Does the 43 bp sequence from an 800 000 year old Cretan dwarf elephantid really rewrite the textbook on mammoths?

Biology Letters

Volumn 3, Issue 1, 2007, Pages 57-60

  Orlando, Ludovic ^a,b,c   Pagés, Marie ^a,b,c,d   Calvignac, Sébastien ^a,b,c   Hughes, Sandrine ^a,b,c   Hänni, Catherine ^a,b,c  

^a IFR 128   (France)

^b UNIVERSITÉ LYON 1   (France)

^c UNIVERSITÉ DE LYON   (France)

^d INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

Ancient DNA; Molecular phylogeny; Pigmy elephants; Whole genome amplification

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

ANATOMY; EXTINCTION; FOSSIL RECORD; GENOME; HOLOCENE; MAMMOTH; MEDITERRANEAN ENVIRONMENT; MITOCHONDRIAL DNA; PHYLOGENY; PLEISTOCENE; RECONSTRUCTION; TAXONOMY;

ARTICLE; DNA DETERMINATION; DNA SEQUENCE; ELEPHANT; ELEPHAS CRETICUS; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; HOLOCENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PLEISTOCENE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ANIMAL; BONE; CHEMISTRY; FOSSIL; GENETICS; METHODOLOGY; MOLECULAR GENETICS; NOTE; PHYLOGENY; SOUTHERN EUROPE;

ELEPHANTIDAE; ELEPHAS; ELEPHAS MAXIMUS; MAMMUTHUS PRIMIGENIUS;

ANIMALS; BASE SEQUENCE; BONE AND BONES; DNA PRIMERS; DNA, MITOCHONDRIAL; ELEPHANTS; FOSSILS; MEDITERRANEAN ISLANDS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA;

EID: 34249845227     PISSN: 17449561     EISSN: 1744957X     Source Type: Journal    
DOI: 10.1098/rsbl.2006.0536     Document Type: Article

References (22)

