Rapid high-resolution karyotyping with precise identification of chromosome breakpoints

Genes Chromosomes and Cancer

Volumn 46, Issue 7, 2007, Pages 675-683

  Mao, Xueying ^a   James, Sharon Y ^a   Yàñez Muñoz, Rafael J ^a,b   Chaplin, Tracy ^a   Molloy, Gael ^a   Oliver, R Tim D ^a   Young, Bryan D ^a   Lu, Yong Jie ^a  

^a QUEEN MARY UNIVERSITY OF LONDON   (United Kingdom)

^b GUY S HOSPITAL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CANCER CELL; CANCER CELL CULTURE; CHROMOSOME BREAKAGE; CHROMOSOME DELETION; CHROMOSOME HIGH RESOLUTION BANDING ANALYSIS; CHROMOSOME REARRANGEMENT; CHROMOSOME TRANSLOCATION; CONTROLLED STUDY; EXON; FLUORESCENCE IN SITU HYBRIDIZATION; GENE EXPRESSION; GENE FUSION; GENE IDENTIFICATION; GENOME ANALYSIS; HUMAN; HUMAN CELL; KARYOTYPING; MALE; MICROARRAY ANALYSIS; PRIORITY JOURNAL; PROSTATE CANCER; SINGLE NUCLEOTIDE POLYMORPHISM;

CHROMOSOME FRAGILE SITES; HUMANS; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 34249067352     PISSN: 10452257     EISSN: 10982264     Source Type: Journal    
DOI: 10.1002/gcc.20452     Document Type: Article

References (22)

1. Clark J, Edwards S, Feber A, Flohr P, John M, Giddings I, Crossland S, Stratton MR, Wooster R, Campbell C, Cooper CS. 2003. Genome-wide screening for complete genetic loss in prostate cancer by comparative hybridization onto cDNA microarrays. Oncogene 22:1247-1252.
2. French CA, Miyoshi I, Aster JC, Kubonishi I, Kroll TG, Dal Cin P, Vargas SO, Perez-Atayde AR, Fletcher JA. 2001. BRD4 bromodomain gene rearrangement in aggressive carcinoma with translocation t(15;19). Am J Pathol 159:1987-1992.
3. French CA, Miyoshi I, Kubonishi I, Grier HE, Perez-Atayde AR, Fletcher JA. 2003. BRD4-NUT fusion oncogene: A novel mechanism in aggressive carcinoma. Cancer Res 63:304-307.
4. Kallioniemi A, Kallioniemi OP, Sudar D, Rutovitz D, Gray JW, Waldman F, Pinkel D. 1992. Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors. Science 258:818-821.
5. Kolomietz E, Al-Maghrabi J, Brennan S, Karaskova J, Minkin S, Lipton J, Squire JA. 2001. Primary chromosomal rearrangements of leukemia are frequently accompanied by extensive submicroscopic deletions and may lead to altered prognosis. Blood 97:3581-3588.
6. Lane TM, Strefford JC, Yanez-Munoz RJ, Purkiss P, Forsythe E, Nia T, Hines J, Lu YJ, Oliver RT. The identification of a recurrent t(4;6) chromosome translocation in prostate cancer. J Urol (in press).
7. Mantripragada KK, Buckley PG, de Stahl TD, Dumanski JP. 2004. Genomic microarrays in the spotlight. Trends Genet 20:87-94.
8. Mertens F, Johansson B, Hoglund M, Mitelman F. 1997. Chromosomal imbalance maps of malignant solid tumors: A cytogenetic survey of 3185 neoplasms. Cancer Res 57:2765-2780.
9. Moon E, Lee R, Near R, Weintraub L, Wolda S, Lerner A. 2002. Inhibition of PDE3B augments PDE4 inhibitor-induced apoptosis in a subset of patients with chronic lymphocytic leukemia. Clin Cancer Res 8:589-595.
10. Mulholland DJ, Dedhar S, Wu H, Nelson CC. 2006. PTEN and GSK3β: Key regulators of progression to androgen-independent prostate cancer. Oncogene 25:329-337.
11. Nupponen NN, Hyytinen ER, Kallioniemi AH, Visakorpi T. 1998. Genetic alterations in prostate cancer cell lines detected by comparative genomic hybridization. Cancer Genet Cytogenet 101:53-57.
12. Popescu NC, Zimonjic DB. 2002. Chromosome-mediated alterations of the MYC gene in human cancer. J Cell Mol Med 6:151-159.
13. Schrock E, du Manoir S, Veldman T, Schoell B, Wienberg J, Ferguson-Smith MA, Ning Y, Ledbetter DH, Bar-Am I, Soenksen D, Garini Y, Ried T. 1996. Multicolor spectral karyotyping of human chromosomes. Science 273:494-497.
14. Sharrard RM, Maitland NJ. 2000. Alternative splicing of the human PTEN/MMAC1/TEP1 gene. Biochim Biophys Acta 1494:282-285.
15. Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber T, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, Willis J, Dawson D, Willson JK, Gazdar AF, Hartigan J, Wu L, Liu C, Parmigiani G, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE. 2006. The Consensus coding sequences of human breast and colorectal cancers. Science. 314: 268-274.
16. Speicher MR, Gwyn Ballard S, Ward DC. 1996. Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12: 368-375.
17. Strefford JC, Lane TM, Hill A, LeRoux L, Foot NJ, Shipley J, Oliver RT, Lu YJ, Young BD. 2006. Molecular characterisation of the t(1;15)(p22;q22) translocation in the prostate cancer cell line LNCaP. Cvtogenet Genome Res 112:45-52.
18. Strefford JC, Lillington DM, Young BD, Oliver RT. 2001. The use of multicolor fluorescence technologies in the characterization of prostate carcinoma cell lines: A comparison of multiplex fluorescence in situ hybridization and spectral karvotyping data. Cancer Genet Cytogenet 124:112-121.
19. Su XY, Busson M, Della Valle V, Ballerini P, Dastugue N, Talmant P, Ferrando AA, Baudry-Bluteau D, Romana S, Berger R, Bernard OA. 2004. Various types of rearrangements target TLX3 locus in T-cell acute lymphoblastic leukemia. Genes Chromosomes Cancer 41:243-249.
20. Tomlins SA, Rhodes DR, Perner S, Dhanasekaran SM, Mehra R, Sun XW, Varambally S, Cao X, Tchinda J, Kuefer R, Lee C, Montie JE, Shah RB, Pienta KJ, Rubin MA, Chinnaiyan AM. 2005. Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer. Science 310:644-648.
21. van der Burg M, Smit B, Brinkhof B, Barendregt BH, Verschuren MC, Dib M, Beverloo HB, van Dongen JJ, Langerak AW. 2002. A single split-signal FISH probe set allows detection of TAL1 translocations as well as SIL-TAL1 fusion genes in a single test. Leukemia 16:755-761.
22. Watson SK, Deleeuw RJ, Horsman DE, Squire JA, Lam WL. 2007. Cytogenetically balanced translocations are associated with focal copy number alterations. Hum Genet 120:795-805.