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Volumn 39, Issue 2, 2007, Pages 125-131

Evaluation of an in-house genotyping resistance test for HIV-1 drug resistance interpretation and genotyping

Author keywords

CRF01_AE; Drug resistance; Genotyping resistance test; HIV 1; In house

Indexed keywords

PROTEINASE; RNA DIRECTED DNA POLYMERASE;

EID: 34248639310     PISSN: 13866532     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jcv.2007.03.008     Document Type: Article
Times cited : (33)

References (29)
  • 1
    • 0037825993 scopus 로고    scopus 로고
    • Patterns of point mutations associated with antiretroviral drug treatment failure in CRF01_AE (subtype E) infection differ from subtype B infection
    • Ariyoshi K., Matsuda M., Miura H., Tateishi S., Yamada K., and Sugiura W. Patterns of point mutations associated with antiretroviral drug treatment failure in CRF01_AE (subtype E) infection differ from subtype B infection. J Acquir Immune Defic Syndr 33 (2003) 336-342
    • (2003) J Acquir Immune Defic Syndr , vol.33 , pp. 336-342
    • Ariyoshi, K.1    Matsuda, M.2    Miura, H.3    Tateishi, S.4    Yamada, K.5    Sugiura, W.6
  • 2
    • 0038362500 scopus 로고    scopus 로고
    • Performance of two commercially available sequence-based HIV-1 genotyping systems for the detection of drug resistance against HIV type1 group M subtypes
    • Beddows S., Galpin S., Kazmi S.H., Ashraf A., Johargy A., Frater A.J., et al. Performance of two commercially available sequence-based HIV-1 genotyping systems for the detection of drug resistance against HIV type1 group M subtypes. J Med Virol 70 (2003) 337-342
    • (2003) J Med Virol , vol.70 , pp. 337-342
    • Beddows, S.1    Galpin, S.2    Kazmi, S.H.3    Ashraf, A.4    Johargy, A.5    Frater, A.J.6
  • 3
    • 0034665229 scopus 로고    scopus 로고
    • Drug-resistant reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type 1 found in Brazilian patients failing HAART
    • Caride E., Brindeiro R., Hertogs K., Larder B., Dehertogh P., Machado E., et al. Drug-resistant reverse transcriptase genotyping and phenotyping of B and non-B subtypes (F and A) of human immunodeficiency virus type 1 found in Brazilian patients failing HAART. Virology 275 (2000) 107-115
    • (2000) Virology , vol.275 , pp. 107-115
    • Caride, E.1    Brindeiro, R.2    Hertogs, K.3    Larder, B.4    Dehertogh, P.5    Machado, E.6
  • 4
    • 0034685037 scopus 로고    scopus 로고
    • Antiretroviral therapy in adults: updated recommendations of the International AIDS Society, USA Panel
    • Carpenter C.C., Cooper D.A., Fischl M.A., Gatell J.M., Gazzard D.A., Hammer S.M., et al. Antiretroviral therapy in adults: updated recommendations of the International AIDS Society, USA Panel. J Am Med Assoc 283 (2000) 381-390
    • (2000) J Am Med Assoc , vol.283 , pp. 381-390
    • Carpenter, C.C.1    Cooper, D.A.2    Fischl, M.A.3    Gatell, J.M.4    Gazzard, D.A.5    Hammer, S.M.6
  • 6
    • 2942566079 scopus 로고    scopus 로고
    • Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for sequence-based analysis of diverse human immunodeficiency virus type 1 strains
    • Eshleman S.H., Hackett Jr. J., Swanson P., Cunningham S.P., Drews B., Brennan C., et al. Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for sequence-based analysis of diverse human immunodeficiency virus type 1 strains. J Clin Microbiol 42 (2004) 2711-2717
    • (2004) J Clin Microbiol , vol.42 , pp. 2711-2717
    • Eshleman, S.H.1    Hackett Jr., J.2    Swanson, P.3    Cunningham, S.P.4    Drews, B.5    Brennan, C.6
  • 7
    • 0035895674 scopus 로고    scopus 로고
    • Clinical and laboratory guidelines for the use of HIV-1 drug resistance testing as part of treatment management: recommendations for the European setting
