-
1
-
-
0025099312
-
Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
-
Amann RI, Krumholz L, Stahl DA (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J Bacteriol 172:762-770
-
(1990)
J Bacteriol
, vol.172
, pp. 762-770
-
-
Amann, R.I.1
Krumholz, L.2
Stahl, D.A.3
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
0035210037
-
Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda: Loliginidae)
-
Barbieri E, Paster BJ, Hughes D, Zurek L, Moser DP, Teske A, Sogin ML (2001) Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda: Loliginidae). Environ Microbiology 3:151-167
-
(2001)
Environ Microbiology
, vol.3
, pp. 151-167
-
-
Barbieri, E.1
Paster, B.J.2
Hughes, D.3
Zurek, L.4
Moser, D.P.5
Teske, A.6
Sogin, M.L.7
-
5
-
-
33747335397
-
Phylogeny of 16S rRNA, Ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5′-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas
-
Blazejak A, Kuever J, Erséus C, Amann R, Dubilier N (2006) Phylogeny of 16S rRNA, Ribulose 1,5-bisphosphate carboxylase/oxygenase, and adenosine 5′-phosphosulfate reductase genes from gamma- and alphaproteobacterial symbionts in gutless marine worms (Oligochaeta) from Bermuda and the Bahamas. Appl Environ Microbiol 72:5527-5536
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5527-5536
-
-
Blazejak, A.1
Kuever, J.2
Erséus, C.3
Amann, R.4
Dubilier, N.5
-
6
-
-
0017387998
-
The squid accessory nidamental gland, ultrastructure and association with bacteria
-
Bloodgood RA (1977) The squid accessory nidamental gland, ultrastructure and association with bacteria. Tissue and Cell 9:197-208
-
(1977)
Tissue and Cell
, vol.9
, pp. 197-208
-
-
Bloodgood, R.A.1
-
7
-
-
0024852342
-
Catalyzed reporter deposition, a novel method of signal amplification: Application to immunoassays
-
Bobrow MN, Harris TD, Shaughnessy KJ, Litt GJ (1989) Catalyzed reporter deposition, a novel method of signal amplification: Application to immunoassays. J Immunol Methods 125:279-285
-
(1989)
J Immunol Methods
, vol.125
, pp. 279-285
-
-
Bobrow, M.N.1
Harris, T.D.2
Shaughnessy, K.J.3
Litt, G.J.4
-
8
-
-
0342484911
-
Ammonia production in cephalopods: Physiological and evolutionary aspects
-
Boucher-Rodoni R, Mangold K (1994) Ammonia production in cephalopods: physiological and evolutionary aspects. Mar Fresh Behav Physiol 25:53-60
-
(1994)
Mar Fresh Behav Physiol
, vol.25
, pp. 53-60
-
-
Boucher-Rodoni, R.1
Mangold, K.2
-
9
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM (2005) The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33:294-296
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 294-296
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
10
-
-
8744311626
-
NO means « yes » in the squid-vibrio symbiosis: Nitric oxide (NO) during the initial stages of beneficial association
-
Davidson SK, Koropatnick TA, Kossmehl R, Sycuro L, McFall-Ngai MJ (2004) NO means « yes » in the squid-vibrio symbiosis: Nitric oxide (NO) during the initial stages of beneficial association. Cell Microbiol 6:1139-1151
-
(2004)
Cell Microbiol
, vol.6
, pp. 1139-1151
-
-
Davidson, S.K.1
Koropatnick, T.A.2
Kossmehl, R.3
Sycuro, L.4
McFall-Ngai, M.J.5
-
11
-
-
0037671502
-
Vibrio lentus associated with diseased wild octopus (Octopus vulgaris)
-
Farto R, Armada SP, Montes M, Guisande JA, Perez MJ, Nieto TP (2003) Vibrio lentus associated with diseased wild octopus (Octopus vulgaris). J Invertebr Pathol 83:149-56
-
(2003)
J Invertebr Pathol
, vol.83
, pp. 149-156
-
-
Farto, R.1
Armada, S.P.2
Montes, M.3
