메뉴 건너뛰기




Volumn 73, Issue 9, 2007, Pages 2799-2805

Diversity and metabolism of marine bacteria cultivated on dissolved DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ECOSYSTEMS; METABOLISM; MICROORGANISMS; MOLECULAR WEIGHT; NUTRIENTS;

EID: 34248147931     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02674-06     Document Type: Article
Times cited : (50)

References (42)
  • 1
    • 20444418677 scopus 로고    scopus 로고
    • Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments
    • Allison, S. D. 2005. Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments. Ecol. Lett. 8:626-635.
    • (2005) Ecol. Lett , vol.8 , pp. 626-635
    • Allison, S.D.1
  • 2
    • 9644295656 scopus 로고    scopus 로고
    • Speed bumps and barricades in the carbon cycle: Substrate structural effects on carbon cycling
    • Arnosti, C. 2004. Speed bumps and barricades in the carbon cycle: substrate structural effects on carbon cycling. Mar. Chem. 92:263-273.
    • (2004) Mar. Chem , vol.92 , pp. 263-273
    • Arnosti, C.1
  • 3
    • 25144475996 scopus 로고    scopus 로고
    • Marine microorganisms and global nutrient cycles
    • Arrigo, K. R. 2005. Marine microorganisms and global nutrient cycles. Nature 437:349-355.
    • (2005) Nature , vol.437 , pp. 349-355
    • Arrigo, K.R.1
  • 4
    • 1542513560 scopus 로고    scopus 로고
    • Microbes, molecules, and marine ecosystems
    • Azam, F., and A. Z. Worden. 2004. Microbes, molecules, and marine ecosystems. Science 303:1622-1624.
    • (2004) Science , vol.303 , pp. 1622-1624
    • Azam, F.1    Worden, A.Z.2
  • 5
    • 3042596928 scopus 로고    scopus 로고
    • DNA uptake during bacterial transformation
    • Chen, I., and D. Dubnau. 2004. DNA uptake during bacterial transformation. Nat. Rev. Microbiol. 2:241-249.
    • (2004) Nat. Rev. Microbiol , vol.2 , pp. 241-249
    • Chen, I.1    Dubnau, D.2
  • 6
    • 0034068899 scopus 로고    scopus 로고
    • Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
    • Cottrell, M. T., and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66:1692-1697.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1692-1697
    • Cottrell, M.T.1    Kirchman, D.L.2
  • 7
    • 0035807131 scopus 로고    scopus 로고
    • Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon
    • Covert, J. S., and M. A. Moran. 2001. Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon. Aquat. Microb. Ecol. 25:127-139.
    • (2001) Aquat. Microb. Ecol , vol.25 , pp. 127-139
    • Covert, J.S.1    Moran, M.A.2
  • 8
    • 0002790939 scopus 로고
    • Distribution and molecular-weight of dissolved DNA in subtropical estuarine and oceanic environments
    • Deflaun, M. F., J. H. Paul, and W. H. Jeffrey. 1987. Distribution and molecular-weight of dissolved DNA in subtropical estuarine and oceanic environments. Mar. Ecol. Prog. Ser. 38:65-73.
    • (1987) Mar. Ecol. Prog. Ser , vol.38 , pp. 65-73
    • Deflaun, M.F.1    Paul, J.H.2    Jeffrey, W.H.3
  • 9
    • 0027320239 scopus 로고
    • Screening of halophilic bacteria and Alteromonas species for organophosphorus hydrolyzing enzyme activity
    • Defrank, J. J., W. T. Beaudry, T. C. Cheng, S. P. Harvey, A. N. Stroup, and L. L. Szafraniec. 1993. Screening of halophilic bacteria and Alteromonas species for organophosphorus hydrolyzing enzyme activity. Chem.-Biol. Interact. 87:141-148.
    • (1993) Chem.-Biol. Interact , vol.87 , pp. 141-148
    • Defrank, J.J.1    Beaudry, W.T.2    Cheng, T.C.3    Harvey, S.P.4    Stroup, A.N.5    Szafraniec, L.L.6
  • 10
    • 3242796796 scopus 로고    scopus 로고
    • Degradation and turnover of extracellular DNA in marine sediments: Ecological and methodological considerations
    • Dell'Anno, A., and C. Corinaldesi. 2004. Degradation and turnover of extracellular DNA in marine sediments: ecological and methodological considerations. Appl. Environ. Microbiol. 70:4384-4386.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 4384-4386
    • Dell'Anno, A.1    Corinaldesi, C.2
  • 11
    • 25844519572 scopus 로고    scopus 로고
    • Extracellular DNA plays a key role in deep-sea ecosystem functioning
    • Dell'Anno, A., and R. Danovaro. 2005. Extracellular DNA plays a key role in deep-sea ecosystem functioning. Science 309:2179.
