Mass spectrometry and integrated virus detection system characterization of MS2 bacteriophage

Toxicology Mechanisms and Methods

Volumn 17, Issue 5, 2007, Pages 241-254

  Wick, Charles H ^a   Elashvili, Ilya ^a   Stanford, Michael F ^a   McCubbin, Patrick E ^b   Deshpande, Samir V ^c   Kuzmanovic, Deborah ^d   Jabbour, Rabih E ^d  

^a EDGEWOOD CHEMICAL BIOLOGICAL CENTER   (United States)

^b OptiMetrics Inc   (United States)

^c SCIENCE AND TECHNOLOGY CORPORATION   (United States)

^d SCIENCE APPLICATIONS INTERNATIONAL CORPORATION   (United States)

Author keywords

Bacteriophage; Database; Detection; Electrospray Ionization; Integrated Virus Detection System; IVDS; Mass Spectrometry; MS2; Online Sample Processing; Proteomics; Purification; Separation; Virus; Virus Detection

Indexed keywords

BACTERIAL PROTEIN;

ARTICLE; BACTERIOPHAGE; DATA BASE; ESCHERICHIA COLI; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MS2 VIRUS; NONHUMAN; PRIORITY JOURNAL; SCORING SYSTEM; VIROGENESIS; VIRUS DETECTION; VIRUS INFECTION; VIRUS PURIFICATION;

ESCHERICHIA COLI;

EID: 34250699388     PISSN: 15376516     EISSN: 15376524     Source Type: Journal    
DOI: 10.1080/15376510601123195     Document Type: Article

References (48)

