Cloning of the Arthrobacter sp. FG1 dehalogenase genes and construction of hybrid pathways in Pseudomonas putida strains

Applied Microbiology and Biotechnology

Volumn 75, Issue 5, 2007, Pages 1111-1118

  Radice, Francesca ^a   Orlandi, Viviana ^a   Massa, Valentina ^a   Battini, Vanessa ^a   Bertoni, Giovanni ^b   Reineke, Walter ^c   Barbieri, Paola ^a  

^a Dipto Biol Strutturale Funzionale   (Italy)

^b UNIVERSITY OF MILAN   (Italy)

^c UNIVERSITY OF WUPPERTAL   (Germany)

Author keywords

4 Chlorobenzoic acid; 4 Chlrotoluene; Dehalogenase; fcb genes

Indexed keywords

4-CHLOROBENZOIC ACID; 4-CHLROTOLUENE; DEHALOGENASE; FCB GENES;

DEHALOGENATION; GENES; HYDROLYSIS; ORGANIC ACIDS;

GENETIC ENGINEERING;

4 CHLOROBENZOIC ACID; 4 CHLOROTOLUENE; DEHALOGENASE; ENZYME; TOLUENE DERIVATIVE; UNCLASSIFIED DRUG;

CLONAL ORGANISM; ENZYME; GENE; GENE EXPRESSION;

ARTHROBACTER; ARTICLE; CATABOLISM; CONTROLLED STUDY; DEHALOGENATION; FCB GENE; GENE; GENE EXPRESSION; GENE SEQUENCE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PSEUDOMONAS PUTIDA;

ARTHROBACTER; CHLOROBENZOATES; CLONING, MOLECULAR; GENETIC ENGINEERING; PSEUDOMONAS PUTIDA; TOLUENE;

ARTHROBACTER; ARTHROBACTER SP.; PSEUDOMONAS PUTIDA;

EID: 34250615551     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-007-0906-z     Document Type: Article

References (42)

