-
1
-
-
20444418677
-
Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments
-
Allison, S. D. 2005. Cheaters, diffusion and nutrients constrain decomposition by microbial enzymes in spatially structured environments. Ecol. Lett. 8:626-635.
-
(2005)
Ecol. Lett
, vol.8
, pp. 626-635
-
-
Allison, S.D.1
-
2
-
-
9644295656
-
Speed bumps and barricades in the carbon cycle: Substrate structural effects on carbon cycling
-
Arnosti, C. 2004. Speed bumps and barricades in the carbon cycle: substrate structural effects on carbon cycling. Mar. Chem. 92:263-273.
-
(2004)
Mar. Chem
, vol.92
, pp. 263-273
-
-
Arnosti, C.1
-
3
-
-
25144475996
-
Marine microorganisms and global nutrient cycles
-
Arrigo, K. R. 2005. Marine microorganisms and global nutrient cycles. Nature 437:349-355.
-
(2005)
Nature
, vol.437
, pp. 349-355
-
-
Arrigo, K.R.1
-
4
-
-
1542513560
-
Microbes, molecules, and marine ecosystems
-
Azam, F., and A. Z. Worden. 2004. Microbes, molecules, and marine ecosystems. Science 303:1622-1624.
-
(2004)
Science
, vol.303
, pp. 1622-1624
-
-
Azam, F.1
Worden, A.Z.2
-
5
-
-
3042596928
-
DNA uptake during bacterial transformation
-
Chen, I., and D. Dubnau. 2004. DNA uptake during bacterial transformation. Nat. Rev. Microbiol. 2:241-249.
-
(2004)
Nat. Rev. Microbiol
, vol.2
, pp. 241-249
-
-
Chen, I.1
Dubnau, D.2
-
6
-
-
0034068899
-
Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter
-
Cottrell, M. T., and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66:1692-1697.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1692-1697
-
-
Cottrell, M.T.1
Kirchman, D.L.2
-
7
-
-
0035807131
-
Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon
-
Covert, J. S., and M. A. Moran. 2001. Molecular characterization of estuarine bacterial communities that use high- and low-molecular weight fractions of dissolved organic carbon. Aquat. Microb. Ecol. 25:127-139.
-
(2001)
Aquat. Microb. Ecol
, vol.25
, pp. 127-139
-
-
Covert, J.S.1
Moran, M.A.2
-
8
-
-
0002790939
-
Distribution and molecular-weight of dissolved DNA in subtropical estuarine and oceanic environments
-
Deflaun, M. F., J. H. Paul, and W. H. Jeffrey. 1987. Distribution and molecular-weight of dissolved DNA in subtropical estuarine and oceanic environments. Mar. Ecol. Prog. Ser. 38:65-73.
-
(1987)
Mar. Ecol. Prog. Ser
, vol.38
, pp. 65-73
-
-
Deflaun, M.F.1
Paul, J.H.2
Jeffrey, W.H.3
-
9
-
-
0027320239
-
Screening of halophilic bacteria and Alteromonas species for organophosphorus hydrolyzing enzyme activity
-
Defrank, J. J., W. T. Beaudry, T. C. Cheng, S. P. Harvey, A. N. Stroup, and L. L. Szafraniec. 1993. Screening of halophilic bacteria and Alteromonas species for organophosphorus hydrolyzing enzyme activity. Chem.-Biol. Interact. 87:141-148.
-
(1993)
Chem.-Biol. Interact
, vol.87
, pp. 141-148
-
-
Defrank, J.J.1
Beaudry, W.T.2
Cheng, T.C.3
Harvey, S.P.4
Stroup, A.N.5
Szafraniec, L.L.6
-
10
-
-
3242796796
-
Degradation and turnover of extracellular DNA in marine sediments: Ecological and methodological considerations
-
Dell'Anno, A., and C. Corinaldesi. 2004. Degradation and turnover of extracellular DNA in marine sediments: ecological and methodological considerations. Appl. Environ. Microbiol. 70:4384-4386.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 4384-4386
-
-
Dell'Anno, A.1
Corinaldesi, C.2
-
11
-
-
25844519572
-
Extracellular DNA plays a key role in deep-sea ecosystem functioning
-
Dell'Anno, A., and R. Danovaro. 2005. Extracellular DNA plays a key role in deep-sea ecosystem functioning. Science 309:2179.
-
(2005)
Science
, vol.309
, pp. 2179
-
-
Dell'Anno, A.1
Danovaro, R.2
-
12
-
-
0037264483
-
Single-strand-specific nucleases
-
Desai, N. A., and V. Shankar. 2003. Single-strand-specific nucleases. FEMS Microbiol. Rev. 26:457-491.
