Identification of QTL for resistance and susceptibility to Stagonospora meliloti in autotetraploid lucerne

Theoretical and Applied Genetics

Volumn 114, Issue 8, 2007, Pages 1427-1435

  Musial, J M ^a   Mackie, J M ^a   Armour, D J ^a   Phan, H T T ^b   Ellwood, S E ^b   Aitken, K S ^c   Irwin, J A G ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b MURDOCH UNIVERSITY   (Australia)

^c CSIRO   (Australia)

Author keywords

Alfalfa; Molecular markers; QTL mapping

Indexed keywords

BIOMARKERS; FUNGUS ATTACK; GENES; MAPPING; POLYMORPHISM; REGRESSION ANALYSIS;

ALFALFA; AUTOTETRAPLOID MAP; PHENOTYPIC VARIATION; QTL MAPPING; SIMPLE SEQUENCE REPEAT (SSR) MARKERS;

DISEASES;

ALFALFA; ARTICLE; ASCOMYCETES; GENETIC LINKAGE; GENETIC PREDISPOSITION; GENETICS; MICROBIOLOGY; PHENOTYPE; PLANT DISEASE; POLYPLOIDY; QUANTITATIVE TRAIT LOCUS;

ASCOMYCOTA; GENETIC PREDISPOSITION TO DISEASE; LINKAGE (GENETICS); MEDICAGO SATIVA; PHENOTYPE; PLANT DISEASES; POLYPLOIDY; QUANTITATIVE TRAIT LOCI;

MEDICAGO SATIVA; MEDICAGO TRUNCATULA; STAGONOSPORA; STAGONOSPORA MELILOTI;

EID: 34248365197     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-007-0528-y     Document Type: Article

References (46)