    • The EuroGuidelines Group for HIV resistance
    • The EuroGuidelines Group for HIV resistance, and EuroGuidelines Group for HIV Resistance. Clinical and laboratory guidelines for the use of HIV-1 drug resistance testing as part of treatment management: recommendations for the European setting. AIDS 15 (2001) 309-320
    • (2001) AIDS , vol.15 , pp. 309-320
    • EuroGuidelines Group for HIV Resistance1
  • 8
    • 0035504499 scopus 로고    scopus 로고
    • Evaluation of two commercial kits for the detection of genotypic drug resistance on a panel of HIV type1 subtypes A through J
    • Fontaine E., Riva C., Peeters M., Schmit J.C., Delaporte E., Van Laethem K., et al. Evaluation of two commercial kits for the detection of genotypic drug resistance on a panel of HIV type1 subtypes A through J. J Acquir Immune Defic Syndr 28 (2001) 254-258
    • (2001) J Acquir Immune Defic Syndr , vol.28 , pp. 254-258
    • Fontaine, E.1    Riva, C.2    Peeters, M.3    Schmit, J.C.4    Delaporte, E.5    Van Laethem, K.6
  • 9
    • 33746192134 scopus 로고    scopus 로고
    • Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity
    • Gifford R., deOliveira T., Rambaut A., Myers R.E., Gale C.V., Dunn D., et al. Assessment of automated genotyping protocols as tools for surveillance of HIV-1 genetic diversity. AIDS 20 (2006) 1521-1529
    • (2006) AIDS , vol.20 , pp. 1521-1529
    • Gifford, R.1    deOliveira, T.2    Rambaut, A.3    Myers, R.E.4    Gale, C.V.5    Dunn, D.6
  • 11
    • 0343183245 scopus 로고    scopus 로고
    • Antiretroviral drug resistance testing in adult HIV-1 infection: recommendations of an International AIDS Society-USA Panel
    • Hirsch M.S., Brun-Vezinet F., D'Aquila R.T., Hammer S.M., Johnson V.A., Kuritzkes D.R., et al. Antiretroviral drug resistance testing in adult HIV-1 infection: recommendations of an International AIDS Society-USA Panel. JAMA 283 (2000) 2417-2426
    • (2000) JAMA , vol.283 , pp. 2417-2426
    • Hirsch, M.S.1    Brun-Vezinet, F.2    D'Aquila, R.T.3    Hammer, S.M.4    Johnson, V.A.5    Kuritzkes, D.R.6
  • 12
    • 0037337484 scopus 로고    scopus 로고
    • Performance characteristics of human immunodeficiency virus type 1 (HIV-1) genotyping systems in sequence-based analysis of subtypes other than HIV-1 subtype B
    • Jagodzinski L.L., Cooley J.D., Weber M., and Michael N.L. Performance characteristics of human immunodeficiency virus type 1 (HIV-1) genotyping systems in sequence-based analysis of subtypes other than HIV-1 subtype B. J Clin Microbiol 41 (2003) 998-1003
    • (2003) J Clin Microbiol , vol.41 , pp. 998-1003
    • Jagodzinski, L.L.1    Cooley, J.D.2    Weber, M.3    Michael, N.L.4
  • 14
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
    • Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5 (2004) 150-163
    • (2004) Brief Bioinform , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 15
    • 0024973417 scopus 로고
    • Avoiding false positives with PCR
    • Kwok S., and Higushi R. Avoiding false positives with PCR. Nature 339 (1989) 227-238
    • (1989) Nature , vol.339 , pp. 227-238
    • Kwok, S.1    Higushi, R.2
  • 17
    • 0037210830 scopus 로고    scopus 로고
    • A simple and sensitive 'in-house' method for determining genotypic drug resistance of HIV-1
    • Lindstrom A., and Albert J. A simple and sensitive 'in-house' method for determining genotypic drug resistance of HIV-1. J Virol Methods 107 (2003) 45-51
    • (2003) J Virol Methods , vol.107 , pp. 45-51
    • Lindstrom, A.1    Albert, J.2
  • 18
    • 33745621323 scopus 로고    scopus 로고
    • Global epidemiology of HIV
    • McCutchan F.E. Global epidemiology of HIV. J Med Virol 78 (2006) S7-S12
    • (2006) J Med Virol , vol.78
    • McCutchan, F.E.1
  • 19
    • 0035209291 scopus 로고    scopus 로고
