메뉴 건너뛰기




Volumn 80, Issue 2, 2007, Pages 353-367

Specific identification of western Atlantic Ocean scombrids using mitochondrial DNA cytochrome C oxidase subunit I (COI) gene region sequences

Author keywords

[No Author keywords available]

Indexed keywords

CHEMOTAXONOMY; CYTOCHROME; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC MARKER; IDENTIFICATION METHOD; MITOCHONDRIAL DNA; PERCIFORM;

EID: 34247891615     PISSN: 00074977     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (48)

References (47)
  • 1
    • 0032433463 scopus 로고    scopus 로고
    • Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations
    • Alvarado Bremer, J. R., B. Stequert, N. W. Robertson, and B. Ely. 1998. Genetic evidence for inter-oceanic subdivision of bigeye tuna (Thunnus obesus) populations. Mar. Biol. 132: 547-557.
    • (1998) Mar. Biol , vol.132 , pp. 547-557
    • Alvarado Bremer, J.R.1    Stequert, B.2    Robertson, N.W.3    Ely, B.4
  • 3
    • 0033516985 scopus 로고    scopus 로고
    • Phylogenetic systematics of the Scomberomorus regalis (Teleostei: Scombridae) species group: molecules, morphology and biogeography of Spanish mackerels
    • Banford, H. M., E. Bermingham, B. B. Collette, and S. S. McCafferty. 1999. Phylogenetic systematics of the Scomberomorus regalis (Teleostei: Scombridae) species group: molecules, morphology and biogeography of Spanish mackerels. Copeia 1999: 596-613.
    • (1999) Copeia 1999 , pp. 596-613
    • Banford, H.M.1    Bermingham, E.2    Collette, B.B.3    McCafferty, S.S.4
  • 4
    • 0000442161 scopus 로고
    • Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes
    • Bartlett, S. E. and W. S. Davidson. 1991. Identification of Thunnus tuna species by the polymerase chain reaction and direct sequence analysis of their mitochondrial cytochrome b genes. Can. J. Fish. Aquat. Sci. 48: 309-317.
    • (1991) Can. J. Fish. Aquat. Sci , vol.48 , pp. 309-317
    • Bartlett, S.E.1    Davidson, W.S.2
  • 5
    • 14844321615 scopus 로고    scopus 로고
    • Universal primers and PCR of gut contents to study marine invertebrate diets
    • Blankenship, L. E. and A. A. Yayanos. 2005. Universal primers and PCR of gut contents to study marine invertebrate diets. Mol. Ecol. 14: 891-899.
    • (2005) Mol. Ecol , vol.14 , pp. 891-899
    • Blankenship, L.E.1    Yayanos, A.A.2
  • 6
    • 0002135777 scopus 로고
    • The mitochondrial genome of animals
    • R. J. MacIntyre, ed, Plenum Press, New York
    • Brown, W. M. 1985. The mitochondrial genome of animals. Pages 95-130 in R. J. MacIntyre, ed. Molecular Evolutionary Genetics. Plenum Press, New York.
    • (1985) Molecular Evolutionary Genetics , pp. 95-130
    • Brown, W.M.1
  • 7
    • 0033133559 scopus 로고    scopus 로고
    • Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR
    • Bucklin, A., M. Guarnieri, R. S. Hill, A. M. Bentley, and S. Kaartvedt. 1999. Taxonomic and systematic assessment of planktonic copepods using mitochondrial COI sequence variation and competitive, species-specific PCR. Hydrobiologia 401: 239-254.
    • (1999) Hydrobiologia , vol.401 , pp. 239-254
    • Bucklin, A.1    Guarnieri, M.2    Hill, R.S.3    Bentley, A.M.4    Kaartvedt, S.5
  • 8
    • 7044263257 scopus 로고    scopus 로고
    • Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea
    • Carlsson, J., J. R. McDowell, P. Diaz-Jaimes, J. E. L. Carlsson, S. B. Boles, J. R. Gold, and J. E. Graves. 2004. Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea. Mol. Ecol. 13: 3345-3356.
    • (2004) Mol. Ecol , vol.13 , pp. 3345-3356
    • Carlsson, J.1    McDowell, J.R.2    Diaz-Jaimes, P.3    Carlsson, J.E.L.4    Boles, S.B.5    Gold, J.R.6    Graves, J.E.7
  • 9
    • 0001123643 scopus 로고
    • Intra- and interspecific restriction fragment length polymorphism in mitochondrial genes of Thunnus tuna species