1. Abril MA, Michan C, Timmis KN, Ramos JL (1989) Regulator and enzyme specificities of the TOL plasmid-encoded upper pathway for degradation of aromatic hydrocarbons and expansion of the substrate range of the pathway. J Bacteriol 171:6782-6790
2. Adriaens P, Kohler HP, Kohler-Staub D, Focht DD (1989) Bacterial dehalogenation of chlorobenzoates and coculture biodegradation of 4,4′-dichlorobiphenyl. Appl Environ Microbiol 55:887-892
3. Blatny JM, Brautaset T, HC Winther-Larsen, Haugan K, Valla S (1997) Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon. Appl Environ Microbiol 63:370-379
4. Brinkmann U, Reineke W (1992) Degradation of chlorotoluenes by in vivo constructed hybrid strains: problems of enzyme specificity, induction and prevention of meta-pathway. FEMS Microbiol Lett 75:81-87
5. Chae JC, Kim Y, Kim YC, Zylstra GJ, Kim CK (2000) Genetic structure and functional implication of the fcb gene cluster for hydrolytic dechlorination of 4-chlorobenzoate from Pseudomonas sp. DJ-12. Gene 258:109-116
6. Chang KH, Liang PH, Beck W, Scholten JD, Dunaway-Mariano D (1992) Isolation and characterization of the three polypeptide components of 4-chlorobenzoate dehalogenase from Pseudomonas sp. strain CBS-3. Biochemistry 31:5605-5610
7. Chaudhry GR, Chapalamadugu S (1991) Biodegradation of halogenated organic compounds. Microbiol Rev 55:59-79
8. Deutscher MP (1990) Methods in enzymology. Guide to protein purification, vol 185. Academic, San Diego, CA, USA
9. Fetzner S, Lingens F (1994) Bacterial dehalogenases: biochemistry, genetics, and biotechnological applications. Microbiol Rev 58:641-685
10. Franklin FCH, Bagdasarian M, Bagdasarian MM, Timmis KN (1980) Molecular and functional analysis of the TOL plasmid pWWO from Pseudomonas putida and cloning of genes for entire regulated aromatic ring meta cleavage pathway. Proc Natl Acad Sci U S A 78:7458-7462
11. Freier RK (1974) Wasseranalyse, 2nd edn. Walter de Gruyter, Berlin, Germany
12. Gartemann KH, Eichenlaub R (2001) Isolation and characterization of IS1409, an insertion element of 4-chlorobenzoate-degrading Arthrobacter sp. strain TM1, and development of a system for transposon mutagenesis. J Bacteriol 183:3729-3736
13. Göbel M, Kranz OH, Kaschabek SR, Schmidt E, Pieper DH, Reineke W (2004) Microorganisms degrading chlorobenzene via a meta-cleavage pathway harbor highly similar chlorocatechol 2,3-dioxygenase-encoding gene clusters. Arch Microbiol 182:147-156
14. Häggblom MM (1992) Microbial breakdown of halogenated aromatic pesticides and related compounds. FEMS Microbiol Rev 103:29-72
15. Haigler BE, Spain JC (1989) Degradation of p-chlorotoluene by a mutant of Pseudomonas sp. strain JS6. Appl Environ Microbiol 55:372-379
16. Higgins D, Thompson J, Gibson T, Thompson JD, Higgins DG, Gibson TJ (1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
17. Holloway P, Trevors JT, Lee H (1998) A colorimetric assay for detecting haloalkane dehalogenase activity. J Microbiol Methods 32:31-36
18. Hopwood DA, Bibb MJ, Chater KF, Kieser T, Bruton CJ, Kieser HM, Lydiate CP, Smith CP, Ward JM, Schrempf H (1985) Genetic manipulation of Streptomyces-a laboratory manual. The John Innes Foundation, Norwich
19. Horowitz A, Suflita JM, Tiedje JM (1983) Reductive dehalogenations of halobenzoates by anaerobic lake sediment microorganisms. Appl Environ Microbiol 45:1459-1465
20. Hrywna Y, Tsoi TV, Maltseva OV, Quensen JF 3rd, Tiedje JM (1999) Construction and characterization of two recombinant bacteria that grow on ortho-and para-substituted chlorobiphenyls. Appl Environ Microbiol 65:2163-2169
21. Kaschabek SR, Kasberg T, Müller D, Mars AE, Janssen DB, Reineke W (1998) Degradation of chloroaromatics: purification and characterization of a novel type of chlorocatechol 2,3-dioxygenase of Pseudomonas putida GJ31. J Bacteriol 180:296-302
22. Klages U, Lingens F (1979) Degradation of 4-chlorobenzoic acid by a Nocardia sp. FEMS Microbiol Lett 6:201-203
23. Marks TS, Smith ARW, Quirk AV (1984) Degradation of 4-chlorobenzoic acid by Arthrobacter sp. Appl Environ Microbiol 48:1020-1025
24. Miller JH (1972) Experiments in molecular genetics. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
25. Müller R, Oltmanns RH, Lingens F (1988) Enzymatic dehalogenation of 4-chlorobenzoate by extracts from Arthrobacter sp. SU DSM 20407. Biol Chem Hoppe Seyler 369:567-571
26. Nikodem P, Hecht V, Schlomann M, Pieper DH (2003) New bacterial pathway for 4- and 5- chlorosalicylate degradation via 4-chlorocatechol and maleylacetate in Pseudomonas sp. strain MT1. J Bacteriol 185:6790-6800
27. Panke S, Sanchez-Romero JM, de Lorenzo V (1998) Engineering of quasi-natural Pseudomonas putida strains for toluene metabolism through an ortho-cleavage degradation pathway. Appl Environ Microbiol 64:748-751
28. Pieper DH, Reineke W (2000) Engineering bacteria for bioremediation. Curr Opin Biotechnol 11:262-270
29. Pollmann K, Beil S, Pieper DH (2001) Transformation of chlorinated benzenes and toluenes by Ralstonia sp. strain PS12 tecA (tetrachlorobenzene dioxygenase) and tecB (chlorobenzene dihydrodiol dehydrogenase) gene products. Appl Environ Microbiol 67:4057-4063
30. Reineke W, Knackmuss H-J (1980) Hybrid pathway for chlorobenzoate metabolism in Pseudomonas sp. B13 derivatives. J Bacteriol 142:467-473
31. Reineke W (1998) Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly. Annu Rev Microbiol 52:287-331
32. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd edn. Cold Spring Harbour Laboratory Press, Cold Spring Harbour, New York
33. Schmitz A, Gartemann KH, Fiedler J, Grund E, Eichenlaub R (1992) Cloning and sequence analysis of genes for dehalogenation of 4-chlorobenzoate from Arthrobacter sp. strain SU. Appl Environ Microbiol 58:4068-4071
34. Thiele J, Müller R and Lingens F (1987) Initial characterization of 4-chlorobenzoate dehalogenase from Pseudomonas sp. CBS3. FEMS Microbiol Lett 41:115-119
35. Thoden JB, Zhuang Z, Dunaway-Mariano D, Holden HM (2003) The structure of 4-hydroxybenzoyl-CoA thioesterase from Arthrobacter sp. strain SU. J Biol Chem 278:43709-43716
36. Tsoi TV, Zaitsev GM, Plotnikova EG, Kosheleva IA, Boronin AM (1991) Cloning and expression of the Arthrobacter globiformis KZT1 fcbA gene encoding dehalogenase (4-chlorobenzoate-4-hydroxylase) in Escherichia coli. FEMS Microbiol Lett 65:165-169
37. van den Tweel WJ, Kok JB, de Bont JAM (1987) Reductive dechlorination of 2,4-dichlorobenzoate to 4-chlorobenzoate and hydrolytic dehalogenation of 4-chloro-, 4-bromo-, and 4-iodobenzoate by Alcaligenes denitrificans NTB-1. Appl Environ Microbiol 53:810-815
38. Vieira J, Messing J (1982) The pUC plasmid and M13mp7 derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268
39. Widmer F, Seidler RJ, Gillevet PM, Watrud LS, Di Giovanni GD (1998) A highly selective PCR protocol for detecting 16S rRNA genes of the genus Pseudomonas (sensu stricto) in environmental samples. Appl Environ Microbiol 64:2545-2553
40. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M13 phage cloning vectors and host strains: nucleotide sequences of M13mp18 and pUC19 vectors. Gene 33:103-119
41. Zaitsev GM, Karasevich YN (1985) Primary steps in metabolism of 4-chlorobenzoate in Arthrobacter globiformis. Mikrobiologiya 50:423-428, in Russian
42. Zhuang Z, Gartemann KH, Eichenlaub R, Dunaway-Mariano D (2003) Characterization of the 4-hydroxybenzoyl-coenzyme A thioesterase from Arthrobacter sp. strain SU. Appl Environ Microbiol 69:2707-2711