Guisande, J.A.4
Perez, M.J.5
Nieto, T.P.6
-
12
-
-
34249905354
-
-
University of Washington, Seattle
-
Felsentein J. (1993) Phylip WebPHYLIP, Version 1.3, University of Washington, Seattle http://sdmc.krdl.ord.sg:8080/~lxzhang/phylip
-
(1993)
Phylip WebPHYLIP Version 1.3
-
-
Felsentein, J.1
-
13
-
-
0034694380
-
The use and selection of probiotic bacteria for use in the culture of larval organisms
-
Gomez-Gil B, Roque A, Turnbull JF (2000) The use and selection of probiotic bacteria for use in the culture of larval organisms. Aquaculture 191:259-270
-
(2000)
Aquaculture
, vol.191
, pp. 259-270
-
-
Gomez-Gil, B.1
Roque, A.2
Turnbull, J.F.3
-
14
-
-
0034031284
-
Phylogenetic characterisation of bacterial symbionts in the accessory nidamental glands of the sepioid S. officinalis (Cephalopoda: Decapoda)
-
Grigioni S, Boucher-Rodoni R, Demarta A, Tonolla M, Peduzzi R (2000) Phylogenetic characterisation of bacterial symbionts in the accessory nidamental glands of the sepioid S. officinalis (Cephalopoda: Decapoda). Mar Biol 136:217-222
-
(2000)
Mar Biol
, vol.136
, pp. 217-222
-
-
Grigioni, S.1
Boucher-Rodoni, R.2
Demarta, A.3
Tonolla, M.4
Peduzzi, R.5
-
15
-
-
0041495078
-
-
Hall T (1997-2001) BioEdit. http://wwwmbioncsu.edu/BioEdit/bioedit.html
-
(1997)
BioEdit
-
-
Hall, T.1
-
16
-
-
0035062712
-
Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola
-
Hentschel U, Schmid M, Wagner M, Fieseler L, Gernert C, Hacker J (2001) Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola. FEMS Microbiol Ecol 35:305-312
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 305-312
-
-
Hentschel, U.1
Schmid, M.2
Wagner, M.3
Fieseler, L.4
Gernert, C.5
Hacker, J.6
-
17
-
-
0032704521
-
Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents
-
Holmström C, Kjelleberg S (1999) Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30:285-293
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 285-293
-
-
Holmström, C.1
Kjelleberg, S.2
-
18
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P, (2004) Bellerophon: A program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
19
-
-
0031885603
-
Impact of conditions of cultivation and adsorption on antimicrobial activity of marine bacteria
-
Ivanova EP, Nicolau DV, Yumoto N, Taguchi T, Okamoto K, Tatsu Y, Yoshikawa S (1998) Impact of conditions of cultivation and adsorption on antimicrobial activity of marine bacteria. Mar Biol 130:545-551
-
(1998)
Mar Biol
, vol.130
, pp. 545-551
-
-
Ivanova, E.P.1
Nicolau, D.V.2
Yumoto, N.3
Taguchi, T.4
Okamoto, K.5
Tatsu, Y.6
Yoshikawa, S.7
-
20
-
-
0031892254
-
Bacterial symbionts colonize the accessory nidamental gland of the squid Loligo opalescens via horizontal transmission
-
Kaufman MR, Ikeda Y, Patton C, Van Dykhuizen G, Epel D (1998) Bacterial symbionts colonize the accessory nidamental gland of the squid Loligo opalescens via horizontal transmission. Biol Bull 194:36-43
-
(1998)
Biol Bull
, vol.194
, pp. 36-43
-
-
Kaufman, M.R.1
Ikeda, Y.2
Patton, C.3
Van Dykhuizen, G.4
Epel, D.5
-
21
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
22
-
-
0345561028
-
-
Fish Health Section, Asian Fisheries Society, Manila
-
Lavilla-Pitogo CR, Albright LJ, Paner MG, Sunaz NA, (1992) Studies on the source of luminescent Vibrio harveyi in Penaeus monodon hatcheries. Disease in Asian aquaculture I. Fish Health Section, Asian Fisheries Society, Manila, pp 157-164
-
(1992)
Studies on the Source of Luminescent Vibrio Harveyi in Penaeus Monodon Hatcheries. Disease in Asian Aquaculture I