    • (2005) Science , vol.309 , pp. 2179
    • Dell'Anno, A.1    Danovaro, R.2
  • 12
    • 0037264483 scopus 로고    scopus 로고
    • Single-strand-specific nucleases
    • Desai, N. A., and V. Shankar. 2003. Single-strand-specific nucleases. FEMS Microbiol. Rev. 26:457-491.
    • (2003) FEMS Microbiol. Rev , vol.26 , pp. 457-491
    • Desai, N.A.1    Shankar, V.2
  • 13
    • 0032697140 scopus 로고    scopus 로고
    • DNA uptake in bacteria
    • Dubnau, D. 1999. DNA uptake in bacteria. Annu. Rev. Microbiol. 53:217- 244.
    • (1999) Annu. Rev. Microbiol , vol.53 , pp. 217-244
    • Dubnau, D.1
  • 14
    • 0035977793 scopus 로고    scopus 로고
    • Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
    • Fandino, L. B., L. Riemann, G. F. Steward, R. A. Long, and F. Azam. 2000. Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat. Microb. Ecol. 23: 119-130.
    • (2000) Aquat. Microb. Ecol , vol.23 , pp. 119-130
    • Fandino, L.B.1    Riemann, L.2    Steward, G.F.3    Long, R.A.4    Azam, F.5
  • 15
    • 0035685198 scopus 로고    scopus 로고
    • DNA as a nutrient: Novel role for bacterial competence gene homologs
    • Finkel, S. E., and R. Kolter. 2001. DNA as a nutrient: novel role for bacterial competence gene homologs. J. Bacteriol. 183:6288-6293.
    • (2001) J. Bacteriol , vol.183 , pp. 6288-6293
    • Finkel, S.E.1    Kolter, R.2
  • 16
    • 0000262823 scopus 로고    scopus 로고
    • Evolution, diversity, and molecular ecology of marine prokaryotes
    • D. L. Kirchman ed, Wiley-Liss, New York, NY
    • Giovannoni, S. J., and M. S. Rappé. 2000. Evolution, diversity, and molecular ecology of marine prokaryotes, p. 47-84. In D. L. Kirchman (ed.), Microbial ecology of the oceans. Wiley-Liss, New York, NY.
    • (2000) Microbial ecology of the oceans , pp. 47-84
    • Giovannoni, S.J.1    Rappé, M.S.2
  • 17
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
    • Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 18
    • 0027799396 scopus 로고
    • Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria
    • Jørgensen, N. O. G., N. Kroer, R. B. Coffin, X. H. Yang, and C. Lee. 1993. Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria. Mar. Ecol. Prog. Ser. 98:135-148.
    • (1993) Mar. Ecol. Prog. Ser , vol.98 , pp. 135-148
    • Jørgensen, N.O.G.1    Kroer, N.2    Coffin, R.B.3    Yang, X.H.4    Lee, C.5
  • 19
    • 84986815830 scopus 로고
    • The measurement and distribution of dissolved nucleic acids in aquatic environments
    • Karl, D. M., and M. D. Bailiff. 1989. The measurement and distribution of dissolved nucleic acids in aquatic environments. Limnol. Oceanogr. 34:543-558.
    • (1989) Limnol. Oceanogr , vol.34 , pp. 543-558
    • Karl, D.M.1    Bailiff, M.D.2
  • 20
    • 0032436254 scopus 로고    scopus 로고
    • Dissolved DNA produced through a prey-predator relationship in a species-defined aquatic microcosm
    • Kawabata, Z., N. Ishii, M. Nasu, and M. G. Min. 1998. Dissolved DNA produced through a prey-predator relationship in a species-defined aquatic microcosm. Hydrobiologia 385:71-76.
    • (1998) Hydrobiologia , vol.385 , pp. 71-76
    • Kawabata, Z.1    Ishii, N.2    Nasu, M.3    Min, M.G.4
  • 21
    • 0742302381 scopus 로고    scopus 로고
    • Trade-offs in community ecology: Linking spatial scales and species coexistence
    • Kneitel, J. M., and J. M. Chase. 2004. Trade-offs in community ecology: linking spatial scales and species coexistence. Ecol. Lett. 7:69-80.
