Exploring cellular memory molecules marking competent and active transcriptions

BMC Molecular Biology

Volumn 8, Issue , 2007, Pages

  Xin, Li ^a   Zhou, Guo Ling ^a   Song, Wei ^a   Wu, Xue Song ^a   Wei, Gong Hong ^a   Hao, De Long ^a   Lv, Xiang ^a   Liu, De Pei ^a   Liang, Chih Chuan ^a  

^a INSTITUTE OF BASIC MEDICAL SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ERYTHROID SPECIFIC DNA BINDING FACTOR; HISTONE; TRANSCRIPTION FACTOR GATA 1; TRANSCRIPTION FACTOR IID; TRANSCRIPTION FACTOR NF E2 P45 SUBUNIT; GATA1 PROTEIN, MOUSE; GLOBIN; UNCLASSIFIED DRUG;

ACETYLATION; ANIMAL CELL; ARTICLE; CELL CYCLE; CELL CYCLE M PHASE; CELL DIFFERENTIATION; CELL DIVISION; CELL FUNCTION; CELL GROWTH; CHROMATIN CONDENSATION; ERYTHROLEUKEMIA CELL; EUKARYOTE; GENE EXPRESSION; GENE LOCUS; GENETIC ANALYSIS; GENETIC REGULATION; GENETIC TRANSCRIPTION; HISTONE CODE; MARKER GENE; MEMORY CELL; MITOGENESIS; MOUSE; NONHUMAN; PROMOTER REGION; PROTEIN ANALYSIS; ANIMAL; CHROMOSOME; GENETIC EPIGENESIS; GENETICS; METABOLISM; METHYLATION; MITOSIS; TRANSACTIVATION; TUMOR CELL LINE;

EUKARYOTA; MURINAE;

ACETYLATION; ANIMALS; CELL LINE, TUMOR; CHROMOSOMES, MAMMALIAN; EPIGENESIS, GENETIC; GATA1 TRANSCRIPTION FACTOR; GLOBINS; HISTONES; METHYLATION; MICE; MITOSIS; NF-E2 TRANSCRIPTION FACTOR, P45 SUBUNIT; PROMOTER REGIONS (GENETICS); TRANS-ACTIVATION (GENETICS);

EID: 34249787874     PISSN: None     EISSN: 14712199     Source Type: Journal    
DOI: 10.1186/1471-2199-8-31     Document Type: Article

References (28)