-
(2003)
FEMS Microbiol. Rev
, vol.26
, pp. 457-491
-
-
Desai, N.A.1
Shankar, V.2
-
13
-
-
0032697140
-
DNA uptake in bacteria
-
Dubnau, D. 1999. DNA uptake in bacteria. Annu. Rev. Microbiol. 53:217- 244.
-
(1999)
Annu. Rev. Microbiol
, vol.53
, pp. 217-244
-
-
Dubnau, D.1
-
14
-
-
0035977793
-
Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing
-
Fandino, L. B., L. Riemann, G. F. Steward, R. A. Long, and F. Azam. 2000. Variations in bacterial community structure during a dinoflagellate bloom analyzed by DGGE and 16S rDNA sequencing. Aquat. Microb. Ecol. 23: 119-130.
-
(2000)
Aquat. Microb. Ecol
, vol.23
, pp. 119-130
-
-
Fandino, L.B.1
Riemann, L.2
Steward, G.F.3
Long, R.A.4
Azam, F.5
-
15
-
-
0035685198
-
DNA as a nutrient: Novel role for bacterial competence gene homologs
-
Finkel, S. E., and R. Kolter. 2001. DNA as a nutrient: novel role for bacterial competence gene homologs. J. Bacteriol. 183:6288-6293.
-
(2001)
J. Bacteriol
, vol.183
, pp. 6288-6293
-
-
Finkel, S.E.1
Kolter, R.2
-
16
-
-
0000262823
-
Evolution, diversity, and molecular ecology of marine prokaryotes
-
D. L. Kirchman ed, Wiley-Liss, New York, NY
-
Giovannoni, S. J., and M. S. Rappé. 2000. Evolution, diversity, and molecular ecology of marine prokaryotes, p. 47-84. In D. L. Kirchman (ed.), Microbial ecology of the oceans. Wiley-Liss, New York, NY.
-
(2000)
Microbial ecology of the oceans
, pp. 47-84
-
-
Giovannoni, S.J.1
Rappé, M.S.2
-
17
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
18
-
-
0027799396
-
Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria
-
Jørgensen, N. O. G., N. Kroer, R. B. Coffin, X. H. Yang, and C. Lee. 1993. Dissolved free amino acids, combined amino acids, and DNA as sources of carbon and nitrogen to marine bacteria. Mar. Ecol. Prog. Ser. 98:135-148.
-
(1993)
Mar. Ecol. Prog. Ser
, vol.98
, pp. 135-148
-
-
Jørgensen, N.O.G.1
Kroer, N.2
Coffin, R.B.3
Yang, X.H.4
Lee, C.5
-
19
-
-
84986815830
-
The measurement and distribution of dissolved nucleic acids in aquatic environments
-
Karl, D. M., and M. D. Bailiff. 1989. The measurement and distribution of dissolved nucleic acids in aquatic environments. Limnol. Oceanogr. 34:543-558.
-
(1989)
Limnol. Oceanogr
, vol.34
, pp. 543-558
-
-
Karl, D.M.1
Bailiff, M.D.2
-
20
-
-
0032436254
-
Dissolved DNA produced through a prey-predator relationship in a species-defined aquatic microcosm
-
Kawabata, Z., N. Ishii, M. Nasu, and M. G. Min. 1998. Dissolved DNA produced through a prey-predator relationship in a species-defined aquatic microcosm. Hydrobiologia 385:71-76.
-
(1998)
Hydrobiologia
, vol.385
, pp. 71-76
-
-
Kawabata, Z.1
Ishii, N.2
Nasu, M.3
Min, M.G.4
-
21
-
-
0742302381
-
Trade-offs in community ecology: Linking spatial scales and species coexistence
-
Kneitel, J. M., and J. M. Chase. 2004. Trade-offs in community ecology: linking spatial scales and species coexistence. Ecol. Lett. 7:69-80.
-
(2004)
Ecol. Lett
, vol.7
, pp. 69-80
-
-
Kneitel, J.M.1
Chase, J.M.2
-
22
-
-
0028164329
-
Utilization of dissolved nitrogen by heterotrophic bacterioplankton: A comparison of three ecosystems
-
Kroer, N., N. O. G. Jørgensen, and R. B. Coffin. 1994. Utilization of dissolved nitrogen by heterotrophic bacterioplankton: a comparison of three ecosystems. Appl. Environ. Microbiol. 60:4116-4123.
-
(1994)
Appl. Environ. Microbiol
, vol.60
, pp. 4116-4123
-
-
Kroer, N.1
Jørgensen, N.O.G.2
Coffin, R.B.3
-
23
-
-
21244436498
-
Source and supply of terrestrial organic matter affects aquatic microbial metabolism
-
Lennon, J. T., and L. E. Pfaff. 2005. Source and supply of terrestrial organic matter affects aquatic microbial metabolism. Aquat. Microb. Ecol. 39:107-119.