    • Chow, S. and S. Inoue. 1993. Intra- and interspecific restriction fragment length polymorphism in mitochondrial genes of Thunnus tuna species. Bull. Natl. Res. Inst. Fish. 30: 207-224.
    • (1993) Bull. Natl. Res. Inst. Fish , vol.30 , pp. 207-224
    • Chow, S.1    Inoue, S.2
  • 10
    • 0029589302 scopus 로고
    • Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes
    • - and H. Kishino. 1995. Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes. J. Mol. Evol. 41: 741-748.
    • (1995) J. Mol. Evol , vol.41 , pp. 741-748
    • Chow, S.1    Inoue, S.2    Kishino, H.3
  • 11
    • 0029431582 scopus 로고
    • Global population structure of albacore (Thunnus alalunga) inferred by RFLP analysis of the mitochondrial ATPase gene
    • - and H. Ushiama. 1995. Global population structure of albacore (Thunnus alalunga) inferred by RFLP analysis of the mitochondrial ATPase gene. Mar. Biol. 123: 39-45.
    • (1995) Mar. Biol , vol.123 , pp. 39-45
    • Chow, S.1    Inoue, S.2    Kishino, H.3    Ushiama, H.4
  • 12
    • 0034144343 scopus 로고    scopus 로고
    • Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa
    • -, H. Okamoto, N. Miyabe, K. Hiramatsu, and N. Barut. 2000. Genetic divergence between Atlantic and Indo-Pacific stocks of bigeye tuna (Thunnus obesus) and admixture around South Africa. Mol. Ecol. 9:221-227.
    • (2000) Mol. Ecol , vol.9 , pp. 221-227
    • Chow, S.1    Inoue, S.2    Kishino, H.3    Ushiama, H.4    Okamoto, H.5    Miyabe, N.6    Hiramatsu, K.7    Barut, N.8
  • 14
    • 34247884884 scopus 로고    scopus 로고
    • Collette, B. B. and C. E. Nauen. 1983. FAO species catalogue. 2: Scombrids of the world: an annotated and illustrated catalogue of tunas, mackerels, bonitos and related species known to date. FAO Fisheries Synopsis No. 125:137 p.
    • Collette, B. B. and C. E. Nauen. 1983. FAO species catalogue. Vol. 2: Scombrids of the world: an annotated and illustrated catalogue of tunas, mackerels, bonitos and related species known to date. FAO Fisheries Synopsis No. 125:137 p.
  • 15
    • 0028083947 scopus 로고
    • Morphometric and genetic identification of eggs of spring-spawning sciaenids in lower Chesapeake Bay
    • Daniel, L. B., III and J. E. Graves. 1994. Morphometric and genetic identification of eggs of spring-spawning sciaenids in lower Chesapeake Bay. Fish. Bull. 92: 254-261.
    • (1994) Fish. Bull , vol.92 , pp. 254-261
    • Daniel III, L.B.1    Graves, J.E.2
  • 16
    • 0030426499 scopus 로고    scopus 로고
    • Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes
    • Estoup, A., C. R. Largiader, E. Perrot, and D. Chourrout. 1996. Rapid one-tube DNA extraction for reliable PCR detection of fish polymorphic markers and transgenes. Mol. Mar. Biol. Biotech. 5: 295-298.
    • (1996) Mol. Mar. Biol. Biotech , vol.5 , pp. 295-298
    • Estoup, A.1    Largiader, C.R.2    Perrot, E.3    Chourrout, D.4
  • 17
    • 0028528103 scopus 로고
    • DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates
    • Folmer, O., M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotech. 3: 294-299.
    • (1994) Mol. Mar. Biol. Biotech , vol.3 , pp. 294-299
    • Folmer, O.1    Black, M.2    Hoeh, W.3    Lutz, R.4    Vrijenhoek, R.5
  • 18
    • 16344379864 scopus 로고    scopus 로고
    • Primaclade-a flexible tool to find conserved PCR primers across multiple species
    • Gadberry, M. D., S. T. Malcomber, A. N. Doust, and E. A. Kellogg. 2005. Primaclade-a flexible tool to find conserved PCR primers across multiple species. Bioinformatics 21:1263-1264.
    • (2005) Bioinformatics , vol.21 , pp. 1263-1264
    • Gadberry, M.D.1    Malcomber, S.T.2    Doust, A.N.3    Kellogg, E.A.4
  • 19
    • 33646588341 scopus 로고    scopus 로고
    • Gorokhova, E. 2006. Molecular identification of the invasive cladoceran Cercopagis pengoi (Cladocera: Onychopoda) in stomachs of predators. Limnol. Oceanogr. Methods 4:1-6.