1. Gottesfeld JM Forbes DJ Mitotic repression of the transcriptional machinery Trends Biochem Sci 1997 22 6 197-202 10.1016/ S0968-0004(97)01045-1 9204705
2. Kerem BS Goitein R Diamond G Cedar H Marcus M Mapping of DNAase I sensitive regions on mitotic chromosomes Cell 1984 38 2 493-499 10.1016/ 0092-8674(84)90504-X 6235920
3. Michelotti EF Sanford S Levens D Marking of active genes on mitotic chromosomes Nature 1997 388 6645 895-899 10.1038/42282 9278053
4. John S Workman JL Bookmarking genes for activation in condensed mitotic chromosomes Bioessays 1998 20 4 275-279 10.1002/ (SICI)1521-1878(199804)20:4<275::AID-BIES1>3.0.CO;2-P 9619097
5. Chen D Hinkley CS Henry RW Huang S TBP dynamics in living human cells: constitutive association of TBP with mitotic chromosomes Mol Biol Cell 2002 13 1 276-284 65088 11809839 10.1091/mbc.01-10-0523
6. Christova R Oelgeschlager T Association of human TFIID-promoter complexes with silenced mitotic chromatin in vivo Nat Cell Biol 2002 4 1 79-82 10.1038/ncb733 11744923
7. Nobrega MA Ovcharenko I Afzal V Rubin EM Scanning human gene deserts for long-range enhancers Science 2003 302 5644 413 10.1126/science.1088328 14563999
8. Spitz F Gonzalez F Duboule D A global control region defines a chromosomal regulatory landscape containing the HoxD cluster Cell 2003 113 3 405-417 10.1016/S0092-8674(03)00310-6 12732147
9. Palstra RJ Tolhuis B Splinter E Nijmeijer R Grosveld F de Laat W The beta-globin nuclear compartment in development and erythroid differentiation Nat Genet 2003 35 2 190-194 10.1038/ng1244 14517543
10. Groudine M Weintraub H Propagation of globin DNAase I-hypersensitive sites in absence of factors required for induction: A possible mechanism for determination Cell 1982 30 1 131-139 10.1016/0092-8674(82)90019-8 6290075
11. Jenuwein T Allis CD Translating the histone code Science 2001 293 5532 1074-1080 10.1126/science.1063127 11498575
12. Turner BM Cellular memory and the histone code Cell 2002 111 3 285-291 10.1016/S0092-8674(02)01080-2 12419240
13. Kouskouti A Talianidis I Histone modifications defining active genes persist after transcriptional and mitotic inactivation Embo J 2005 24 2 347-357 545808 15616580 10.1038/sj.emboj.7600516
14. Sawado T Igarashi K Groudine M Activation of beta-major globin gene transcription is associated with recruitment of NF-E2 to the beta-globin LCR and gene promoter Proc Natl Acad Sci U S A 2001 98 18 10226-10231 56943 11517325 10.1073/pnas.181344198
15. Anguita E Hughes J Heyworth C Blobel GA Wood WG Higgs DR Globin gene activation during haemopoiesis is driven by protein complexes nucleated by GATA-1 and GATA-2 Embo J 2004 23 14 2841-2852 514941 15215894 10.1038/ sj.emboj.7600274
16. Kruhlak MJ Hendzel MJ Fischle W Bertos NR Hameed S Yang XJ Verdin E Bazett-Jones DP Regulation of global acetylation in mitosis through loss of histone acetyltransferases and deacetylases from chromatin J Biol Chem 2001 276 41 38307-38319 11479283
17. Boyes J Byfield P Nakatani Y Ogryzko V Regulation of activity of the transcription factor GATA-1 by acetylation Nature 1998 396 6711 594-598 10.1038/25166 9859997
18. Collavin L Gostissa M Avolio F Secco P Ronchi A Santoro C Del Sal G Modification of the erythroid transcription factor GATA-1 by SUMO-1 Proc Natl Acad Sci U S A 2004 101 24 8870-8875 428439 15173587 10.1073/ pnas.0308605101
19. Partington GA Patient RK Phosphorylation of GATA-1 increases its DNA-binding affinity and is correlated with induction of human K562 erythroleukaemia cells Nucleic Acids Res 1999 27 4 1168-1175 148299 9927752 10.1093/nar/27.4.1168
20. Francastel C Magis W Groudine M Nuclear relocation of a transactivator subunit precedes target gene activation Proc Natl Acad Sci U S A 2001 98 21 12120-12125 59778 11593025 10.1073/pnas.211444898
21. Schubeler D MacAlpine DM Scalzo D Wirbelauer C Kooperberg C van Leeuwen F Gottschling DE O'Neill LP Turner BM Delrow J Bell SP Groudine M The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote Genes Dev 2004 18 11 1263-1271 420352 15175259 10.1101/gad.1198204
22. Ahmad K Henikoff S The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly Mol Cell 2002 9 6 1191-1200 10.1016/S1097-2765(02)00542-7 12086617
23. McKittrick E Gafken PR Ahmad K Henikoff S Histone H3.3 is enriched in covalent modifications associated with active chromatin Proc Natl Acad Sci U S A 2004 101 6 1525-1530 341768 14732680 10.1073/pnas.0308092100
24. Schwartz BE Ahmad K Transcriptional activation triggers deposition and removal of the histone variant H3.3 Genes Dev 2005 19 7 804-814 1074318 15774717 10.1101/gad.1259805
25. Chow CM Georgiou A Szutorisz H Maia e Silva A Pombo A Barahona I Dargelos E Canzonetta C Dillon N Variant histone H3.3 marks promoters of transcriptionally active genes during mammalian cell division EMBO Rep 2005 6 4 354-360 1299280 15776021 10.1038/sj.embor.7400366
26. Trimborn T Gribnau J Grosveld F Fraser P Mechanisms of developmental control of transcription in the murine alpha- and beta-globin loci Genes Dev 1999 13 112-124 316369 9887104
27. Wijgerde M Grosveld F Fraser P Transcription complex stability and chromatin dynamics in vivo Nature 1995 377 209-213 10.1038/377209a0 7675106
28. de Krom M van de Corput M von Lindern M Grosveld F Strouboulis J Stochastic patterns in globin gene expression are established prior to transcriptional activation and are clonally inherited Mol Cell 2002 9 1319-1326 10.1016/S1097-2765(02)00558-0 12086628