-
(2005)
Aquat. Microb. Ecol
, vol.39
, pp. 107-119
-
-
Lennon, J.T.1
Pfaff, L.E.2
-
24
-
-
0028136885
-
Bacterial gene transfer by natural genetic transformation in the environment
-
Lorenz, M. G., and W. Wackernagel. 1994. Bacterial gene transfer by natural genetic transformation in the environment. Microbiol. Rev. 58:563-602.
-
(1994)
Microbiol. Rev
, vol.58
, pp. 563-602
-
-
Lorenz, M.G.1
Wackernagel, W.2
-
25
-
-
2542523843
-
-
Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K. H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
Ludwig, W., O. Strunk, R. Westram, L. Richter, H. Meier, Yadhukumar, A. Buchner, T. Lai, S. Steppi, G. Jobb, W. Forster, I. Brettske, S. Gerber, A. W. Ginhart, O. Gross, S. Grumann, S. Hermann, R. Jost, A. Konig, T. Liss, R. Lussmann, M. May, B. Nonhoff, B. Reichel, R. Strehlow, A. Stamatakis, N. Stuckmann, A. Vilbig, M. Lenke, T. Ludwig, A. Bode, and K. H. Schleifer. 2004. ARB: a software environment for sequence data. Nucleic Acids Res. 32:1363-1371.
-
-
-
-
26
-
-
34248199637
-
Microbial ecology concerning to the degradation of nucleic acid in the marine environment
-
Maeda, M. 1980. Microbial ecology concerning to the degradation of nucleic acid in the marine environment. J. Oceangr. Soc. Jpn. 36:167-176.
-
(1980)
J. Oceangr. Soc. Jpn
, vol.36
, pp. 167-176
-
-
Maeda, M.1
-
27
-
-
4243112704
-
Use of the SYBR Green I fluorescent dye and a centrifugal filter device for rapid determination of dissolved DNA concentration in fresh water
-
Matsui, K., N. Ishii, M. Honjo, and Z. Kawabata. 2004. Use of the SYBR Green I fluorescent dye and a centrifugal filter device for rapid determination of dissolved DNA concentration in fresh water. Aquat. Microb. Ecol. 36:99-105.
-
(2004)
Aquat. Microb. Ecol
, vol.36
, pp. 99-105
-
-
Matsui, K.1
Ishii, N.2
Honjo, M.3
Kawabata, Z.4
-
28
-
-
17444406353
-
Roles of four chitinases (ChiA, ChiB, ChiC, and ChiD) in the chitin degradation system of marine bacterium Alteromonas sp. strain 0-7
-
Orikoshi, H., S. Nakayama, K. Miyamoto, C. Hanato, M. Yasuda, Y. Inamori, and H. Tsujibo. 2005. Roles of four chitinases (ChiA, ChiB, ChiC, and ChiD) in the chitin degradation system of marine bacterium Alteromonas sp. strain 0-7. Appl. Environ. Microbiol. 71:1811-1815.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 1811-1815
-
-
Orikoshi, H.1
Nakayama, S.2
Miyamoto, K.3
Hanato, C.4
Yasuda, M.5
Inamori, Y.6
Tsujibo, H.7
-
29
-
-
0006122886
-
Mechanisms of DNA utilization by estuarine microbial populations
-
Paul, J. H., M. F. Deflaun, and W. H. Jeffrey. 1988. Mechanisms of DNA utilization by estuarine microbial populations. Appl. Environ. Microbiol. 54:1682-1688.
-
(1988)
Appl. Environ. Microbiol
, vol.54
, pp. 1682-1688
-
-
Paul, J.H.1
Deflaun, M.F.2
Jeffrey, W.H.3
-
30
-
-
0000736677
-
Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest
-
Paul, J. H., W. H. Jeffrey, A. W. David, M. F. Deflaun, and L. H. Cazares. 1989. Turnover of extracellular DNA in eutrophic and oligotrophic freshwater environments of southwest Florida. Appl. Environ. Microbiol. 55: 1823-1828.
-
(1989)
Florida. Appl. Environ. Microbiol
, vol.55
, pp. 1823-1828
-
-
Paul, J.H.1
Jeffrey, W.H.2
David, A.W.3
Deflaun, M.F.4
Cazares, L.H.5
-
32
-
-
0033058034
-
Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation
-
Pinhassi, J., F. Azam, J. Hemphala, R. A. Long, J. Martinez, U. Zweifel, and A. Hagström. 1999. Coupling between bacterioplankton species composition, population dynamics, and organic matter degradation. Aquat. Microb. Ecol. 17:13-26.
