Multi-program approach for simulating recorded extracellular signals generated by neurons coupled to microelectrode arrays

Neurocomputing

Volumn 70, Issue 13-15, 2007, Pages 2467-2476

  Massobrio, Paolo ^a   Massobrio, Giuseppe ^a   Martinoia, Sergio ^a  

^a UNIVERSITY OF GENOA   (Italy)

Author keywords

Adhesion conditions; Extracellular signal recording; Microelectrode model; Neuron model; Neuron microelectrode junction simulation

Indexed keywords

COMPUTER SIMULATION; MICROELECTRODES; MULTIPROGRAMMING; NEURONS;

EXTRACELLULAR SIGNALS; NEURON-MICROELECTRODE JUNCTION SIMULATION;

DATA RECORDING;

ARTICLE; CELL ACTIVITY; CELL INTERACTION; CELL POPULATION; CONTROLLED STUDY; INTERMETHOD COMPARISON; MICROELECTRODE; NERVE CELL; NERVE CELL NETWORK; PRIORITY JOURNAL; PROCESS MODEL; SIGNAL TRANSDUCTION; SIMULATION; SYNAPSE;

EID: 34249746312     PISSN: 09252312     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neucom.2006.09.008     Document Type: Article

References (36)

1. Berdondini L., Wal P.D.v.d., Guenat O., Rooij N.F.d., Koudelka-Hep M., Seitz P., Kaufmann R., Metzler P., Blanc N., and Rohr S. High-density electrode array for imaging in vitro electrophysiological activity. Biosens. Bioelectron. 21 (2005) 167-174
2. Bove M., Martinoia S., Verreschi G., Giugliano M., and Grattarola M. Analysis of the signals generated by networks of neurons coupled to planar arrays of microtransducers in simulated experiments. Biosens. Bioelectron. 13 (1998) 601-612
3. Bove M., Massobrio G., Martinoia S., and Grattarola M. Realistic simulations of neurons by means of an to hoc modified version of SPICE. Biol. Cybern. 71 (1994) 137-145
4. Braun D., and Fromherz P. Fluorescence interferometry of neuronal cell adhesion on microstructured silicon. Phys. Rev. Lett. 81 (1998) 5241-5244
5. Bunow B., Segev I., and Fleshman J.W. Modeling the electrical behavior of anatomically complex neurons using a network analysis program: excitable membrane. Biol. Cybern. 53 (1985) 41-56
6. Chiappalone M., Vato A., Tedesco M.T., Marcoli M., Davide F.A., and Martinoia S. Networks of neurons coupled to microelectrode arrays: a neuronal sensory system for pharmacological applications. Biosens. Bioelectron. 18 (2003) 627-634
7. Destexhe A., Mainen Z., and Sejnowski T.J. An efficient method for computing synaptic conductances based on to kinetic model of receptor binding. Neural Comput. 6 (1994) 14-18
8. Fromherz P. Neuroelectronic interfacing: semiconductor chips with ion channels, nerve cells, and brain. In: Waser R. (Ed). Nanoelectronics and Information Technology (2003), Wiley-VCH, Berlin 781-810
9. Fromherz P., Offenhausser A., Vetter T., and Weiss J.A. Neuron-silicon junction: a Retzius cell of the leech on an insulated-gate field-effect transistor. Science 252 (1991) 1290-1293
10. Grattarola M., and Martinoia S. Modeling the neuron-microtransducer junction: from extracellular to patch recording. IEEE Trans. Biomed. Eng. 40 (1993) 35-41
11. Grattarola M., Martinoia S., Massobrio G., Cambiaso A., Rosichini R., and Tetti M. Computer simulations of the responses of passive and active integrated microbiosensors to cell activity. Sens. Actuat. B 4 (1991) 261-265
12. Gross G.W., Azzazy H.M.E., Wu M.C., and Rhodes B.K. The use of neuronal networks on multielectrode arrays as biosensors. Biosens. Bioelectron. 10 (1995) 553-567
13. Gross G.W., and Kowalski J.M. Experimental and theoretical analyses of random networks dynamics. In: Antognetti P., and Milutinovic V. (Eds). Neural Networks, Concepts, Application and Implementation vol. 4 (1991), Prentice Hall, Englewood Cliffs NJ 47-110