    • (2004) Ecol. Lett , vol.7 , pp. 69-80
    • Kneitel, J.M.1    Chase, J.M.2
  • 22
    • 0028164329 scopus 로고
    • Utilization of dissolved nitrogen by heterotrophic bacterioplankton: A comparison of three ecosystems
    • Kroer, N., N. O. G. Jørgensen, and R. B. Coffin. 1994. Utilization of dissolved nitrogen by heterotrophic bacterioplankton: a comparison of three ecosystems. Appl. Environ. Microbiol. 60:4116-4123.
    • (1994) Appl. Environ. Microbiol , vol.60 , pp. 4116-4123
    • Kroer, N.1    Jørgensen, N.O.G.2    Coffin, R.B.3
  • 23
    • 21244436498 scopus 로고    scopus 로고
    • Source and supply of terrestrial organic matter affects aquatic microbial metabolism
    • Lennon, J. T., and L. E. Pfaff. 2005. Source and supply of terrestrial organic matter affects aquatic microbial metabolism. Aquat. Microb. Ecol. 39:107-119.
    • (2005) Aquat. Microb. Ecol , vol.39 , pp. 107-119
    • Lennon, J.T.1    Pfaff, L.E.2
  • 24
    • 0028136885 scopus 로고
    • Bacterial gene transfer by natural genetic transformation in the environment
    • Lorenz, M. G., and W. Wackernagel. 1994. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58:563-602.
    • (1994) Microbiol. Rev , vol.58 , pp. 563-602
    • Lorenz, M.G.1    Wackernagel, W.2
  • 25
    • 2542523843 scopus 로고    scopus 로고
    • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K. H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
    • Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K. H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
  • 26
    • 34248199637 scopus 로고
    • Microbial ecology concerning to the degradation of nucleic acid in the marine environment
    • Maeda, M. 1980. Microbial ecology concerning to the degradation of nucleic acid in the marine environment. J. Oceangr. Soc. Jpn. 36:167-176.
    • (1980) J. Oceangr. Soc. Jpn , vol.36 , pp. 167-176
    • Maeda, M.1
  • 27
    • 4243112704 scopus 로고    scopus 로고
    • Use of the SYBR Green I fluorescent dye and a centrifugal filter device for rapid determination of dissolved DNA concentration in fresh water
    • Matsui, K., N. Ishii, M. Honjo, and Z. Kawabata. 2004. Use of the SYBR Green I fluorescent dye and a centrifugal filter device for rapid determination of dissolved DNA concentration in fresh water. Aquat. Microb. Ecol. 36:99-105.
    • (2004) Aquat. Microb. Ecol , vol.36 , pp. 99-105
    • Matsui, K.1    Ishii, N.2    Honjo, M.3    Kawabata, Z.4
  • 28
    • 17444406353 scopus 로고    scopus 로고
    • Roles of four chitinases (ChiA, ChiB, ChiC, and ChiD) in the chitin degradation system of marine bacterium Alteromonas sp. strain 0-7
    • Orikoshi, H., S. Nakayama, K. Miyamoto, C. Hanato, M. Yasuda, Y. Inamori, and H. Tsujibo. 2005. Roles of four chitinases (ChiA, ChiB, ChiC, and ChiD) in the chitin degradation system of marine bacterium Alteromonas sp. strain 0-7. Appl. Environ. Microbiol. 71:1811-1815.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1811-1815
    • Orikoshi, H.1    Nakayama, S.2    Miyamoto, K.3    Hanato, C.4    Yasuda, M.5    Inamori, Y.6    Tsujibo, H.7
  • 29
    • 0006122886 scopus 로고
    • Mechanisms of DNA utilization by estuarine microbial populations
    • Paul, J. H., M. F. Deflaun, and W. H. Jeffrey. 1988. Mechanisms of DNA utilization by estuarine microbial populations. Appl. Environ. Microbiol. 54:1682-1688.
    • (1988) Appl. Environ. Microbiol , vol.54 , pp. 1682-1688
    • Paul, J.H.1    Deflaun, M.F.2    Jeffrey, W.H.3
  • 30
  • 31
    • 0023121884 scopus 로고
    • Dynamics of extracellular DNA in the marine environment
    • Paul, J. H., W. H. Jeffrey, and M. F. Deflaun. 1987. Dynamics of extracellular DNA in the marine environment. Appl. Environ. Microbiol. 53:170-179.