1. Anderson, G. M., and Purdy, W. C. 1979. Liquid chromatographic- fluorometric system for the determination of indoles in physiological samples. Anal. Chem. 51(2):283-286.
2. Bothner, B., Schneemann, A., Marshall, D., Reddy, V., Johnson, J. E., and Siuzdak, G. 1999. Crystallographically identical virus capsids display different properties in solution. Nat. Struct. Biol. 6:114-116.
3. Bussey, H., Storms, R. K., Ahmed, A., Albermann, K., Allen, E., Ansorge, W., Araujo, R., Aparicio, A., Barrell, B., Badcock, K., Benes, V., Botstein, D., Bowman, S., Bruckner, M., Carpenter, J., Cherry, J. M., Chung, E., Churcher, C., Coster, F., Davis, K., Davis, R. W., Dietrich, F. S., Delius, H., DiPaolo, T., Dubois, E., Düsterhöft, A., Duncan, M., Floeth, M., Fortin, N., Friesen, J. D., Fritz, C., Goffeau, A., Hall, J., Hebling, U., Heumann, K., Hilbert, H., Hillier, L., and other members of the Genome Sequencing Center, Hunicke-Smith, S., Hyman, R., Johnston, M., Kalman, S., Kleine, K., Komp, C., Kurdi, O., Lashkari, D., Lew, H., Lin, A., Lin, D., Louis, E. J., Marathe, R., Messenguy, F., Mewes, H. W., Mirtipati, S., Moestl, D., Müller-Auer, S., Namath, A., Nentwich, U., Oefner, P., Pearson, D., Petel, F. X., Pohl, T. M., Purnelle, B., Rajandream, M. A., Rechmann, S., Rieger, M., Riles, L., Roberts, D., Schäfer, M., Scharfe, M., Scherens, B., Schramm, S., Schröder, M., Sdicu, A. M., Tettelin, H., Urrestaraz, L. A., Ushinsky, S., Vierendeels, F., Vissers, S., Voss, H., Walsh, S. V., Wambutt, R., Wang, Y., Wedler, E., Wedler, H., Winnett, E., Zhong, W.-W., Zollner, A., Vo, D. H., and Hani, J. 1997. The nucleotide sequence of Saccharomyces cerevisiae chromosome XVI. Nature 387(6632 Suppl):103-105.
4. Cargile, B. J., Mcluckey, S. A., and Stephenson, J. L. 2001. Identification of bacteriophage MS2 coat protein from E. coli lysates via ion trap collisional activation of intact protein ions. Anal. Chem. 73:1277-1285.
5. Chong, B. E., Yan, F., Lubman, D. M., and Miller, F. R. 2001. Chromatofocusing nonporous reversed-phase high-performance liquid chromatography/electrospray ionization time-of-flight mass spectrometry of proteins from human breast cancer whole cell lysates: a novel two-dimensional liquid chromatography/mass spectrometry method. J. Rapid Commun. Mass Spectrom. 15:291-296.
6. Dai, Y., Li, L., Roser, D. C., and Long, S. R. 1999. Detection and identification of low-mass peptides and proteins from solvent suspensions of Escherichia coli by high performance liquid chromatography fractionation and matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun. Mass Spectrom. 13:73-78.
7. Davis, J. E., and Sinsheimer, R. L. 1963. The replication of bacteriophage MS2. 1. Transfer of parental nucleic acid to progeny phage. J. Mol. Biol. 6:203-207.
8. Dongre, A. R., Eng, J., and Yates, J. R. III. 1997. Emerging tandem-mass-spectrometry techniques for the rapid identification of proteins. Trends Biotechnol. 15:383.
9. Ember, L. R. 2001. Health aftermath of chemical tests on soldiers charted. Chem. Eng. News 79:27-32.
10. Farrah, S. R., Preston, D. R., Toranzos, G. A., Girard, M., Erdos, G. A., and Vasuhdivan, V. 1991. Use of modified diatomaceous earth for removal and recovery of viruses in water. Appl. Environ. Microbiol 57(9):2502-2506.
11. Fiers, W., Contreras, R., Duerinck, F., Haegeman, G., Iserentant, D., Merregaert, J., Jou, W. M., Molemans, F., Raeymaekers, A., Berghe, A. V., Volckaert, G., and Ysebaert, M. 1974. A-protein gene of bacteriophage MS2. Nature 260:500-507.
12. Fleischmann, R., Adams, M., White, O., Clayton, R., Kirkness, E., Kerlavage, A., Bult, C., Tomb, J., Dougherty, B., and Merrick, J. 1995. Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512.
13. Fox, A., Black, G. E., Fox, K., and Rostovtseva, S. J. 1993. Determination of carbohydrate profiles of Bacillus anthracis and Bacillus cereus including identification of O-methyl methylpentoses by using gas chromatography-mass spectrometry. J. Clin. Microbiol. 31:887-896.
14. Friedmann, A., Shlomai, J., and Becker, Y. 1977. Electron microscopy of herpes simplex virus DNA molecules isolated from infected cells by centrifugation in CsCl density gradients. J. Gen. Virol. 34(3):507-522.
15. Henderson, D. A. 1999. The looming threat of bioterrorism. Science 283:1279-1282.
16. Hu, J. Y., Ong, S. L., Song, L. F., Feng, Y. Y., Liu, W. T., Tan, T. W., Lee, L. Y., and Ng, W. J. 2003. Treatability of organic fractions derived from secondary effluent by reverse osmosis membrane. Water Res. 37(19):4801-4809.
17. Hurst, G. B., Doktycz, M. J., Vass, A. A., and Buchanan, M. V. 1996. Detection of bacterial DNA polymerase chain reaction products by matrix-assisted laser desorption/ionization mass spectrometry. J. Rapid Commun. Mass Spectrom. 10:377-382.
18. Jensen, P. K., Pasa-Tolic, L., Anderson, G. A., Horner, J. A., Lipton, M. S., Bruce. J. E., and Smith, R. D. 1999. Probing proteomes using capillary isoelectric focusing-electrospray ionization fourier transform ion cyclotron resonance mass spectrometry. Anal. Chem. 71:2076-2084.
19. Kachman, M. T., Wang, H., Schwartz, D. R., Cho, K. R., and Lubman, D. M. 2002. Differential screening and mass mapping of proteins from premalignant and cancer cell lines using nonporous reversed-phase HPLC coupled with mass spectrometric analysis. Anal. Chem. 74:1219-1227.
