Crystallization and preliminary X-ray diffraction studies of the ferredoxin reductase component in the Rieske nonhaem iron oxygenase system carbazole 1,9a-dioxygenase

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 63, Issue 6, 2007, Pages 499-502

  Ashikawa, Yuji ^a,c   Uchimura, Hiromasa ^a   Fujimoto, Zui ^b   Inoue, Kengo ^a   Noguchi, Haruko ^a   Yamane, Hisakazu ^a   Nojiri, Hideaki ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

^c RIKEN HARIMA INSTITUTE   (Japan)

Author keywords

Angular dioxygenases; Carbazole; Electron transfer; NAD(P)H:ferredoxin oxidoreductases; Rieske nonhaem iron oxygenase system

Indexed keywords

BACTERIAL PROTEIN; CARBAZOLE 1,9A DIOXYGENASE; CARBAZOLE 1,9A-DIOXYGENASE; DIOXYGENASE; FERREDOXIN NICOTINAMIDE ADENINE DINUCLEOTIDE PHOSPHATE REDUCTASE; IRON SULFUR PROTEIN; NONHEME IRON PROTEIN; RIESKE IRON-SULFUR PROTEIN; UBIQUINOL CYTOCHROME C REDUCTASE; UNCLASSIFIED DRUG;

ARTICLE; CHEMISTRY; CRYSTALLIZATION; X RAY DIFFRACTION;

BACTERIAL PROTEINS; CRYSTALLIZATION; DIOXYGENASES; ELECTRON TRANSPORT COMPLEX III; FERREDOXIN-NADP REDUCTASE; IRON-SULFUR PROTEINS; NONHEME IRON PROTEINS; X-RAY DIFFRACTION;

EID: 34249951772     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S174430910702163X     Document Type: Article

References (30)

1. Ashikawa, Y., Fujimoto, Z., Noguchi, H., Habe, H., Omori, T., Yamane, H. & Nojiri, H. (2005). Acta Cryst. F61, 577-580.
2. Ashikawa, Y., Fujimoto, Z., Noguchi, H., Habe, H., Omori, T., Yamane, H. & Nojiri, H. (2006). Structure, 14, 1779-1789.
3. Batie, C. J., Ballou, D. P. & Correll, C. C. (1991). Chemistry and Biochemistry of Flavoenzymes, Vol. 3, edited by F. Muller, pp. 543-556. Boca Raton: CRC Press.
4. Bradford, M. M. (1976). Anal. Biochem. 72, 248-254.
5. Bressler, D. C. & Fedorak, P. M. (2000). Can. J. Microbiol. 46, 397-409.
6. Correll, C. C., Batie, C. J., Ballou, D. P. & Ludwig, M. L. (1992). Science, 258, 1604-1610.
7. Ferraro, D. J., Gakhar, L. & Ramaswamy, S. (2005). Biochem. Biophys. Res. Commun. 338, 175-190.
8. Fukuda, M., Yasukouchi, Y., Kikuchi, Y., Nagata, Y., Kimbara, K., Horiuchi, H., Takagi, M. & Yano, K. (1994). Biochem. Biophys. Res. Commun. 202, 850-856.
9. Furukawa, K., Suenaga, H. & Goto, M. (2004). J. Bacteriol. 186, 5189-5196.
10. Habe, H. & Omori, T. (2003). Biosci. Biotechnol. Biochem. 67, 225-243.
11. Haigler, B. E. & Gibson, D. T. (1990). J. Bacteriol. 172, 465-468.
12. Inoue, K., Habe, H., Yamane, H. & Nojiri, H. (2006). Appl. Environ. Microbiol. 72, 3321-3329.
13. Inoue, K., Habe, H., Yamane, H., Omori, T. & Nojiri, H. (2005). FEMS Microbiol. Lett. 245, 145-153.
14. Inoue, K., Widada, J., Nakai, S., Endoh, T., Urata, M., Ashikawa, Y., Shintani, M., Saiki, Y., Yoshida, T., Habe, H., Omori, T. & Nojiri, H. (2004). Biosci. Biotechnol. Biochem. 68, 1467-1480.
15. Karlsson, A., Beharry, Z. M., Eby, D. M., Coulter, E. D., Neidle, E. L., Kurtz, D. M. Jr, Eklund, H. & Ramaswamy, S. (2002). J. Mol. Biol. 318, 261-272.
16. Mason, J. R. & Cammack, R. (1992). Annu. Rev. Microbiol. 46, 277-305.
17. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
18. Nam, J.-W., Noguchi, H., Fujimoto, Z., Mizuno, H., Ashikawa, Y., Abo, M., Fushinobu, S., Kobashi, K., Wakagi, T., Iwata, K., Yoshida, T., Habe, H., Yamane, H., Omori, T. & Nojiri, H. (2005). Proteins, 58, 779-789.
19. Nam, J.-W., Nojiri, H., Noguchi, H., Uchimura, H., Yoshida, T., Habe, H., Yamane, H. & Omori, T. (2002). Appl. Environ. Microbiol. 68, 5882-5890.
20. Nojiri, H., Ashikawa, Y., Noguchi, H., Nam, J.-W., Urata, M., Fujimoto, Z., Yoshida, T., Habe, H. & Omori, T. (2005). J. Mol. Biol. 351, 355-370.
21. Nojiri, H. & Omori, T. (2002). Biosci. Biotechnol. Biochem. 66, 2001-2016.
22. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
23. Sambrook, J. & Russell, D. W. (2001). Molecular Cloning. A Laboratory Manual, 3rd ed. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
24. Sato, S., Nam, J.-W., Kasuga, K., Nojiri, H., Yamane, H. & Omori, T. (1997). J. Bacteriol. 179, 4850-4858.
25. Senda, T., Yamada, T., Sakurai, N., Kubota, M., Nishizaki, T., Masai, E., Fukuda, M. & Mitsuidagger, Y. (2000). J. Mol. Biol. 304, 397-410.
26. Subramanian, V., Liu, T.-N., Yeh, W.-K., Narro, M. & Gibson, D. T. (1981). J. Biol. Chem. 256, 2723-2730.
27. Subramanian, V., Liu, T.-N., Yeh, W.-K., Serdar, C. M., Wakett, L. P. & Gibson, D. T. (1985). J. Biol. Chem. 260, 2355-2363.
28. Urata, M., Uchimura, H., Noguchi, H., Sakaguchi, T., Takemura, T., Eto, K., Habe, H., Omori, T., Yamane, H. & Nojiri, H. (2006). Appl. Environ. Microbiol. 72, 3206-3216.
29. Wittich, R.-M. (1998). Appl. Microbiol. Biotechnol. 49, 489-499.
30. Yu, C. L., Liu, W., Ferraro, D. J., Brown, E. N., Parales, J. V., Ramaswamy, S., Zylstra, G. J., Gibson, D. T. & Parales, R. E. (2007). J. Ind. Microbiol. Biotechnol. 34, 311-324.