-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S. et al. (1997) Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.1
-
2
-
-
2442680252
-
Analysis of segmental duplications and genome assembly in the mouse
-
Bailey,J.A. et al. (2004) Analysis of segmental duplications and genome assembly in the mouse. Genome Res., 14, 789-801.
-
(2004)
Genome Res
, vol.14
, pp. 789-801
-
-
Bailey, J.A.1
-
3
-
-
0036673472
-
Automated de novo identification of repeat sequence families in sequenced genomes
-
Bao,Z. and Eddy,S.R. (2002) Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res., 12, 1269-1276.
-
(2002)
Genome Res
, vol.12
, pp. 1269-1276
-
-
Bao, Z.1
Eddy, S.R.2
-
4
-
-
14044256286
-
Into the heat of darkness: Large-scale clustering of human non-coding DNA
-
Bejerano,G. et al. (2004) Into the heat of darkness: Large-scale clustering of human non-coding DNA. Bioinformatics, 20, i40-i48.
-
(2004)
Bioinformatics
, vol.20
-
-
Bejerano, G.1
-
5
-
-
1542748076
-
-
Aligning multiple genomic sequences with the threaded blockset aligner
-
Blanchette,M. et al. (2004) Aligning multiple genomic sequences with the threaded blockset aligner. Genome Res., 14, 708-715.
-
(2004)
Genome Res
, vol.14
, pp. 708-715
-
-
Blanchette, M.1
-
6
-
-
33745767924
-
Clustering near-identical sequences for fast homology search
-
Cameron,M. et al. (2006) Clustering near-identical sequences for fast homology search. LNBI, 3909, 175-189.
-
(2006)
LNBI
, vol.3909
, pp. 175-189
-
-
Cameron, M.1
-
7
-
-
15844389857
-
RAP: A new computer program for de novo identification of repeated sequences in whole genomes
-
Campagna,D. et al. (2005) RAP: A new computer program for de novo identification of repeated sequences in whole genomes. Bioinformatics 21, 582-588.
-
(2005)
Bioinformatics
, vol.21
, pp. 582-588
-
-
Campagna, D.1
-
8
-
-
24644505259
-
Fewer genes, more noncoding RNA
-
Claverie,J.M. (2005) Fewer genes, more noncoding RNA. Science, 309, 1529-1530.
-
(2005)
Science
, vol.309
, pp. 1529-1530
-
-
Claverie, J.M.1
-
10
-
-
84860513986
-
PILER: Identification and classification of genomic repeats
-
Edgar,R. and Myers,E.W. (2005) PILER: Identification and classification of genomic repeats. Bioinformatics, 21, i152-i158.
-
(2005)
Bioinformatics
, vol.21
-
-
Edgar, R.1
Myers, E.W.2
-
11
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright,A.J. et al. (2002) An efficient algorithm for large-scale detection of protein families. Nucliec Acids Res., 30, 1575-1584.
-
(2002)
Nucliec Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
-
12
-
-
1042292571
-
Graph-based clustering for finding distant relationships in a large set of protein sequences
-
Kawaji,H. et al. (2004) Graph-based clustering for finding distant relationships in a large set of protein sequences. Bioinformatics, 20, 243-252.
-
(2004)
Bioinformatics
, vol.20
, pp. 243-252
-
-
Kawaji, H.1
-
13
-
-
0036079158
-
The human genome browser at UCSC
-
Kent,W.J. et al. (2002) The human genome browser at UCSC. Genome Res., 12, 996-1006.
-
(2002)
Genome Res
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
14
-
-
33947406692
-
BAG: A graph theoretic sequence clustering algorithm
-
Kim,S. and Lee,J. (2006) BAG: A graph theoretic sequence clustering algorithm. Int. J. Data Mining and Bioinformatics, 1, 178-200.
-
(2006)
Int. J. Data Mining and Bioinformatics
, vol.1
, pp. 178-200
-
-
Kim, S.1
Lee, J.2
-
15
-
-
14644389485
-
The olfactory receptor universe - from whole genome analysis to structure and evolution
-
Olender,T. et al. (2004) The olfactory receptor universe - from whole genome analysis to structure and evolution, Genet. Mol. Res. 3, 545-553.
-
(2004)
Genet. Mol. Res
, vol.3
, pp. 545-553
-
-
Olender, T.1
-
16
-
-
0033940118
-
RSDB: Representative protein sequence databases have high information content
-
Park,J. et al. (2000) RSDB: Representative protein sequence databases have high information content. Bioinformatics, 16, 458-464.
-
(2000)
Bioinformatics
, vol.16
, pp. 458-464
-
-
Park, J.1
-
17
-
-
4644275238
-
Do novo repeat classification and fragment assembly
-
Pevzner,P.A. et al. (2004) Do novo repeat classification and fragment assembly. Genome Res., 14, 1786-1796.
-
(2004)
Genome Res
, vol.14
, pp. 1786-1796
-
-
Pevzner, P.A.1
-
18
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price,A.L. et al. (2005) De novo identification of repeat families in large genomes. Bioinformatics, 21, i351-i358.
-
(2005)
Bioinformatics
, vol.21
-
-
Price, A.L.1
-
19
-
-
0037267806
-
Human-mouse alignments with BLASTZ
-
Schwartz,S. et al. (2004) Human-mouse alignments with BLASTZ. Genome Res., 13, 103-107.
-
(2004)
Genome Res
, vol.13
, pp. 103-107
-
-
Schwartz, S.1
-
20
-
-
34447330548
-
-
Smit,AFA et al. (1996-2004) RepeatMasker Open-3.0, http://www.repeatmasker.org.
-
Smit,AFA et al. (1996-2004) RepeatMasker Open-3.0, http://www.repeatmasker.org.
-
-
-
-
21
-
-
84887249319
-
A simple min cut algorithm
-
Stoer,M. and Wagner,F. (1994) A simple min cut algorithm. LNCS, 855, 141-147.
-
(1994)
LNCS
, vol.855
, pp. 141-147
-
-
Stoer, M.1
Wagner, F.2
|