1. Calvignac, S., Hughes, S., Tougard, C., Michaux, J., Thévenot, M., Hamdine, W. & Hänni, C. Submitted. Ancient DNA evidences the loss of a highly divergent brown bear clade during historical times. Mol. Ecol.
2. Capelli, C., Macphee, R., Roca, A., Brisighelli, F., Georgiadis, N., O'Brien, S. J. & Greenwood, A. D. 2006 A nuclear DNA phylogeny of the woolly mammoth (Mammuthus primigenius). Mol. Phylogenet. Evol. 40, 620-627. (Pubitemid 44038588)
3. Gilbert, M. T., Hansen, A., Willerslev, E., Rudbeck, L., Barnes, I., Lynnerup, N. & Cooper, A. 2003 Characterization of genetic miscoding lesions caused by postmortem damage. Am. J. Hum. Genet. 72, 48-61. (doi:10.1086/345379) (Pubitemid 36056841)
4. Gilbert, M. T., Bandelt, H., Hofreiter, M. & Barnes, I. 2005 Assessing ancient DNA studies. Trends Ecol. Evol. 20, 541-544. (doi:10.1016/j.tree.2005.07.005) (Pubitemid 41323710)
5. Greenwood, A. D., Capelli, C., Possnert, G. & Pääbo, S. 1999 Nuclear DNA sequences from late Pleistocene megafauna. Mol. Biol. Evol. 16, 1466-1473. (Pubitemid 29510889)
6. Hofreiter, M., Jaenicke, V., Serre, D., Haeseler Av, A. & Pääbo, S. 2001 DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Res. 29, 4793-4799. (doi:10.1093/nar/29.23.4793) (Pubitemid 33133550)
7. Hoss, M., Jaruga, P., Zastawny, T. H., Dizdaroglu, M. & Pääbo, S. 1996 DNA damage and DNA sequence retrieval from ancient tissues. Nucleic Acids Res. 24, 1304-1307. (doi:10.1093/nar/24.7.1304) (Pubitemid 26102681)
8. Krause, J. et al. 2006 Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature 439, 724-727.
9. Lalueza-Fox, C., Castresana, J., Sampietro, L., Marques-Bonet, T., Alcover, J. A. & Bertranpetit, J. 2005 Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus an extinct endemic Balearic mammal. BMC Evol. Biol. 5, 70. (Pubitemid 43060707)
10. Lindahl, T. 1993 Recovery of antediluvian DNA. Nature 365, 700. (doi:10.1038/365700a0) (Pubitemid 23339873)
11. Mol, D., DeVos, J., van den Bergh, G. D. & Sondaar, P. Y. 1996 The taxonomy and ancestry of the fossil elephants of Crete: faunal turnover and a comparison with proboscidean faunas of Indonesian islands. In Pleistocene and Holocene fauna of Crete and its first settlers (ed. D. S. Reese), pp. 81-98. Madison, WI: Prehistory Press.
12. Noonan, J. P. et al. 2005 Genomic sequencing of Pleistocene cave bears. Science 309, 597-599.
13. Poinar, H., Kuch, M., McDonald, G., Martin, P. & Pääbo, S. 2003 Nuclear gene sequences from a late Pleistocene sloth coprolite. Curr. Biol. 13, 1150-1152. (doi:10.1016/S0960-9822(03)00450-0) (Pubitemid 36815265)
14. Poinar, H. et al. 2006 Metagenomics to paleogenomics: large-scale sequencing of mammoth DNA. Science 311, 392-394.
15. Poulakakis, N., Theodorou, G. E., Zouros, E. & Mylonas, M. 2002 Molecular phylogeny of the extinct Pleistocene dwarf elephant Palaeoloxodon antiquus falconeri from Tilos Island, Dodekanisa, Greece. J. Mol. Evol. 55, 364-374.
16. Poulakakis, N., Parmakelis, A., Lymberakis, P., Mylonas, M., Zouros, E., Reese, D., Glaberman, S. & Caccone, A. 2006 Ancient DNA forces reconsideration of evolutionary history of Mediterranean pygmy elephantids. Biol. Lett. 2, 451-454. (doi:10.1098/rsbl.2006.0467) (Pubitemid 44387386)
17. Rogaev, E., Moliaka, Y., Malyarchuk, B., Kondrashov, F., Derenko, M., Chumakov, I. & Grigorenko, A. 2006 Complete mitochondrial genome and phylogeny of Pleistocene Mammoth Mammuthus primigenius. PLoS Biol. 4, e73.
18. Römpler, H., Rohland, N., Lalueza-Fox, C., Willerslev, E., Kuznetsova, T., Rabeder, G., Bertranpetit, J., Schoneberg, T. & Hofreiter, M. 2006 Nuclear gene indicates coat-color polymorphism in mammoths. Science 313, 62. (doi:10.1126/science.1128994) (Pubitemid 44051250)
19. Valdiosera, C., García, N., Dalén, L., Smith, C., Kahlke, R.-D., Lidén, K., Angerbjörn, A., Arsuaga, J.-L. & Götherström, A. 2006 Typing single polymorphic nucleotides in mitochondrial DNA as a way to access Middle Pleistocene DNA. Biol. Lett. 2, 601-603.
20. Waits, L., Talbot, S. L., Ward, R. & Shields, G. F. 1998 Mitochondrial DNA Phylogeography of the North American brown bear and implications for conservation. Conserv. Biol. 12, 408-417. (doi:10.1046/j.1523- 1739.1998.96351.x) (Pubitemid 28202799)
21. Willerslev, E. et al. 2003 Diverse plant and animal genetic records from Holocene and Pleistocene sediments. Science 300, 791-795.
22. Willerslev, E., Hansen, A. & Poinar, H. 2004 Isolation of nucleic acids and cultures from fossil ice and permafrost. Trends Ecol. Evol. 19, 141-147. (doi:10.1016/j.tree.2003.11.010) (Pubitemid 38225266)