Crystal structure of recombinant human stromal cell-derived factor-1α

Proteins: Structure, Function and Genetics

Volumn 67, Issue 4, 2007, Pages 1193-1197

  Eui, Kyung Ryu ^a   Tae, Gyun Kim ^a   Taek, Hun Kwon ^a   In, Duk Jung ^b   Ryu, Dowook ^a   Park, Yeong Min ^b   Kim, Junhong ^b   Kyo, Han Ahn ^a   Ban, Changill ^a  

^a Pohang University of Science and Technology (POSTECH)   (South Korea)

^b Pusan National University School of Medicine   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

STROMAL CELL DERIVED FACTOR 1ALPHA;

ARTICLE; CHEMICAL ANALYSIS; CHEMOTAXIS; CRYSTAL STRUCTURE; ESCHERICHIA COLI; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN FOLDING; PROTEIN STRUCTURE; RECEPTOR BINDING;

CATIONS; CHEMOKINES, CXC; CRYSTALLOGRAPHY, X-RAY; HUMANS; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, TERTIARY; RECOMBINANT PROTEINS; STRUCTURAL HOMOLOGY, PROTEIN;

EID: 34248577928     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.21350     Document Type: Article

References (20)

1. Zlotnik A, Yoshie O. Chemokines: a new classification system and their role in immunity. Immunity 2000;12:121-127.
2. Dewan MZ, Ahmed S, Iwasaki Y, Ohba K, Toi M, Yamamoto N. Stromal cell-derived factor-1 and CXCR4 receptor interaction in tumor growth and metastasis of breast cancer. Biomed Pharmacother 2006;60:273-276.
3. Baggiolini M. Chemokines in pathology and medicine. J Int Med 2001;250:91-104.
4. Tashiro K, Tada H, Heilker R, Shirozu M, Nakano T, Honjo T. Signal sequence trap: a cloning stategy for secteted proteins and type I membrane proteins. Science 1993;261:600-603.
5. Nagasawa T, Hirota S, Tachibana K, Takakura N, Nishikawa S-I, Kitamura Y, Yoshida N, Kikutani H, Kishimoto T. Defects of B-cell lymphopoiesis and bone-marrow myelopoiesis in mice lacking the CXC chemokine PBSF/SDF-1. Nature 1996;382:635-638.
6. Doitsidou M, Reichman-Fried M, Stebler J, Koprunner M, Dorries J, Meyer D, Esguerra CV, Leung T, Raz E. Guidance of primordial germ cell migration by the chemokine SDF-1. Cell 2002;111:647-659.
7. Nagasawa T, Tachibana K, Kishimoto T. A novel CXC chemokine PBSF/SDF-1 and its receptor CXCR4: their functions in development, hematopoiesis and HIV infection. Semin Immunol 1998;10:179-185.
8. Ara T, Nakamura Y, Egawa T, Sugiyama T, Abe K, Kishimoto T, Matsui Y, Nagasawa T. Impaired colonization of the gonads by primodial germ cells in mice lacking a chemokine, stromal cell-derived factor-1 (SDF-1). Proc Natl Acad Sci USA 2003;100:5319-5323.
9. Ma Q, Jones D, Borghesani PR, Segal RA, Nagasawa T, Kishimoto T, Bronson RT, Springer TA. Impaired B-lymphopoiesi, myelopoiesis, and detailed cerebellar neuron migration in CXCR4- and SDF-1- deficient mice. Proc Natl Acad Sci USA 1998;95:9448-9453.
10. Ryu EK, Cho KJ, Kim JK, Harmer NJ, Blundell TL, Kim KH. Expression and purification of recombinant human fibroblast growth factor receptor in Escherichia coli. Protein Expr Purif 2006;49:15-22.
11. Otwinowski X, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-326.
12. Vagin AA, Teplyakov A. MOLREP: an automated program for molecular replacement. J Appl Crystallogr 1997;30:1022-1025.
13. Ohnishi Y, Senda T, Nandhagopap N, Sugimoto K, Shioda T, Nagai Y Mitsui T. Crystal structure of recombinant native SDF-1α with additional mutagenesis studies: an attempt at a more comprehensive interpretation of accumulated structure-activity relationship data. J Interferon Cytokine Res 2000;20:691-700.
14. Emsley P, Cowtan K. Coot: model building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 2004;60:2126-2132.
15. Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL. Crystallography and NMR system: a new software suite for macromolecular structure determination. Acta Crystallogr D Biol Crystallogr 1998;54:905-921.
16. Laskowski RA, Macarthur MW, Moss DS, Thornton JM. PROCHECK: a program to check the stereochemical quality for assessing the accuracy of protein structures. J Appl Crystallogr 1993;26:283-291.
17. Sachpatzidis A, Benton BK, Manfredi JP, Wang H, Hamilton A, Dohlman HG, Lolis E. Identification of allostericpeptide agonists of CXCR4. J Biol Chem 2003;278:896-907.
18. Crump MP, Gong J-H, Loetscher P, Rajarathnam K, Amara A, Arenzana-Seisdedos F, Virelizier J-L, Baggiolini M, Sykes BD, Clark-Lewis I. Solution structure and basis for functional activity of stromal cell-derived factor-1: dissociation of CXCR4 activation form binding and inhibition of HIV-1. EMBO J 1997;16:6996-7007.
19. Dealwis C, Fernandez EJ, Thompson DA, Simon RJ, Siani MA, Lolis E. Crystal structure of chemically synthesized [N33A] stromal cell-derived factor-1α, a potent ligand for the HIV-1 fusion coreceptor. Proc Natl Acad Sci USA 1998;95:6941-6946.
20. Huang X, Shen J, Cui M, Shen L, Luo X, Ling K, Pei G, Jiang H, Chen K. Molecular dynamics simulations on SDF-1α: binding with CXCR4 receptor. Biophys J 2003;84:171-184.