메뉴 건너뛰기




Volumn 23, Issue 8, 2007, Pages 917-925

HomologMiner: Looking for homologous genomic groups in whole genomes

Author keywords

[No Author keywords available]

Indexed keywords

GENE PRODUCT; GENOMIC DNA; OLFACTORY RECEPTOR PROTEIN; UNCLASSIFIED DRUG; ZINC FINGER PROTEIN;

EID: 34249664955     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btm048     Document Type: Article
Times cited : (4)

References (21)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • Altschul,S. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1
  • 2
    • 2442680252 scopus 로고    scopus 로고
    • Analysis of segmental duplications and genome assembly in the mouse
    • Bailey,J.A. et al. (2004) Analysis of segmental duplications and genome assembly in the mouse. Genome Res., 14, 789-801.
    • (2004) Genome Res , vol.14 , pp. 789-801
    • Bailey, J.A.1
  • 3
    • 0036673472 scopus 로고    scopus 로고
    • Automated de novo identification of repeat sequence families in sequenced genomes
    • Bao,Z. and Eddy,S.R. (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res., 12, 1269-1276.
    • (2002) Genome Res , vol.12 , pp. 1269-1276
    • Bao, Z.1    Eddy, S.R.2
  • 4
    • 14044256286 scopus 로고    scopus 로고
    • Into the heat of darkness: Large-scale clustering of human non-coding DNA
    • Bejerano,G. et al. (2004) Into the heat of darkness: Large-scale clustering of human non-coding DNA. Bioinformatics, 20, i40-i48.
    • (2004) Bioinformatics , vol.20
    • Bejerano, G.1
  • 5
    • 1542748076 scopus 로고    scopus 로고
    • Aligning multiple genomic sequences with the threaded blockset aligner
    • Blanchette,M. et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res., 14, 708-715.
    • (2004) Genome Res , vol.14 , pp. 708-715
    • Blanchette, M.1
  • 6
    • 33745767924 scopus 로고    scopus 로고
    • Clustering near-identical sequences for fast homology search
    • Cameron,M. et al. (2006) Clustering near-identical sequences for fast homology search. LNBI, 3909, 175-189.
    • (2006) LNBI , vol.3909 , pp. 175-189
    • Cameron, M.1
  • 7
    • 15844389857 scopus 로고    scopus 로고
    • RAP: A new computer program for de novo identification of repeated sequences in whole genomes
    • Campagna,D. et al. (2005) RAP: A new computer program for de novo identification of repeated sequences in whole genomes. Bioinformatics 21, 582-588.
    • (2005) Bioinformatics , vol.21 , pp. 582-588
    • Campagna, D.1
  • 8
    • 24644505259 scopus 로고    scopus 로고
    • Fewer genes, more noncoding RNA
    • Claverie,J.M. (2005) Fewer genes, more noncoding RNA. Science, 309, 1529-1530.
    • (2005) Science , vol.309 , pp. 1529-1530
    • Claverie, J.M.1
  • 10
    • 84860513986 scopus 로고    scopus 로고
    • PILER: Identification and classification of genomic repeats
    • Edgar,R. and Myers,E.W. (2005) PILER: Identification and classification of genomic repeats. Bioinformatics, 21, i152-i158.
    • (2005) Bioinformatics , vol.21
    • Edgar, R.1    Myers, E.W.2
  • 11
    • 0036529479 scopus 로고    scopus 로고
    • An efficient algorithm for large-scale detection of protein families
    • Enright,A.J. et al. (2002) An efficient algorithm for large-scale detection of protein families. Nucliec Acids Res., 30, 1575-1584.
    • (2002) Nucliec Acids Res , vol.30 , pp. 1575-1584
    • Enright, A.J.1
  • 12
    • 1042292571 scopus 로고    scopus 로고
    • Graph-based clustering for finding distant relationships in a large set of protein sequences
    • Kawaji,H. et al. (2004) Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinformatics, 20, 243-252.
    • (2004) Bioinformatics , vol.20 , pp. 243-252
    • Kawaji, H.1
  • 13
    • 0036079158 scopus 로고    scopus 로고
    • The human genome browser at UCSC
    • Kent,W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
    • (2002) Genome Res , vol.12 , pp. 996-1006
    • Kent, W.J.1
  • 14
    • 33947406692 scopus 로고    scopus 로고
    • BAG: A graph theoretic sequence clustering algorithm
    • Kim,S. and Lee,J. (2006) BAG: A graph theoretic sequence clustering algorithm. Int. J. Data Mining and Bioinformatics, 1, 178-200.
    • (2006) Int. J. Data Mining and Bioinformatics , vol.1 , pp. 178-200
    • Kim, S.1    Lee, J.2
  • 15
    • 14644389485 scopus 로고    scopus 로고
    • The olfactory receptor universe - from whole genome analysis to structure and evolution
    • Olender,T. et al. (2004) The olfactory receptor universe - from whole genome analysis to structure and evolution, Genet. Mol. Res. 3, 545-553.
    • (2004) Genet. Mol. Res , vol.3 , pp. 545-553
    • Olender, T.1
  • 16
    • 0033940118 scopus 로고    scopus 로고
    • RSDB: Representative protein sequence databases have high information content
    • Park,J. et al. (2000) RSDB: Representative protein sequence databases have high information content. Bioinformatics, 16, 458-464.
    • (2000) Bioinformatics , vol.16 , pp. 458-464
    • Park, J.1
  • 17
    • 4644275238 scopus 로고    scopus 로고
    • Do novo repeat classification and fragment assembly
    • Pevzner,P.A. et al. (2004) Do novo repeat classification and fragment assembly. Genome Res., 14, 1786-1796.
    • (2004) Genome Res , vol.14 , pp. 1786-1796
    • Pevzner, P.A.1
  • 18
    • 29144455282 scopus 로고    scopus 로고
    • De novo identification of repeat families in large genomes
    • Price,A.L. et al. (2005) De novo identification of repeat families in large genomes. Bioinformatics, 21, i351-i358.
    • (2005) Bioinformatics , vol.21
    • Price, A.L.1
  • 19
    • 0037267806 scopus 로고    scopus 로고
    • Human-mouse alignments with BLASTZ
    • Schwartz,S. et al. (2004) Human-mouse alignments with BLASTZ. Genome Res., 13, 103-107.
    • (2004) Genome Res , vol.13 , pp. 103-107
    • Schwartz, S.1
  • 20
    • 34447330548 scopus 로고    scopus 로고
    • Smit,AFA et al. (1996-2004) RepeatMasker Open-3.0, http://www.repeatmasker.org.
    • Smit,AFA et al. (1996-2004) RepeatMasker Open-3.0, http://www.repeatmasker.org.
  • 21
    • 84887249319 scopus 로고
    • A simple min cut algorithm
    • Stoer,M. and Wagner,F. (1994) A simple min cut algorithm. LNCS, 855, 141-147.
    • (1994) LNCS , vol.855 , pp. 141-147
    • Stoer, M.1    Wagner, F.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.