-
(1999)
Aquat. Microb. Ecol
, vol.17
, pp. 13-26
-
-
Pinhassi, J.1
Azam, F.2
Hemphala, J.3
Long, R.A.4
Martinez, J.5
Zweifel, U.6
Hagström, A.7
-
33
-
-
2942627192
-
Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria
-
Pradella, S., M. Allgaier, C. Hoch, O. Pauker, E. Stackebrandt, and I. Wagner-Döbler. 2004. Genome organization and localization of the pufLM genes of the photosynthesis reaction center in phylogenetically diverse marine Alphaproteobacteria. Appl. Environ. Microbiol. 70:3360-3369.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 3360-3369
-
-
Pradella, S.1
Allgaier, M.2
Hoch, C.3
Pauker, O.4
Stackebrandt, E.5
Wagner-Döbler, I.6
-
34
-
-
0035430787
-
Do bacteria have sex?
-
Redfield, R. J. 2001. Do bacteria have sex? Nat. Rev. Genet. 2:634-639.
-
(2001)
Nat. Rev. Genet
, vol.2
, pp. 634-639
-
-
Redfield, R.J.1
-
35
-
-
0027383458
-
Genes for breakfast: The have-your-cake-and-eat-it-too of bacterial transformation
-
Redfield, R. J. 1993. Genes for breakfast: the have-your-cake-and-eat-it-too of bacterial transformation. J. Hered. 84:400-404.
-
(1993)
J. Hered
, vol.84
, pp. 400-404
-
-
Redfield, R.J.1
-
36
-
-
15444362001
-
Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
-
Schloss, P. D., and J. Handelsman. 2005. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl. Environ. Microbiol. 71:1501-1506.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 1501-1506
-
-
Schloss, P.D.1
Handelsman, J.2
-
37
-
-
4644275463
-
Integration of microbial ecology and statistics: A test to compare gene libraries
-
Schloss, P. D., B. R. Larget, and J. Handelsman. 2004. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl. Environ. Microbiol. 70:5485-5492.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 5485-5492
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
38
-
-
0034737223
-
Concentration and susceptibility of dissolved DNA for enzyme degradation in lake - some methodological remarks
-
Siuda, W., and R. J. Chódst. 2000. Concentration and susceptibility of dissolved DNA for enzyme degradation in lake - some methodological remarks. Aquat. Microb. Ecol. 21:195-201.
-
(2000)
Aquat. Microb. Ecol
, vol.21
, pp. 195-201
-
-
Siuda, W.1
Chódst, R.J.2
-
39
-
-
4143084055
-
New strategies for cultivation and detection of previously uncultured microbes
-
Stevenson, B. S., S. A. Eichorst, J. T. Wertz, T. M. Schmidt, and J. A. Breznak. 2004. New strategies for cultivation and detection of previously uncultured microbes. Appl. Environ. Microbiol. 70:4748-4755.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 4748-4755
-
-
Stevenson, B.S.1
Eichorst, S.A.2
Wertz, J.T.3
Schmidt, T.M.4
Breznak, J.A.5
-
40
-
-
0026331041
-
Molecular architecture and electrostatic properties of a bacterial porin
-
Weiss, M. S., U. Abele, J. Weckesser, W. Welte, E. Schiltz, and G. E. Schulz. 1991. Molecular architecture and electrostatic properties of a bacterial porin. Science 254:1627-1630.
-
(1991)
Science
, vol.254
, pp. 1627-1630
-
-
Weiss, M.S.1
Abele, U.2
Weckesser, J.3
Welte, W.4
Schiltz, E.5
Schulz, G.E.6
-
41
-
-
0034053843
-
Virioplankton: Viruses in aquatic ecosystems
-
Wommack, K. E., and R. R. Colwell. 2000. Virioplankton: viruses in aquatic ecosystems. Microbiol. Mol. Biol. Rev. 64:69-114.
-
(2000)
Microbiol. Mol. Biol. Rev
, vol.64
, pp. 69-114
-
-
Wommack, K.E.1
Colwell, R.R.2
-
42
-
-
0032517955
-
Activity measurement for deoxyribonucleases I and II with picogram sensitivity based on DNA/SYBR green I fluorescence
-
Yasuda, T., H. Takeshita, E. Nakazato, T. Nakajima, O. Hosomi, Y. Nakashima, and K. Kishi. 1998. Activity measurement for deoxyribonucleases I and II with picogram sensitivity based on DNA/SYBR green I fluorescence. Anal. Biochem. 255:274-276.
-
(1998)
Anal. Biochem
, vol.255
, pp. 274-276
-
-
Yasuda, T.1
Takeshita, H.2
Nakazato, E.3
Nakajima, T.4
Hosomi, O.5
Nakashima, Y.6
Kishi, K.7
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