Subtractive cloning of DNA from Polymyxa graminis - An obligate parasitic plasmodiophorid

Journal of Phytopathology

Volumn 150, Issue 10, 2002, Pages 564-568

  Subr Z W ^a   Kastirr, U ^b   Kuhne T ^b  

^a INSTITUTE OF VIROLOGY   (Slovakia)

^b Fed Ctr Bread Res Cult Plants   (Germany)

Author keywords

DNA cloning; Polymerase chain reaction; Polymyxa graminis; Subtractive hybridization

Indexed keywords

HYBRIDIZATION;

BACTERIA (MICROORGANISMS); FUNGI; HORDEUM VULGARE SUBSP. VULGARE; MYXOGASTRIA; PLASMODIOPHORIDA; POLYMYXA; POLYMYXA BETAE; POLYMYXA GRAMINIS;

EID: 0036818717     PISSN: 09311785     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1439-0434.2002.00795.x     Document Type: Article

References (18)

1. Adams, M. J., A. G. Swaby, I. Macfarlane (1986): The susceptibility of barley cultivars to barley yellow mosaic virus (BaYMV) and its fungal vector, Polymyxa graminis. Ann. Appl. Biol. 109, 561-572.
2. Birnboim, H. C., J. Doly (1979): A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 1513-1523.
3. Dagert, M., S. D. Ehrlich (1974): Prolonged incubation in calcium chloride improves competence of Escherichia coli cells. Gene 6, 23-28.
4. Delfosse, P., A. S. Reddy, A. Legréve, K. Thirumala Devi, M. D. Abdurahman, H. Maraite, D. V. R. Reddy (2000): Serological methods for detection of Polymyxa graminis, an obligate root parasite and vector of plant viruses. Phytopathology 90, 537-545.
5. Devereux, J., P. Haeberli, O. Smithies (1984): A comprehensive set of sequence analysis program for the VAX. Nucleic Acids Res. 12, 387-395.
6. Gray, J. W., C. Collins (2000): Genome changes and gene expression in human solid tumors. Carcinogenesis 21, 443-452.
7. Hemberger, M., J. C. Cross, H. H. Ropers, H. Lehrach, R. Fundele, H. Himmelbauer (2001): UniGene cDNA array-based monitoring of transcriptome changes during mouse placental development. Proc. Natl. Acad. Sci. USA 98, 13126-13131.
8. Klickstein, L. B. (1999): Production of a subtracted cDNA library. In: Chanda, V. B. (ed.), Current Protocols in Molecular Biology, CD Version, John Wiley & Sons, Inc., USA.
9. Lee, S. B., J. W. Taylor (1990): Isolation of DNA from fungal mycelia and single spores. In: Innis, N. A., D.H., Gelfand, J.J., Sninsky, T. J. White, (eds), PCR Protocols. A Guide to Methods and Applications, pp. 282-287. Academic Press, San Diego, USA.
10. Mutasa-Gottgens, E. S., D. M. Chwarszczynska, K. Halsey, M. J. C. Asher (2000): Specific polyclonal antibodies for the obligate plant parasite Polymyxa - A targeted recombinant DNA approach. Plant Pathol. 49, 276-287.
11. Mutasa, E. S., D. M. Chwarszczynska, M. J. Adams, E. Ward, M. J. C. Asher (1995): Development of PCR for the detection of Polymyxa betae in sugar beet roots and its application in field studies. Physiol. Mol. Plant Pathol. 47, 303-313.
12. Mutasa, E. S., E. Ward, M. J. Adams, C. R. Collier, D. M. Chwarszczynska, M. J. C. Asher (1993): A sensitive DNA probe for the detection of Polymyxa betae in sugar beet roots. Physiol. Mol. Plant Pathol. 43, 379-390.
13. Patel, M., H. Sive (1999): PCR-based subtractive cDNA cloning. In: Chanda, V. B. (ed.), Current Protocols in Molecular Biology, CD Version, John Wiley & Sons, Inc., USA.
14. Rosenberg, M., M. Przylbylska, D. Straus (1994): RFLP subtraction: A method for making libraries of polymorphic markers. Proc. Natl. Acad. Sci. USA 91, 6113-6117.
15. Wang, Z., D. D. Brown (1991): A gene expression screen. Proc. Natl. Acad. Sci. USA 88, 11505-11509.
16. Wang, X., G. Z. Feuerstein (2000): Suppression subtractive hybridisation: Application in the discovery of novel pharmacological targets. Pharmacogenomics 1, 101-108.
17. Ward, E., M. J. Adams (1998): Analysis of ribosomal DNA sequences of Polymyxa species and related fungi and the development of genus- and species-specific PCR primers. Mycol. Res. 102, 965-974.
18. Ward, E., M. J. Adams, E. S. Mutasa, C. R. Collier, M. J. C. Asher (1994): Characterization of Polymyxa species by restriction analysis of PCR-amplified ribosomal DNA. Plant Pathology 43, 872-877.