14. Hines M.L., and Carnevale N.T. NEURON: a tool for neuroscientists. Neuroscientist 7 (2001) 123-135
15. Hodgkin A.L., and Huxley A.F. A quantitative description of membrane current and its applications to conduction and excitation in nerve. J. Physiol. 117 (1952) 500-544
16. http://neuron.duke.edu/, "NEURON documentation."
17. http://www.mathworks.com, MATLAB documentation.
18. Jimbo Y., Tateno Y., and Robinson H.P.C. Simultaneous induction of pathway-specific potentiation and depression in networks of cortical neurons. Biophys. J. 76 (1999) 670-678
19. London M., Meunier C., and Segev I. Signal transfer in passive dendrites with nonuniform membrane conductance. J. Neurosci. 19 (1999) 8219-8233
20. Maeda E., Robinson H.P.C., and Kawana A. The mechanism of generation and propagation of synchronized bursting in developing networks of cortical neurons. J. Neurosci. 15 (1995) 6834-6845
21. Maher M.P., Pine J., Wright J., and Tai Y.-C. The neurochip: a new multielectrode device for stimulating and recording from cultured neurons. J. Neurosci. Methods 87 (1999) 45-56
22. Martinoia S., Bonzano L., Chiappalone M., Tedesco M., Marcoli M., and Maura G. In-vitro cortical neuronal networks as a new high-sensitive system for biosensing application. Biosens. Bioelectron. 20 (2005) 2071-2078
23. Martinoia S., and Massobrio P. ISFET-neuron junction: circuit models and extracellular signal simulations. Biosens. Bioelectron. 19 (2004) 1487-1496
24. Martinoia S., Massobrio P., Bove M., and Massobrio G. Cultured neurons coupled to microelectrode arrays: circuit models, simulations and experimental data. IEEE Trans. Biomed. Eng. 51 (2004) 859-864
25. Massobrio G., and Antognetti P. Semiconductor device modeling with SPICE. second ed (1993), McGraw-Hill
26. I. Meta-Software, HSPICE User's Manual, Campbell, 1992.
27. Newman J. Resistance for flow of current to a disk. J. Electrochem. Soc. 113 (1966) 501-502
28. Pine J. Recording action potentials from cultured neurons with extracellular microcircuit electrodes. J. Neurosci. Methods 2 (1980) 19-31
29. Robinson D.A. The electrical properties of metal microelectrodes. Proc. IEEE 56 (1968) 1065-1071
30. Rutten W., Mouveroux J.M., Buitenweg J., Heida C., Ruardij T., Marani E., and Lakke E. Neuro-electronic interfacing with cultured multi electrode arrays toward a cultured probe. Proc. IEEE 89 (2001) 1013-1029
31. Segev I., Fleshman J.W., Miller J.P., and Bunow B. Compartmental models of complex neurons. In: Koch C., and Segev I. (Eds). Methods in Neuronal Modeling. From Synapses to Network (1989), Bradford Book, MIT Press, Cambridge, MA 63-96
32. Segev R., Shapira Y., Benveniste M., and Ben-Jacob E. Observations and modeling of syncronized bursting in two-dimensional neural networks. Phys. Rev. E 64 (2001) 119201-119209
33. Suzuki I., Sugio Y., Moriguchi H., Jimbo Y., and Yasuda K. Stepwise pattern modification of neuronal network in photo-termally-etched agarose architecture on multi-electrode array chip for individual-cell-based electrophysiological measuraments. Lab. Chip 5 (2005) 241-247
34. Van Ooyen A., Duijnhouver J., Remme Michiel W.H., and Van Pelt J. The effect of dendritic topology on firing patterns in model neurons. Network: Comput. Neural Syst. 13 (2002) 311-325
35. Vassanelli S., and Fromherz P. Transistor probes local potassium conductances in the adhesion region of cultured rat hippocampal neurons. J. Neurosci. 19 (1999) 6767-6773
36. Yates D.E., Levine S., and Healy T.W. Site-binding model of the electrical double layer at the oxide/water interface. J. Chem. Soc. Faraday Trans. 70 (1974) 1807-1818