, pp. 157-164
-
-
Lavilla-Pitogo, C.R.1
Albright, L.J.2
Paner, M.G.3
Sunaz, N.A.4
-
23
-
-
0033678704
-
Ribotyping of Vibrio populations associated with cultured oysters (Ostrea edulis)
-
Macian MC, Garay E, Gonzalez-Candelas F, Pujalte MJ, Aznar R (2000) Ribotyping of Vibrio populations associated with cultured oysters (Ostrea edulis). Syst Appl Microbiol 23:409-417
-
(2000)
Syst Appl Microbiol
, vol.23
, pp. 409-417
-
-
Macian, M.C.1
Garay, E.2
Gonzalez-Candelas, F.3
Pujalte, M.J.4
Aznar, R.5
-
24
-
-
0036132040
-
Gorgonian s mass mortality during the 1999 late summer in French Mediterranean coastal waters: The bacterial hypothesis
-
Martin Y, Bonnefont JL, Chancerelle L (2002) Gorgonians mass mortality during the 1999 late summer in French Mediterranean coastal waters: The bacterial hypothesis. Water Res 36:779-782
-
(2002)
Water Res
, vol.36
, pp. 779-782
-
-
Martin, Y.1
Bonnefont, J.L.2
Chancerelle, L.3
-
25
-
-
0026357239
-
Symbiotic recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism
-
McFall-Ngai MJ, Ruby EG (1991) Symbiotic recognition and subsequent morphogenesis as early events in an animal-bacterial mutualism. Science 254:1491-1494
-
(1991)
Science
, vol.254
, pp. 1491-1494
-
-
McFall-Ngai, M.J.1
Ruby, E.G.2
-
26
-
-
33744537788
-
Genotypic diversity of Vibrio isolates associated with turbot (Scophthalmus maximus) culture
-
Montes M, Farto R, Perez MJ, Armada SP, Nieto TP (2006) Genotypic diversity of Vibrio isolates associated with turbot (Scophthalmus maximus) culture. Res Microbiol 157:487-495
-
(2006)
Res Microbiol
, vol.157
, pp. 487-495
-
-
Montes, M.1
Farto, R.2
Perez, M.J.3
Armada, S.P.4
Nieto, T.P.5
-
27
-
-
85047687623
-
Host-symbiont recognition in the environmentally transmitted sepiolid squid- Vibrio mutualism
-
Nishiguchi MK (2002) Host-symbiont recognition in the environmentally transmitted sepiolid squid- Vibrio mutualism. Microb Ecol 44:0-18
-
(2002)
Microb Ecol
, vol.44
, pp. 0-18
-
-
Nishiguchi, M.K.1
-
28
-
-
0038493553
-
Dominance of Vibrio fischeri in secreted mucus outside the light organ of Euprymna scolopes: The first site of symbiont specificity
-
Nyholm SV, McFall-Ngai MJ (2003) Dominance of Vibrio fischeri in secreted mucus outside the light organ of Euprymna scolopes: The first site of symbiont specificity. Appl Environ Microbiol 69:3932-3937
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3932-3937
-
-
Nyholm, S.V.1
McFall-Ngai, M.J.2
-
29
-
-
0035881132
-
Interactions between fish larvae and bacteria in marine aquaculture
-
Olafsen JA (2001) Interactions between fish larvae and bacteria in marine aquaculture. Aquaculture 200:223-247
-
(2001)
Aquaculture
, vol.200
, pp. 223-247
-
-
Olafsen, J.A.1
-
30
-
-
33846476745
-
Primary co-culture as a complementary approach to explore the diversity of bacterial associations in marine invertebrates: The example of Nautilus macromphalus (Cephalopoda: Nautiloidea)
-
in press
-
Pernice M, Pichon D, Domart-Coulon I, Favet J Boucher-Rodoni R (2006) Primary co-culture as a complementary approach to explore the diversity of bacterial associations in marine invertebrates: The example of Nautilus macromphalus (Cephalopoda: Nautiloidea). Marine Biology, in press
-
(2006)
Marine Biology
-
-
Pernice, M.1
Pichon, D.2
Domart-Coulon, I.3
Favet, J.4
Boucher-Rodoni, R.5
-
31
-
-
33751536386
-
Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes
-
Pernthaler J, Glöckner FO, Schönhuber W, Amann R (2001) Fluorescence in situ hybridization (FISH) with rRNA-targeted oligonucleotide probes. Methods Microbiol 30:207-226
