A comprehensive literature review of haplotyping software and methods for use with unrelated individuals
15814067
Salem R Wessel J Schork N A comprehensive literature review of haplotyping software and methods for use with unrelated individuals Human Genomics 2005, 2:39-66 15814067
A Survey of Computational Methods for Determining Haplotypes
Halldórsson B Bafna V Edwards N Lippert R Yooseph S Istrail S A Survey of Computational Methods for Determining Haplotypes Computational Methods for SNPs and Haplotype Inference, Volume 2983 of Lecture Notes in Computer Science 2004:26-47
A tutorial on hidden Markov models and selected applications in speech recognition
10.1109/5.18626
Rabiner L A tutorial on hidden Markov models and selected applications in speech recognition Proceedings of the IEEE 1989, 77(2):257-286 10.1109/5.18626
A hidden Markov technique for haplotype reconstruction
Springer Casadio R, Myers G
Rastas P Koivisto M Mannila H Ukkonen E A hidden Markov technique for haplotype reconstruction WABI, Volume 3692 of Lecture Notes in Computer Science Springer Casadio R, Myers G 2005:140-151
A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
10.1086/502802 16532393 1424677
Scheet P Stephens M A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase Am J Hum Genet 2006, 78:629-644 10.1086/ 502802 16532393 1424677
A Markov chain approach to reconstruction of long haplotypes
World Scientific Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 14992496
Eronen L Geerts F Toivonen H A Markov chain approach to reconstruction of long haplotypes Pacific Symposium on Biocomputing World Scientific Altman RB, Dunker AK, Hunter L, Jung TA, Klein TE 2004:104-115 14992496
High-resolution haplotype structure in the human genome
10.1038/ng1001-229 11586305
Daly M Rioux J Schaffner S Hudson T Lander E High-resolution haplotype structure in the human genome Nature Genetics 2001, 29:229-232 10.1038/ ng1001-229 11586305
AAAI/MIT Press Fayyad U, Piatetsky-Shapiro G, Smyth P, Uthurusamy R
Agrawal R Mannila H Srikant R Toivonen H Verkamo A Fast discovery of association rules Advances in Knowledge Discovery and Data Mining AAAI/ MIT Press Fayyad U, Piatetsky-Shapiro G, Smyth P, Uthurusamy R 1996:307-328
Landwehr N Mielikäinen T Eronen L Toivonen H Mannila H SpaMM - a haplotype reconstruction method http://www.informatik.uni-freiburg.de/ ∼landwehr/haplotyping.html
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
10.1086/428594 15700229 1196397
Stephens M Scheet P Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation Am J Hum Genet 2005, 76:449-462 10.1086/428594 15700229 1196397
A block-free hidden Markov model for genotypes and its applications to disease association
10.1089/cmb.2005.12.1243 16379532
Kimmel G Shamir R A block-free hidden Markov model for genotypes and its applications to disease association Journal of Computational Biology 2005, 12(10):1243-1259 10.1089/cmb.2005.12.1243 16379532
HaploRec: Efficient and accurate large-scale reconstruction of haplotypes
1766938 17187677 10.1186/1471-2105-7-542
Eronen L Geerts F Toivonen H HaploRec: Efficient and accurate large-scale reconstruction of haplotypes BMC Bioinformatics 2006, 7:542 1766938 17187677 10.1186/1471-2105-7-542
Generating samples under a wright-fisher neutral model of genetic variation
10.1093/bioinformatics/18.2.337 11847089
Hudson R Generating samples under a wright-fisher neutral model of genetic variation Bioinformatics 2002, 18:337-338 10.1093/bioinformatics/ 18.2.337 11847089
Genome-wide association studies: Theoretical and practical concerns
10.1038/nrg1522 15716907
Wang W Barratt B Clayton D Todd J Genome-wide association studies: theoretical and practical concerns Nature Reviews Genetics 2005, 6:109-118 10.1038/nrg1522 15716907
Molecular genetics of the finnish disease heritage
10.1093/hmg/8.10.1913 10469845
Peltonen L Jalanko A Varilo T Molecular genetics of the finnish disease heritage Human Molecular Genetics 1999, 8:1913-1923 10.1093/hmg/ 8.10.1913 10469845