20. Kaneki, N., Xu, Y., Kumari, A., Halsall, H. B., and Heineman, W. R. 1994. Gamma-irradiation-induced grafting of poly (styrenesulfonate) to poly(tetrafluoroethylene) shielded microelectrodes. Anal. Chim. Acta 287:253-258.
21. Karty, J. A., Lato, S., and Reilly, J. P. 1998. Detection of the bacteriological sex factor in E. coli by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. J. Rapid Commun. Mass Spectrom. 12:625-629.
22. Kim, Y. J., Freas, A., and Fenselau, C. 1998. Analysis of viral glycoproteins by MALDI-TOF mass spectrometry. Anal. Chem. 70:3863.
23. Krishnamurthy, T., Rajamani, U., Ross, P. L., Jabbour, R., Nair, H., Eng, J., Yates, J., Davis, M. T., Stahl, D. C., and Lee, T. D. 2000. Mass spectral investigations on microorganisms. J. Toxicol. Toxin Rev. 19:95-117.
24. Kuzmanovic, D. A., Elashvili, I., Wick, C., O'Connell, C., and Krueger, S. 2003. Bacteriophage MS2: molecular weight and spatial distribution of the protein and RNA components by small-angle neutron scattering and virus counting. Structure (Camb). 11(11):1339-1348.
25. Laemmli, U. K., Molbert, E., Showe, M., and Kellenberger, E. 1970. Form-determining function of the genes required for the assembly of the head of bacteriophage T4. J. Mol. Biol. 49(1):99-113.
26. Maniatis, T., Fritsch, E. F., and Sambrook, J. 1982. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
27. McBride, M. T., Gammon, S., Pitesky, M., O'Brien, T. W., Smith, T., Aldrich, J., Langlois, R. G., Colston, B., and Venkateswaran, K. S. 2003. Multiplexed liquid arrays for simultaneous detection of simulants of biological warfare agents. Anal. Chem. 75:1924-1930.
28. Morse, A. 1995. Classification of bacteria. In Medical Microbiology, 20th ed.; Jawetz, E., Melnick, J. L.; Eds. London: Lange Medical, pp. 35-43
29. Niwa, O., Tabei, H., Solomon, B. P., Xie, F., and Kissinger, P. T. 1995. Improved detection limit for catecholamines using liquid chromatography- electrochemistry with a carbon interdigitated array microelectrode. J. Chromatogr. B Biomed. Appl. 670(1):21-28.
30. Niwa, O., Xu, Y., Halsall, H. B., and Heineman, W. R. 1993. Small-volume voltammetric detection of 4-aminophenol with interdigitated array electrodes and its application to electrochemical enzyme immunoassay. Anal. Chem. 65:1559-1563.
31. Pompeia, C., Ortis, F., and Armelin, M. C. 1996. Immunopurification of polyclonal antibodies to recombinant proteins of the same gene family. Biotechniques 6:986-988, 990.
32. Rowe, C. A., Tender, L. M., Feldstein, M. J., Golden, J. P., Scruggs, S. B., MacCraith, B. D., Cras, J. J., and Ligler, F. S. 1999. Array biosensor for simultaneous identification of bacterial, viral, and protein analytes. Anal. Chem. 71:3846-3852.
33. Sambrook, J., and Russell, D. W. 2001. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
34. Scott, T. M., Lukasik, J., and Farrah, S. R. 2002. Characterization of virus adsorption by using DEAE-sepharose and octyl-sepharoser. Appl. Environ. Microbiol. 8:3965-3968.
35. Smith, R. D., Loo, J. A., Edmonds, C. G., Baringa, C. J., and Udseth, H. R. 1990. Bicyclization of a weak oxytocin agonist produces a highly potent oxytocin antagonist. Anal. Chem. 62:882.
36. Strauss, J. H., and Sinsheimer, R. L. 1963. Purification and properties of bacteriophage MS2 and of its ribonucleic acid. J. Mol. Biol. 7:43-54.
37. Thomas, J. J., Falk, B., Fenselau, C., Jackman, J., and Ezzell, J. 1998. Viral characterization by direct analysis of capsid proteins. Anal. Chem. 70:3863-3867.
38. Thomas, J. H., Kim, S. K., Hesketh, P. J., Halsall, H. B., and Heineman, W. R. 2004. Bead-based electrochemical immunoassay for bacteriophage MS2. Anal. Chem. 76(10):2700-2707.
39. Tito, M. A., Tars, K., Valegard, K., Hajdu, J., and Robinson, C. 2000. Electrospray time-of-flight mass spectrometry of the intact MS2 virus capsid. JACS. 122:3550-3551.
40. Tong, W., Link, A., Eng, J. K., and Yates, J. R. 1999. Identification of proteins in complexes by solid-phase microextraction/multistep elution/capillary electrophoresis/tandem mass spectrometry. Anal. Chem. 71:2270-2278.
41. Valegard, K., Liljas, L., Fridborg, K., and Unge, T. 1990. The three-dimensional structure of the bacterial virus MS2. Nature 345:36-41.
42. Wehmeyer, K. R., Halsall, H. B., and Heineman, W. R. 1985. Heterogeneous enzyme immunoassay with electrochemical detection: competitive and "sandwich"-type immunoassays. Clin. Chem. 31:1546-1549.
43. Wijayawardhana, C. A., Wittstock, G., Halsall, H. B., and Heineman, W. R. 2000. Spatially addressed deposition and imaging of biochemically active bead microstructures by scanning electrochemical microscopy. Anal. Chem. 72:333-338.
44. Wick, C. H., Anderson, D., and McCubbin, P. E. May 1997. Characterization of the Integrated Virus Detection System (IVDS) Using MS-2 Bacteriophage, ECBC-TR-018.
45. Wick, C. H., and McCubbin, P. E. 1999a. Characterization of purified MS2 bacteriophage by the physical counting methodology used in the Integrated Virus Detection System (IVDS). Toxicol. Methods 9:245-252.
46. Wick, C. H., and McCubbin, P. E. 1999b. Purification of MS2 bacteriophage from complex growth media and resulting analysis by the Integrated Virus Detection System (IVDS). Toxicol. Methods 9:253-263.
47. Wick, C. H., McCubbin, P. E., and Birenzvige, A. November 2005. Detection and Identification of Viruses Using the Integrated Virus Detection System (IVDS), ECBC-TR-463.
48. Yates, J. R. 1998. Mass spectrometry and the age of the proteome. J. Mass Spectrom. 33:1-19.