Characterisation of community structur of bacteria in parallel mesophilic and thermophilic pilot scale anaerobe sludge digesters

Acta Microbiologica et Immunologica Hungarica

Volumn 54, Issue 1, 2007, Pages 47-55

  Tauber, T ^a   Berta, Brigitta ^a   Székely, Anna J ^a   Gyarmati, I ^b   Kékesi, Katalin ^a   Marialigeti K ^a   Tóth, Erika M ^a  

^a EÖTVÖS LORÁND UNIVERSITY   (Hungary)

^b Budapest Sewage Works Ltd   (Hungary)

Author keywords

Chemotaxonomic analysis; Community structure; Sludge digester; T RFLP

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); BACTEROIDETES; CLOSTRIDIA; ENTEROBACTERIACEAE; METHANOSAETA SP.; METHANOSARCINA; METHANOSARCINA SP.; POSIBACTERIA;

BACTERIAL DNA; FATTY ACID; PHOSPHOLIPID; QUINONE DERIVATIVE;

ANAEROBIC GROWTH; ARCHAEBACTERIUM; ARTICLE; BACTERIUM; BACTEROIDETES; BIODIVERSITY; CHEMISTRY; CLASSIFICATION; DNA FINGERPRINTING; DNA SEQUENCE; ENTEROBACTERIACEAE; GENETICS; GRAM POSITIVE BACTERIUM; GROWTH, DEVELOPMENT AND AGING; HEAT; ISOLATION AND PURIFICATION; METHANOSARCINA; MICROBIOLOGY; POLYMERASE CHAIN REACTION; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEWAGE;

ANAEROBIOSIS; ARCHAEA; BACTERIA; BACTEROIDETES; BIODIVERSITY; DNA FINGERPRINTING; DNA, BACTERIAL; ENTEROBACTERIACEAE; FATTY ACIDS; GRAM-POSITIVE BACTERIA; HEAT; METHANOSARCINA; METHANOSARCINALES; PHOSPHOLIPIDS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; QUINONES; SEQUENCE ANALYSIS, DNA; SEWAGE;

EID: 34250669165     PISSN: 12178950     EISSN: 15882640     Source Type: Journal    
DOI: 10.1556/AMicr.54.2007.1.5     Document Type: Article

References (18)

1. Imachi, H., Sekiguchi, Y., Kamagata, Y., Loy, A., Qiu, Y-L., Hugenholtz, Ph., Kimura, N., Wagner, M., Ohashi, A., Harada, H.: Non-sulfate-reducing, syntrophic bacteria affiliated with Desulfotomaculum cluster I are widely distributed in methanogenic environments. Appl Environ Microbiol 72, 2080-2091 (2006).
2. 2. In: Ferry, J. G. (ed): Methanogenesis. New York, London, 1993, 209-252.
3. Ahring, B. K.: Methanogenesis in thermophilic biogas reactors. Antonie van Leeuwenhoek 67, 91-102 (1995).
4. Lane, D. J.: 16S/23S rRNA sequencing. In: Stackebrandt, E., Goodfellow, M. (eds): Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, 1991, 115-175.
5. Baker, G. C., Smith, J. J., Cowan, D. A.: Review and re-analysis of domain-specific 16S primers. J Microbiol Meth 55, 541-555 (2003).
6. Nikolausz, M., Márialigeti, K., Kovács, G.: Comparison of RNA- and DNA-based species diversity investigations in rhizoplane bacteriology with respect to chloroplast sequence exclusion. J Microbiol Meth 56, 365-373 (2004).
7. Smith, C. J., Danilowicz, B. S., Clear, A. K., Costello, F. J., Wilson, B., Meijer, W. G.: T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles. FEMS Microbiol Ecol 54, 375-380 (2005).
8. Snaidr, J., Amann, R., Huber, I., Ludwig, W., Schleifer, K. H.: Phylogenetic analysis and in situ identification of bacteria in activated sludge. Appl Environ Microbiol 63, 2884-2896 (1997).
9. Tóth, E. M., Tauber, T., Kovács, H., Bohus, V., Borsodi, A., Révész, S., Márialigeti, K.: Evaluation of biodiversity by respiratory quinone (RQ) and phospholipid fatty acids (PLFA) analyses in different soils and sediments. In: Chrǒnáková, A., Krištůfek, V., Elhottová, D., Malý, S. (eds): Present methods for investigation of biodiversity of microbial community in soils and substrates. Proceedings of the 9th Methodological workshop, Institute of Soil Biology, AS CR, České Budějovice, 2004, 31-37.
10. Chouari, R., Le Paslier, D., Daegelen, P., Ginestet, P., Weissenbach, J., Sghir, A.: Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 8, 1104-1115 (2005).
11. Wright, A. D. G., Pimm, C.: Improved strategy for presumptive identification of methanogens using 16S riboprinting. J Microbiol Methods 55, 337-349 (2003).
12. Lueders T., Friedrich M. W.: Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extract. Appl Environ Microbiol 69, 320-326 (2003).
13. Chouari R., Le Paslier D., Dauga C., Daegelen P., Weissenbach J., Sghir A.: Novel major bacterial candidate division within a municipal anaerobic sludge digester. Appl Environ Microbiol 71, 2145-2153 (2005).
14. Schink, B., Stams, A. J. M.: Obligately syntrophic bacteria: cultivation and biochemical studies. In: Dworkin, M. et al. (eds): The prokaryotes: an evolving electronic resource for the microbiological community. 3rd ed. release 3.7, November 2, 2001, Springer-Verlag, New York, http://link.springer-ny.com/link/service/books/10125/.
15. Etchebehere, C., Pavan, M. E., Zorzopulos, J., Soubes, M., Muxi, L.: Coprothermobacter platensis sp. nov., a new anaerobic proteolytic thermophilic bacterium isolated from an anaerobic mesophilic sludge. Int J Syst Bacteriol 48, 1297-1304 (1998).
16. Hu, H-Y., Fujie, K., Urano, K.: Development of a novel solid phase extraction method for the analysis of bacterial quinones in activated sludge with a higher reliability. J Biosci Bioeng 87, 378-382 (1999).
17. Kuivila, K. M., Murray, J. W., Devol, A. H.: Methane production, sulfate reduction and competition for substrates in the sediments of Lake Washington. Geochim Cosmochim Acta 53, 409-416 (1989).
18. Sonne-Hansen, J., Westermann, P., Ahring, B. K.: Kinetics of sulfate and hydrogen uptake by the thermophilic sulfate-reducing bacteria Thermodesulfobacterium sp. strain JSP and Thermodesulfovibrio sp. strain R1Ha3. Appl Environ Microbiol 65, 1304-1307 (1999).