    • Gorokhova, E. 2006. Molecular identification of the invasive cladoceran Cercopagis pengoi (Cladocera: Onychopoda) in stomachs of predators. Limnol. Oceanogr. Methods 4:1-6.
  • 20
    • 0001371487 scopus 로고
    • Electrophoretic identification of early juvenile yellowfin tuna, Thunnus albacares
    • Graves, J. E., M. A. Simovich, and K. M. Schaefer. 1988. Electrophoretic identification of early juvenile yellowfin tuna, Thunnus albacares. Fish. Bull. 86: 835-838.
    • (1988) Fish. Bull , vol.86 , pp. 835-838
    • Graves, J.E.1    Simovich, M.A.2    Schaefer, K.M.3
  • 21
    • 0028077995 scopus 로고
    • Biological and oceanographic insights from larval labrid (Pisces: Labridae) identification using mtDNA sequences
    • Hare, J. A., R. K. Cowen, J. P. Zehr, F. Jeanes, and K. H. Day. 1994. Biological and oceanographic insights from larval labrid (Pisces: Labridae) identification using mtDNA sequences. Mar. Biol. 118:17-24.
    • (1994) Mar. Biol , vol.118 , pp. 17-24
    • Hare, J.A.1    Cowen, R.K.2    Zehr, J.P.3    Jeanes, F.4    Day, K.H.5
  • 24
    • 14644403106 scopus 로고    scopus 로고
    • Shipboard identification of fish eggs and larvae by multiplex PCR, and description of fertilized eggs of blue marlin, shortbill spearfish, and wahoo
    • Hyde, J. R., E. Lynn, R. Humphreys Jr., M. Musyl, A. P. West, and R. Vetter. 2005. Shipboard identification of fish eggs and larvae by multiplex PCR, and description of fertilized eggs of blue marlin, shortbill spearfish, and wahoo. Mar. Ecol. Prog. Ser. 286: 269-277.
    • (2005) Mar. Ecol. Prog. Ser , vol.286 , pp. 269-277
    • Hyde, J.R.1    Lynn, E.2    Humphreys Jr., R.3    Musyl, M.4    West, A.P.5    Vetter, R.6
  • 25
    • 10644271557 scopus 로고    scopus 로고
    • Novel method for the authentication of frigate tunas (Auxis thazard and Auxis rochei) in commercial canned products
    • Infante, C., G. Catanese, M. Ponce, and M. Manchado. 2004. Novel method for the authentication of frigate tunas (Auxis thazard and Auxis rochei) in commercial canned products. J. Agric. Food Chem. 52: 7435-7443.
    • (2004) J. Agric. Food Chem , vol.52 , pp. 7435-7443
    • Infante, C.1    Catanese, G.2    Ponce, M.3    Manchado, M.4
  • 26
    • 0034864228 scopus 로고    scopus 로고
    • PCR from the CPR offers a historical perspective on marine population ecology
    • Kirby, R. R. and P. C. Reid. 2001. PCR from the CPR offers a historical perspective on marine population ecology. J. Mar. Biol. Assoc. U. K. 81: 539-540.
    • (2001) J. Mar. Biol. Assoc. U. K , vol.81 , pp. 539-540
    • Kirby, R.R.1    Reid, P.C.2
  • 27
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinfo. 5:150-163.
    • (2004) Brief. Bioinfo , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 28
    • 20744434408 scopus 로고    scopus 로고
    • Application of relative quantification TaqMan real-time polymerase chain reaction technology for the identification and quantification of Thunnus alalunga and Thunnus albacares
    • Lopez, I. and M. A. Pardo. 2005. Application of relative quantification TaqMan real-time polymerase chain reaction technology for the identification and quantification of Thunnus alalunga and Thunnus albacares. J. Agric. Food Chem. 53: 4554-4560.
    • (2005) J. Agric. Food Chem , vol.53 , pp. 4554-4560
    • Lopez, I.1    Pardo, M.A.2
  • 29
    • 0003911165 scopus 로고    scopus 로고
    • v. 4.07. Sinauer Associates, Inc. Sunderland, MA
    • Maddison, D. R. and W. P. Maddison. 2005. MacClade v. 4.07. Sinauer Associates, Inc. Sunderland, MA.
    • (2005) MacClade
    • Maddison, D.R.1    Maddison, W.P.2
  • 30
    • 0036329376 scopus 로고    scopus 로고
    • Nuclear and mitochondrial DNA markers for specific identification of istiophorid and xiphiid billfishes