    • (1987) Appl. Environ. Microbiol , vol.53 , pp. 170-179
    • Paul, J.H.1    Jeffrey, W.H.2    Deflaun, M.F.3
  • 32
    • 0033058034 scopus 로고    scopus 로고
    • Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation
    • Pinhassi, J., F. Azam, J. Hemphala, R. A. Long, J. Martinez, U. Zweifel, and A. Hagström. 1999. Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat. Microb. Ecol. 17:13-26.
    • (1999) Aquat. Microb. Ecol , vol.17 , pp. 13-26
    • Pinhassi, J.1    Azam, F.2    Hemphala, J.3    Long, R.A.4    Martinez, J.5    Zweifel, U.6    Hagström, A.7
  • 33
    • 2942627192 scopus 로고    scopus 로고
    • Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria
    • Pradella, S., M. Allgaier, C. Hoch, O. Pauker, E. Stackebrandt, and I. Wagner-Döbler. 2004. Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria. Appl. Environ. Microbiol. 70:3360-3369.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 3360-3369
    • Pradella, S.1    Allgaier, M.2    Hoch, C.3    Pauker, O.4    Stackebrandt, E.5    Wagner-Döbler, I.6
  • 34
    • 0035430787 scopus 로고    scopus 로고
    • Do bacteria have sex?
    • Redfield, R. J. 2001. Do bacteria have sex? Nat. Rev. Genet. 2:634-639.
    • (2001) Nat. Rev. Genet , vol.2 , pp. 634-639
    • Redfield, R.J.1
  • 35
    • 0027383458 scopus 로고
    • Genes for breakfast: The have-your-cake-and-eat-it-too of bacterial transformation
    • Redfield, R. J. 1993. Genes for breakfast: the have-your-cake-and-eat-it-too of bacterial transformation. J. Hered. 84:400-404.
    • (1993) J. Hered , vol.84 , pp. 400-404
    • Redfield, R.J.1
  • 36
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 37
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: A test to compare gene libraries
    • Schloss, P. D., B. R. Larget, and J. Handelsman. 2004. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl. Environ. Microbiol. 70:5485-5492.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 38
    • 0034737223 scopus 로고    scopus 로고
    • Concentration and susceptibility of dissolved DNA for enzyme degradation in lake - some methodological remarks
    • Siuda, W., and R. J. Chódst. 2000. Concentration and susceptibility of dissolved DNA for enzyme degradation in lake - some methodological remarks. Aquat. Microb. Ecol. 21:195-201.
    • (2000) Aquat. Microb. Ecol , vol.21 , pp. 195-201
    • Siuda, W.1    Chódst, R.J.2
  • 40
    • 0026331041 scopus 로고
    • Molecular architecture and electrostatic properties of a bacterial porin
    • Weiss, M. S., U. Abele, J. Weckesser, W. Welte, E. Schiltz, and G. E. Schulz. 1991. Molecular architecture and electrostatic properties of a bacterial porin. Science 254:1627-1630.
    • (1991) Science , vol.254 , pp. 1627-1630
    • Weiss, M.S.1    Abele, U.2    Weckesser, J.3    Welte, W.4    Schiltz, E.5    Schulz, G.E.6
  • 41
    • 0034053843 scopus 로고    scopus 로고
    • Virioplankton: Viruses in aquatic ecosystems
    • Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114.
    • (2000) Microbiol. Mol. Biol. Rev , vol.64 , pp. 69-114
    • Wommack, K.E.1    Colwell, R.R.2
  • 42
    • 0032517955 scopus 로고    scopus 로고
    • Activity measurement for deoxyribonucleases I and II with picogram sensitivity based on DNA/SYBR green I fluorescence
    • Yasuda, T., H. Takeshita, E. Nakazato, T. Nakajima, O. Hosomi, Y. Nakashima, and K. Kishi. 1998. Activity measurement for deoxyribonucleases I and II with picogram sensitivity based on DNA/SYBR green I fluorescence. Anal. Biochem. 255:274-276.
    • (1998) Anal. Biochem , vol.255 , pp. 274-276
    • Yasuda, T.1    Takeshita, H.2    Nakazato, E.3    Nakajima, T.4    Hosomi, O.5    Nakashima, Y.6    Kishi, K.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.