1. Aguilar V, Stamp P, Winzeler M, Winzeler H, Schachermayr G, Keller B, Zanetti S, Messmer MM (2005) Inheritance of field resistance to Stagonospora nodorum leaf and glume blotch and correlations with other morphological traits in hexaploid wheat (Triticum aestivum L.) Theor Appl Genet 111:325-336
2. Barbetti MJ (1988) Fungal diseases of annual medics. In: National Annual Medic Improvement Program - A workshop of the Wheat Research Council. Wheat Research Council, Melbourne, pp 71-75
3. Bingham ET, Groose RW, Woodfield DR, Kidwell KK (1994) Complementary gene interactions in alfalfa are greater in autotetraploids than diploids. Crop Sci 34:823-829
4. Brouwer DJ, Osborn TC (1999) A molecular marker linkage map of tetraploid alfalfa (Medicago sativa L.). Theor Appl Genet 99:1194-1200
5. Brummer EC, Bouton JH, Kochert G (1993) Development of an RFLP map in diploid alfalfa. Theor Appl Genet 86:329-332
6. Choi HK, Kim D, Uhm T, Limpens E, Lim H, Mun JH, Kalo P, Varma Penmetsa R, Seres A, Kulikova O, Roe BA, Bisseling T, Kiss GB, Cook DR (2004a) A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa. Genetics 166:1463-1502
7. Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Nevin DY, Cook DR (2004b) Estimating genome conservation between crop and model legume species. Proc Natl Acad Sci USA 101:15289-15294
8. Echt CS, Kidwell KK, Knapp SJ, Osborn TC, McCoy TJ (1994) Linkage mapping in diploid alfalfa (Medicago sativa). Genome 37:61-71
9. Erwin DC, Khan RA, Ribeiro OK, Lehman WF (1987) Growth, sporulation, and pathogenicity of Stagonospora meliloti and selection for resistance to crown rot and leaf spot in alfalfa. Plant Dis 71:181-185
10. Fisher RA (1947) The theory of polysomic inheritance. Philos Trans R Soc B 233:55-87
11. Gutierrez MV, VazPatto MC, Huguet T, Cubero JI, Moreno MT, Torres AM (2005) Cross-species amplification of Medicago truncatula microsatellites across three major pulse crops. Theor Appl Genet 110:1210-1217
12. Hackett CA, Bradshaw JE, Meyer RC, McNicol JW, Milbourne D, Waugh R (1998) Linkage analysis in tetraploid potato: a simulation study. Genet Res 71:143-154
13. Hackett CA, Milne I, Bradshaw JE, Luo ZW (2006) TetraploidMap for Windows, Biomathematics and Statistics Scotland. ftp://www.ftp.bioss.sari.ac.uk/ pub/cah
14. Irwin JAG (1989) Diseases of pasture legumes in Australia. In: Marten GC, Matches AG, Barnes RF, Brougham RW, Clements RJ, Sheath GW (eds) Persistence of forage legumes. ASA Inc, Madison
15. Irwin JAG, Aitken KS, Mackie JM, Musial JM (2006) Lucerne genetic improvement for quantitatively inherited anthracnose (Colletotrichum trifolii) resistance facilitated by molecular markers. Australas Plant Path 35:573-579
16. Irwin JAG, Lloyd DL, Lowe KF (2001) Lucerne biology and genetic improvement - an analysis of past activities and future goals in Australia. Aust J Agric Res 52:699-712
17. Irwin JAG, Mackie JM, Marney TS, Musial JM, Roberts S (2004) Incidence of Stagonospora meliloti and Acrocalymma medicaginis in lucerne crowns and roots in eastern Australia, their comparative aggressiveness to lucerne and inheritance of reaction to S. meliloti in lucerne. Australas Plant Path 33:61-67
18. Jones FR, Weimer JL (1938) Stagonospora leaf spot and root rot of forage legumes. J Agric Res 57:791-812
19. Julier B, Fajoulot S, Barre P, Cardinet G, Santoni S, Huguet T, Huyghe C (2003) Construction of two genetic linkage maps in cultivated tetraploid alfalfa (Medicago sativa) using microsatellite and AFLP markers. BMC Plant Biol 3:9
20. Kaló P, Endre G, Zimányi L, Csanádi G, Kiss GB (2000) Construction of an improved linkage map of diploid alfalfa (Medicago sativa). Theor Appl Genet 100:641-657
21. Kalo P, Seres A, Taylor SA, Jakab J, Kevei Z, Kereszt A, Endre G, Ellis TH, Kiss GB (2004) Comparative mapping between Medicago sativa and Pisum sativum. Mol Genet Genomics 272:235-246
22. Kiss GB, Csanádi G, Kálmán K, Kaló P, Okrész L (1993) Construction of a basic genetic map for alfalfa using RFLP, RAPD, isozyme and morphological markers. Mol Gen Genet 238:129-137
23. Leath KT (1989) Diseases and forage stand persistence in the United States. In: Marten GC, Matches AG, Barnes RF, Brougham RW, Clements RF, Sheath GW (eds) Persistence of forage legumes. ASA Inc, Madison
24. Liu ZH, Friesen TL, Rasmussen JB, Ali S, Meinhardt SW, Faris JD (2004) Quantitative trait loci analysis and mapping of seedling resistance to Stagonospora nodorum leaf blotch in wheat. Phytopathology 94:1061-1067
25. Mackie JM, Musial JM, Armour DJ, Phan HTT, Ellwood SE, Aitken KS, Irwin JAG (2007) Identification of QTL for reaction to three races of Colletotrichum trifolii and further analysis of inheritance of resistance in autotetraploid lucerne. Theor Appl Genet. doi:10.1007/s00122-007-0527-z
26. Manglitz GR, Ratcliffe RH (1988) Insects and mites. In: Hanson AA (ed) Alfalfa and alfalfa improvement. American Society of Agronomy, Madison, pp 671-704
27. Manly KF, Cudmore RH, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930-932
28. Mather K (1936) Segregation and linkage in autotetraploids. J Genet 32:287-314
29. Mather K (1951) The measurement of linkage in heredity. Methuen and Co Ltd, London
30. Michaud R, Lehman WF, Rumbaugh MD (1988) World distribution and historical development. In: Alfalfa and alfalfa improvement. Agronomy Monograph 29. American Society of Agronomy: Madison, pp 25-91
31. Moore G, Devos KM, Wang Z, Gale MD (1995) Cereal genome evolution, grasses, line up and form a circle. Curr Biol 5:737-739
32. Mun JH, Kim DJ, Choi HK, Gish J, Debellé F, Mudge J, Denny R, Endre G, Saurat O, Dudez AM, Kiss GB, Roe B, Young ND, Cook DR (2006) Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics 172:2541-2555
33. Musial JM, Aitken KS, Mackie JM, Irwin JAG (2005) A genetic linkage map in autotetraploid lucerne adapted to northern Australia, and use of the map to identify DNA markers linked to resistance to Phytophthora medicaginis. Aust J Agric Res 56:333-344
34. Nelson M, Phan H, Moolhuijzen P, Hane J, Williams A, Fosu-Nyarko J, Ksiazkiewicz M, Scobie M, Cakir M, Jones M, Barker S, Wolko B, Oliver R, Cowling W (2006) The first gene-based map of Lupinus angustifolius L. - location of domestication genes and conserved synteny with Medicago truncatula. Theor Appl Genet 113:225-238
35. Nettleton D (2000) Accounting for variability in the use of permutation testing to detect quantitative trait loci. Biometrics 56:52-58
36. Obert DE, Skinner DZ, Stuteville DL (2000) Association of AFLP markers with downy mildew resistance in autotetraploid alfalfa. Mol Breeding 6:287-294
37. Pearson CJ, Brown R, Collins WJ, Archer KA, Wood MS, Petersen C, Boothe B (1997) An Australian temperate pastures database. Aust J Agric Res 48:453-465
38. Schnurbusch T, Paillard S, Fossati D, Messmer M, Schachermayr G, Winzeler M, Keller B (2003) Detection of QTLs for Stagonospora glume blotch resistance in Swiss winter wheat. Theor Appl Genet 107:1226-1234
39. Stuteville DL, Erwin DC (1990) Compendium of alfalfa diseases, 2 edn. APS Press, St Paul
40. Tanksley SD, Young ND, Paterson AH, Bonierbale MW (1989) RFLP mapping in plant breeding: new tools for an old science. Bio/Technology 7:257-264
41. 1 population. J Hered 87:167-170
42. Thoquet P, Gherardi M, Journet EP, Kereszt A, Ane JM, Prosperi JM, Huguet T (2002) The molecular genetic linkage map of the model legume Medicago truncatula: an essential tool for comparative legume genomics and the isolation of agronomically important genes. BMC Plant Biol 2:1
43. Tivoli B, Baranger A, Avila CM, Banninza S, Barbetti M, Chen W, Davidson J, Lindeck K, Kharrat M, Rubiales D, Sadiki M, Sillero JC, Sweetingham M, Muehlbauer FJ (2006) Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi on grain legumes. Euphytica 147:223-253
44. Vales MI, Schön CC, Capettini F, Chen XM, Corey AE, Mather DE, Mundt CC, Richardson KL, Sandoval-Islas JS, Utz HF, Hayes PM (2005) Effect of population size on the estimation of QTL: a test using resistance to barley stripe rust. Theor Appl Genet 111:1260-1270
45. Vos P, Rogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23:4407-4414
46. Wu KK, Burnquist W, Sorrells ME, Tew TL, Moore PH, Tanksley SD (1992) The detection and estimation of linkage in polyploids using single-dose restriction fragments. Theor Appl Genet 83:294-300