    • Performance of Applied Biosystems ViroSeq HIV-1 Genotyping System for sequence-based analysis of non-subtype B human immunodeficiency virus type 1 from Uganda
    • Mracna M., Becker-Pergola G., Dileanis J., Guay L.A., Cunningham S., Jackson J.B., et al. Performance of Applied Biosystems ViroSeq HIV-1 Genotyping System for sequence-based analysis of non-subtype B human immunodeficiency virus type 1 from Uganda. J Clin Microbiol 39 (2001) 4323-4327
    • (2001) J Clin Microbiol , vol.39 , pp. 4323-4327
    • Mracna, M.1    Becker-Pergola, G.2    Dileanis, J.3    Guay, L.A.4    Cunningham, S.5    Jackson, J.B.6
  • 20
    • 0037904614 scopus 로고    scopus 로고
    • Assessment of HIV-1 subtyping for Cameroon strains using phylogenetic analysis of pol gene sequences
    • Njouom R., Pasquier C., Sandres-Saune K., Harter A., Souyris C., and Izopet J. Assessment of HIV-1 subtyping for Cameroon strains using phylogenetic analysis of pol gene sequences. J Virol Methods 110 (2003) 1-8
    • (2003) J Virol Methods , vol.110 , pp. 1-8
    • Njouom, R.1    Pasquier, C.2    Sandres-Saune, K.3    Harter, A.4    Souyris, C.5    Izopet, J.6
  • 22
    • 85081444749 scopus 로고    scopus 로고
    • Roche Diagnostic Systems. AMPLICOR HIV-1 MONITOR Test Package Insert. Roche Diagnostic Systems, Branchburg, NJ, 1996;8-9.
  • 23
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 (1987) 406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 25
    • 33645305135 scopus 로고    scopus 로고
    • A sensitive in-house RT-PCR genotyping system for combined detection of plasma HIV-1 and assessment of drug resistance
    • Steegen K., Demecheleer E., De Cabooter N., Nges D., Temmerman M., Ndumbe P., et al. A sensitive in-house RT-PCR genotyping system for combined detection of plasma HIV-1 and assessment of drug resistance. J Virol Methods 133 (2006) 137-145
    • (2006) J Virol Methods , vol.133 , pp. 137-145
    • Steegen, K.1    Demecheleer, E.2    De Cabooter, N.3    Nges, D.4    Temmerman, M.5    Ndumbe, P.6
  • 26
    • 7744239046 scopus 로고    scopus 로고
    • Phylogenetic analysis of HIV-1 transmission: pol gene sequences are sufficient to clarify true relationships between patient isolates
    • Sturmer M., Preiser W., Gute P., Nisius G., and Doerr H.W. Phylogenetic analysis of HIV-1 transmission: pol gene sequences are sufficient to clarify true relationships between patient isolates. AIDS 18 (2004) 2109-2113
    • (2004) AIDS , vol.18 , pp. 2109-2113
    • Sturmer, M.1    Preiser, W.2    Gute, P.3    Nisius, G.4    Doerr, H.W.5
  • 27
    • 0042869608 scopus 로고    scopus 로고
    • Molecular characterization of 39 HIV isolates representing group M (subtypes A-G) and group O: sequence analysis of gag p24, pol integrase, and env gp41
    • Swanson P., Devare S.G., and Hackett Jr. J. Molecular characterization of 39 HIV isolates representing group M (subtypes A-G) and group O: sequence analysis of gag p24, pol integrase, and env gp41. AIDS Res Hum Retroviruses 19 (2003) 625-629
    • (2003) AIDS Res Hum Retroviruses , vol.19 , pp. 625-629
    • Swanson, P.1    Devare, S.G.2    Hackett Jr., J.3
  • 29
    • 33644655964 scopus 로고    scopus 로고
    • Clinical utility of genotyping resistance test on determining the mutation patterns in HIV-1 CRF01_AE and subtype B patients receiving antiretroviral therapy in Hong Kong
    • Yam W.C., Chen J.H.K., Wong K.H., Chan K., Cheng V.C.C., Lam H.Y., et al. Clinical utility of genotyping resistance test on determining the mutation patterns in HIV-1 CRF01_AE and subtype B patients receiving antiretroviral therapy in Hong Kong. J Clin Virol 35 (2006) 454-457
    • (2006) J Clin Virol , vol.35 , pp. 454-457
    • Yam, W.C.1    Chen, J.H.K.2    Wong, K.H.3    Chan, K.4    Cheng, V.C.C.5    Lam, H.Y.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.