-
(2001)
Methods Microbiol
, vol.30
, pp. 207-226
-
-
Pernthaler, J.1
Glöckner, F.O.2
Schönhuber, W.3
Amann, R.4
-
32
-
-
0036276618
-
Fluorescence in situ hybridization and catalysed reporter deposition for the identification of marine bacteria
-
Pernthaler A, Pernthaler J, Amann R (2002) Fluorescence in situ hybridization and catalysed reporter deposition for the identification of marine bacteria. Appl Environ Microbiol 68:3094-3101
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
33
-
-
33846477686
-
Phylogenetic diversity of epibiotic bacteria in the accessory nidamental glands of squids (Cephalopoda: Loliginidae and Idiosepiidae)
-
Pichon D, Gaia V, Norman MD, Boucher-Rodoni R (2005) Phylogenetic diversity of epibiotic bacteria in the accessory nidamental glands of squids (Cephalopoda: Loliginidae and Idiosepiidae). Mar Biol 147(6):1323-1332
-
(2005)
Mar Biol
, vol.147
, Issue.6
, pp. 1323-1332
-
-
Pichon, D.1
Gaia, V.2
Norman, M.D.3
Boucher-Rodoni, R.4
-
34
-
-
0343354331
-
Organsi luminosi, organi simbiotici e ghiandola nidamentale accessoria nei cefalopodi
-
Pierantoni U (1917) Organsi luminosi, organi simbiotici e ghiandola nidamentale accessoria nei cefalopodi. Bull della Soc Nat Napoli 30:30-36
-
(1917)
Bull Della Soc Nat Napoli
, vol.30
, pp. 30-36
-
-
Pierantoni, U.1
-
35
-
-
13444304088
-
Interaction of Helicobacter pylori with host cells: Function of secreted and translocated molecules
-
Rieder G, Fischer W, Haas R (2005) Interaction of Helicobacter pylori with host cells: Function of secreted and translocated molecules. Curr Opin Microbiol 8:67-73
-
(2005)
Curr Opin Microbiol
, vol.8
, pp. 67-73
-
-
Rieder, G.1
Fischer, W.2
Haas, R.3
-
37
-
-
0024711247
-
Antibacterial activity of Lactobacillus sake isolated from meat
-
Schilinger U, Lücke F (1989) Antibacterial activity of Lactobacillus sake isolated from meat. Appl Environ Microbiol 55:1901-1907
-
(1989)
Appl Environ Microbiol
, vol.55
, pp. 1901-1907
-
-
Schilinger, U.1
Lücke, F.2
-
38
-
-
0003157332
-
Cytomorphology and function of pericardial appendages of Nautilus (Cephalopoda, Tetrabranchiata)
-
Schipp R, Martin AW, Liebermann H, Magnier Y (1985) Cytomorphology and function of pericardial appendages of Nautilus (Cephalopoda, Tetrabranchiata). Zoomorphology 105:16-29
-
(1985)
Zoomorphology
, vol.105
, pp. 16-29
-
-
Schipp, R.1
Martin, A.W.2
Liebermann, H.3
Magnier, Y.4
-
39
-
-
33846480938
-
Symbiotic bacteria in the coelom of Nautilus (Cephalopoda, Tetrabranchiata)
-
Schipp R, Chung YS, Arnold JM (1990) Symbiotic bacteria in the coelom of Nautilus (Cephalopoda, Tetrabranchiata). Cell Tissue Res 219:585-604
-
(1990)
Cell Tissue Res
, vol.219
, pp. 585-604
-
-
Schipp, R.1
Chung, Y.S.2
Arnold, J.M.3
-
40
-
-
0026231662
-
A simple method for diagnosing M. tuberculosis infection in clinical samples using PCR
-
Sritharan V, Barker RH (1991) A simple method for diagnosing M. tuberculosis infection in clinical samples using PCR. Mol Cell Probes 5:385-95
-
(1991)
Mol Cell Probes
, vol.5
, pp. 385-395
-
-
Sritharan, V.1
Barker, R.H.2
-
41
-
-
0028028182
-
Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
Stackebrandt E, Goebel BM (1994) Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44:846-849
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
42
-
-
0027968068
-
ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ (1994) ClustalW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
|