Identification of bacteria isolated from diseased Neungee mushroom, Sarcodon aspratus

Journal of Basic Microbiology

Volumn 47, Issue 1, 2007, Pages 31-39

  Lee, Young Nam ^a   Koo, Chang Duck ^a  

^a Chungbuk National University   (South Korea)

Author keywords

16s rDNA sequence analysis; Bacterial identification; Burkholderia cepacia complex; Burkholderia stabilis; Cellular fatty acid analysis; Methylobacterium radiotolerans; Neungee mushroom (Sarcodon aspratus); Scanning microscopy

Indexed keywords

BACTERIA (MICROORGANISMS); BASIDIOMYCOTA; BURKHOLDERIA; BURKHOLDERIA CEPACIA COMPLEX; BURKHOLDERIA STABILIS; CYANOBACTERIA; METHYLOBACTERIUM; METHYLOBACTERIUM RADIOTOLERANS; NEGIBACTERIA; SARCODON ASPRATUS; SOLANUM TUBEROSUM;

BACTERIAL DNA; FATTY ACID; RIBOSOME DNA;

ARTICLE; BACTERIUM IDENTIFICATION; BASIDIOMYCETES; BURKHOLDERIA; CLASSIFICATION; ISOLATION AND PURIFICATION; METABOLISM; METHYLOBACTERIUM; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE HOMOLOGY; ULTRASTRUCTURE;

BACTERIAL TYPING TECHNIQUES; BASIDIOMYCOTA; BURKHOLDERIA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; METHYLOBACTERIUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 34249930781     PISSN: 0233111X     EISSN: 15214028     Source Type: Journal    
DOI: 10.1002/jobm.200610151     Document Type: Article

References (26)

1. Atlas, R.M., 1993a. Handbook of Microbiological Media, p. 97. CRC Press, Ann Arbor, MI, USA.
2. Atlas, R.M., 1993b. Handbook of Microbiological Media, p. 582. CRC Press, Ann Arbor, MI, USA.
3. Ban, O.-H., Han, S.-S. and Lee, Y.N., 2003. Identification of a potent protease-producing bacterial isolate, Bacillus amyloliquefaciens CMB01. Ann. Microbiol., 53, 95-103.
4. Bessette, A., 1984. Distribution of brown blotch bacteria in wild and cultivated species of basidiomycetes. Appl. Environ. Microbiol., 48, 878-880.
5. Castle, A.J., Sivanesan, D., Dobbi, C. and Rinker, D.L., 2004. Causal agents of bacterial blotch on cultivated Agaricus bisporus in Canada. Science and Cultivation of Edible and Medicinal Fungi, 16, 441-447.
6. Chun, J., 1995. Computer-assisted classification and identification of Actinomycetes, Ph. D. Thesis, Univ. of Newcastle, Newcastle upon Tyne, UK.
7. Chun, J. and Bae, K.S., 2000. Phylogenetic analysis of Bacillus subtilis and related taxa based on partial gyrA gene sequences. Antonie van Leeuwenhoek, 78, 123-127.
8. Doronina, N.V., Trotsenko, Y.A., Kuznetsov, B.B., Tourova, T.P. and Salkinoja-Salonen, M.S., 2002. Methylobacterium suomiense sp. nov. and Methyloacterium lusitanum sp. nov., aerobic, pink-pigmented, facultatively methylotrophic bacteria. Int. J. Syst. Evol. Microbiol., 52, 773-776.
9. 2-fixing isolates from rice in Vietnam. Int. J. Sys. Bacteriol., 45, 274-289.
10. Jukes, T.H. and Cantor, C.R., 1969. Evolution of protein molecules. In: Mammalian Protein Metabolism (Munro, H.N., Editor), pp. 21-132. Academic Press, New York.
11. Kim, M.K., Im, W.-T., Ohta, H., Lee, M. and Lee, S.-T., 2005. Sphingopyxis granuli sp. nov., a β-glucosidase-producing bacterium in the family Sphingomonadaceae in α-4 subclass of the Proteobacteria. J. Microbiol., 43, 152-157.
12. Kim, H.E., Park, J.I., Shin, W.S., Kim, J.S., Shin, C.S. and Koo, C.D., 2000. Suggestions for developing the cultivation technology of mycorrhizal mushrooms. In: Proceedings of the 2nd International Symposium on New Horizon of Bioscience in Forest Product Field, pp. 58-62. Chungbuk National University, Chenogju, Chungbuk, Korea.
13. Kim, H.E., Koo, C.D., Kim, J.S., Park, J.I., Shin, W.S. and Shin, C.S., 2002. Ecological characteristics of below-ground ectomycorrhizal colony of Sarcodon aspratus in oak tree stands. J. Kor. For. Soc., 91, 457-464.
14. Liu, P.-C., Lin, J.-Y., Hsiao, P.-T. and Lee, K.-K., 2004. Isolation and characterization of pathogenic Vibrio alginolyticus from diseased cobia, Rachycentron canadum. J. Basic Microbiol., 44, 23-28.
15. Maidak, B.L., Olsen, G.J., Larsen, N., Overbeek, R, MaCaughey, M.J. and Woese, C.R., 1996. The ribosomal Database project (RDP). Nucleic acid Res., 24, 82-85.
16. McCabe, K.M., Zhang, Y.-H., Huang, B.-L., Wager, E.A. and McCabe, E.R.B., 1999. Bacterial species identification after DNA amplification with a universal primer pair. Mol. Gene. Metabol., 66, 206-211.
17. Munsch, P., Geoffroy, V.A., Alatossava, T. and Meyer, J.-M., 2000. Application of siderotyping for characterization of Pseudomonas tolaasii and "Pseudomonas reactans" isolates associated with brown blotch disease of cultivated mushrooms. Appl. Environ. Microbiol., 66, 4834-4841.
18. Park, M.-S., Jung, S. R., Lee, M. S., Kim, K.O., Do, J.O., Lee, K.H., Kim, S.B. and Bae, K.S., 2005. Isolation and characterization of bacteria associated with two sand dune plant species, Calystegia soldanella and Elymus mollis. J. Microbiol., 43, 219-227.
19. Pitcher, D.G., Saunders, N.A. and Owen, R.J., 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol., 8, 151-156.
20. Sasser, M., 1990. Identification of bacteria by gas chromatography of cellular fatty acid. MIDI technical Note 101. Newark, DE: MIDI Inc.
21. Saitou, N. and Nei, M., 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
22. Seong, C.N., Kim, Y.S., Baik, K.S., Choi, S.K., Kim, M.B., Kim, S.B. and Goodfellow, M., 2003. Tsukamurella sunchonensis sp. nov., a bacterium associated with foam in activated sludge. J. Microbiol., 41, 83-88.
23. Smibert, R.M. and Krieg, N. R., 1981. General characterization, Chp. 20. In: Manual of Methods for General Bacteriology (Gerhart, P., Editor-in-Chief), pp. 411-443. ASM, Washington, DC, USA.
24. Song, J.-S., Lee, D.H., Lee, K. and Kim, C.-K., 2003. Characteristics of several bacterial isolates capable of degrading chloroaliphatic compounds via hydrolytic dechlorination. J. Microbiol., 41, 277-283.
25. Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F. and Higgins, D.G., 1997. The CLUSTAL X windows interface: flexible strategies for multiple sequence alignment by quality analysis tools. Nucleic Acids Res., 24, 4876-4882.
26. Weisburg, W.G., Barns, S.M., Pelletier, D.A. and Lane, D.J., 1991. 16S ribosomal DNA amplification for phylogenetic study. J. Bacteriol., 173, 697-703.