-
1
-
-
32344452680
-
Disseminating structural genomics data to the public: From a data dump to an animated story
-
Abagyan,R. et al. (2006) Disseminating structural genomics data to the public: From a data dump to an animated story. Trends Biochem. Sci., 31, 76-78.
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 76-78
-
-
Abagyan, R.1
-
2
-
-
14144256567
-
Normal modes for predicting protein motions: A comprehensive database assessment and associated Web tool
-
Alexandrov,V. et al. (2005) Normal modes for predicting protein motions: A comprehensive database assessment and associated Web tool. Protein Sci., 14, 633-643.
-
(2005)
Protein Sci
, vol.14
, pp. 633-643
-
-
Alexandrov, V.1
-
3
-
-
0030623823
-
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
-
Bahar,I. et al. (1997) Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold. Des. 2, 173-181.
-
(1997)
Fold. Des
, vol.2
, pp. 173-181
-
-
Bahar, I.1
-
4
-
-
25844431698
-
Coarse-grained normal mode analysis in structural biology
-
Bahar,I. and Rader,A.J. (2005) Coarse-grained normal mode analysis in structural biology. Curr. Opin. Struct. Biol., 15, 586-592.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 586-592
-
-
Bahar, I.1
Rader, A.J.2
-
5
-
-
3242891875
-
MoViES: Molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids
-
Cao,Z.W. et al. (2004) MoViES: Molecular vibrations evaluation server for analysis of fluctuational dynamics of proteins and nucleic acids. Nucleic Acids Res., 32, W679-W685.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Cao, Z.W.1
-
6
-
-
21644473891
-
Representing receptor flexibility in ligand docking through relevant normal modes
-
Cavasotto,C.N. et al. (2005) Representing receptor flexibility in ligand docking through relevant normal modes. J. Am. Chem. Soc., 127, 9632-9640.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 9632-9640
-
-
Cavasotto, C.N.1
-
7
-
-
0037436340
-
Mega-Dalton biomolecular motion captured from electron microscopy reconstructions
-
Chacon,P. et al. (2003) Mega-Dalton biomolecular motion captured from electron microscopy reconstructions. J. Mol. Biol., 326 485-492.
-
(2003)
J. Mol. Biol
, vol.326
, pp. 485-492
-
-
Chacon, P.1
-
8
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen,K. (1998) Analysis of domain motions by approximate normal mode calculations. Proteins, 33, 417-429.
-
(1998)
Proteins
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
9
-
-
25444528449
-
WEBnm a web application for normal mode analyses of proteins
-
Hollup,S.M. et al. (2005) WEBnm" a web application for normal mode analyses of proteins. BMC Bioinformatics, 6, 52.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 52
-
-
Hollup, S.M.1
-
10
-
-
0035427398
-
Protein flexibility predictions using graph theory
-
Jacobs,D.J. et al. (2001) Protein flexibility predictions using graph theory. Proteins, 44, 150-165.
-
(2001)
Proteins
, vol.44
, pp. 150-165
-
-
Jacobs, D.J.1
-
11
-
-
0037666985
-
Conformational flexibility of pyruvate dehydrogenase complexes: A computational analysis by quantized elastic deformational model
-
Kong,Y. et al. (2003) Conformational flexibility of pyruvate dehydrogenase complexes: A computational analysis by quantized elastic deformational model. J. Mol. Biol., 330, 129-135.
-
(2003)
J. Mol. Biol
, vol.330
, pp. 129-135
-
-
Kong, Y.1
-
12
-
-
4043116913
-
Predictions of protein flexibility: First-order measures
-
Kovacs,J.A. et al. (2004) Predictions of protein flexibility: first-order measures. Proteins, 56, 661-668.
-
(2004)
Proteins
, vol.56
, pp. 661-668
-
-
Kovacs, J.A.1
-
13
-
-
33747858757
-
NOMAD-Ref: Visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
-
Lindahl,E. et al. (2006) NOMAD-Ref: Visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Res., 34, W52-W56.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Lindahl, E.1
-
14
-
-
14844286108
-
Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes
-
Ma,J. (2005) Usefulness and limitations of normal mode analysis in modeling dynamics of biomolecular complexes. Structure, 13, 373-380.
-
(2005)
Structure
, vol.13
, pp. 373-380
-
-
Ma, J.1
-
15
-
-
33646200456
-
Investigating the local flexibility of functional residues in hemoproteins
-
Sacquin-Mora,S. and Lavery,R. (2006) Investigating the local flexibility of functional residues in hemoproteins. Biophys. J., 90, 2706-2717.
-
(2006)
Biophys. J
, vol.90
, pp. 2706-2717
-
-
Sacquin-Mora, S.1
Lavery, R.2
-
16
-
-
33645019704
-
An enhanced elastic network model to represent the motions of domain-swapped proteins
-
Song,G. and Jernigan,R.L. (2006) An enhanced elastic network model to represent the motions of domain-swapped proteins. Proteins, 63 197-209.
-
(2006)
Proteins
, vol.63
, pp. 197-209
-
-
Song, G.1
Jernigan, R.L.2
-
17
-
-
3242875210
-
ElNemo: A normal mode web server for protein movement analysis and the generation of templates for molecular replacement
-
Suhre,K. and Sanejouand,Y.H. (2004) ElNemo: A normal mode web server for protein movement analysis and the generation of templates for molecular replacement. Nucleic Acids Res., 32, W610-W614.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Suhre, K.1
Sanejouand, Y.H.2
-
18
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama,F. and Sanejouand,Y.H. (2001) Conformational change of proteins arising from normal mode calculations. Protein Eng., 14, 1-6.
-
(2001)
Protein Eng
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.H.2
-
19
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion,M.M. (1996) Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys. Rev. Lett., 77, 1905-1908.
-
(1996)
Phys. Rev. Lett
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
20
-
-
4544280144
-
ProMode: A database of normal mode analyses on protein molecules with a full-atom model
-
Wako,H. et al. (2004) ProMode: A database of normal mode analyses on protein molecules with a full-atom model. Bioinformatics, 20 2035-2043.
-
(2004)
Bioinformatics
, vol.20
, pp. 2035-2043
-
-
Wako, H.1
-
21
-
-
20444429274
-
iGNM: A database of protein functional motions based on Gaussian Network Model
-
Yang,L.W. et al. (2005) iGNM: A database of protein functional motions based on Gaussian Network Model. Bioinformatics, 21, 2978-2987.
-
(2005)
Bioinformatics
, vol.21
, pp. 2978-2987
-
-
Yang, L.W.1
-
22
-
-
33646742004
-
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
-
Zheng,W. et al. (2006) Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations. Proc. Natl Acad. Sci. USA, 103, 7664-7669.
-
(2006)
Proc. Natl Acad. Sci. USA
, vol.103
, pp. 7664-7669
-
-
Zheng, W.1
-
23
-
-
0345687171
-
A comparative study of motor-protein motions by using a simple elastic-network model
-
Zheng,W. and Doniach,S. (2003) A comparative study of motor-protein motions by using a simple elastic-network model. Proc. Natl Acad. Sci. USA, 100, 13253-13258.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 13253-13258
-
-
Zheng, W.1
Doniach, S.2
|