonell, C., and Henry, C. 2004. Detection and relative quantification of Soilborne cereal mosaic virus (SBCMV) and Polymyxa graminis in winter wheat using real-time PCR (TaqMan®). J. Virol. Methods 122:95-103.
22. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual, Vol. 3. 2nd ed., Appendix E.5. Cold Spring Harbor Laboratory, Plainview, NY.
23. Subr, Z. W., Kastirr, U., and Kuhne, T. 2002. Subtractive cloning of DNA from Polymyxa graminis - An obligate parasitic plasmodiophorid. J. Phytopathol. 150:564-568.
24. Vaïanopoulos, C., Legrève, A., Barbier, A., Steyer, S., Maraite, H., and Bragard, C. 2003. Detection of Barley yellow mosaic virus and Barley mild mosaic virus by RT-PCR on resistant barley cultivars. Parasitica 59:67-74.
25. Vaïanopoulos, C., Legrève, A., Lorca, C., Moreau, V., Steyer, S., Maraite, H., and Bragard, C. 2005. Occurrence of bymo- and furoviruses on wheat in Belgium. Parasitica 61:45-52.
26. Vaïanopoulos, C., Legrève, A., Lorca, C., Moreau, V., Steyer, S., Maraite, H., and Bragard, C. 2006. Widespread occurrence of Wheat spindle streak mosaic virus in Belgium. Plant Dis. 90:723-728.
27. Ward, E., and Adams, M. J. 1998. Analysis of ribosomal DNA sequences of Polymyxa species and related fungi and the development of genus- and species-specific PCR primers. Mycol. Res. 102:965-974.
28. Ward, E., Adams, M. J., Mutasa, E. S., Collier, C. R., and Asher, M. J. C. 1994. Characterization of Polymyxa species by restriction analysis of PCR-amplified ribosomal DNA. Plant Pathol. 43:872-877.
29. Ward, E., Kanyuka, K., Motteram, J., Kornyukhin, D., and Adams, M. J. 2005. The use of conventional and quantitative real-time PCR assays for Polymyxa graminis to examine host plant resistance, inoculum levels and intraspecific variation. New Phytol. 165:875-885.
30. White, T. J., Bruns, T., Lee, S., and Taylor, J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pages 315-322 in: PCR Protocols: A Guide to Methods and Application. M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White, eds. Academic Press, San Diego, CA.