    • McDowell, J. R. and J. E. Graves. 2002. Nuclear and mitochondrial DNA markers for specific identification of istiophorid and xiphiid billfishes. Fish. Bull. 100: 537-544.
    • (2002) Fish. Bull , vol.100 , pp. 537-544
    • McDowell, J.R.1    Graves, J.E.2
  • 31
    • 0005656273 scopus 로고
    • Distinguishing larval white perch and striped bass by electrophoresis
    • Morgan, R. P. 1975. Distinguishing larval white perch and striped bass by electrophoresis. Chesapeake Sci. 16: 68-70.
    • (1975) Chesapeake Sci , vol.16 , pp. 68-70
    • Morgan, R.P.1
  • 33
    • 21844454989 scopus 로고    scopus 로고
    • Genetic identification of hake and megrim eggs in formaldehyde-fixed plankton samples
    • Perez, J., P. Alvarez, J. L. Martinez, and E. Garcia-Vazquez. 2005. Genetic identification of hake and megrim eggs in formaldehyde-fixed plankton samples. ICES J. Mar. Sci. 62: 908-914.
    • (2005) ICES J. Mar. Sci , vol.62 , pp. 908-914
    • Perez, J.1    Alvarez, P.2    Martinez, J.L.3    Garcia-Vazquez, E.4
  • 34
    • 0000336811 scopus 로고    scopus 로고
    • Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-Restriction fragment length polymorphism methodologies in species identification of canned tuna
    • Quintero, J., C. G. Sotelo, H. Rehbein, S. E. Pryde, I. Medina, R. I. Perez-Marin, M. Rey-Mendez, and I. M. Mackie. 1998. Use of mtDNA direct polymerase chain reaction (PCR) sequencing and PCR-Restriction fragment length polymorphism methodologies in species identification of canned tuna. J. Agric. Food Chem. 46:1662-1669.
    • (1998) J. Agric. Food Chem , vol.46 , pp. 1662-1669
    • Quintero, J.1    Sotelo, C.G.2    Rehbein, H.3    Pryde, S.E.4    Medina, I.5    Perez-Marin, R.I.6    Rey-Mendez, M.7    Mackie, I.M.8
  • 35
    • 0001369799 scopus 로고    scopus 로고
    • Authentication of canned tuna and bonito by sequence and restriction site analysis of polymerase chain reaction products of mitochondrial DNA
    • Ram, J. L., M. L. Ram, and F. F. Baidoun. 1996. Authentication of canned tuna and bonito by sequence and restriction site analysis of polymerase chain reaction products of mitochondrial DNA. J. Agric. Food Chem. 44: 2460-2467.
    • (1996) J. Agric. Food Chem , vol.44 , pp. 2460-2467
    • Ram, J.L.1    Ram, M.L.2    Baidoun, F.F.3
  • 36
    • 0036791993 scopus 로고    scopus 로고
    • Functional coadaptation between cytochrome c and cytochrome c oxidase within allopatric populations of a marine copepod
    • Rawson, P. D. and R. S. Burton. 2002. Functional coadaptation between cytochrome c and cytochrome c oxidase within allopatric populations of a marine copepod. PNAS 99: 12955-12958.
    • (2002) PNAS , vol.99 , pp. 12955-12958
    • Rawson, P.D.1    Burton, R.S.2
  • 38
    • 26444438281 scopus 로고
    • Problems identifying tuna larvae to species (Pisces: Scombridae: Thunnus) from the Gulf of Mexico
    • -, T. Potthoff, and J.-M. Kim. 1990. Problems identifying tuna larvae to species (Pisces: Scombridae: Thunnus) from the Gulf of Mexico. Fish. Bull. 88: 607-609.
    • (1990) Fish. Bull , vol.88 , pp. 607-609
    • Richards, W.J.1    Potthoff, T.2    Kim, J.-M.3
  • 39
    • 0032585559 scopus 로고    scopus 로고
    • Multiplex haplotype-specific PCR: A new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier
    • Rocha-Olivares, A. 1998. Multiplex haplotype-specific PCR: a new approach for species identification of the early life stages of rockfishes of the species-rich genus Sebastes Cuvier. J. Exp. Mar. Biol. Ecol. 231: 279-290.
    • (1998) J. Exp. Mar. Biol. Ecol , vol.231 , pp. 279-290
    • Rocha-Olivares, A.1
  • 40
    • 0004136246 scopus 로고    scopus 로고
    • Third edition. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York
    • Sambrook, J. and D. W. Russell. 2001. Molecular cloning: A laboratory manual. Third edition. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, New York.
    • (2001) Molecular cloning: A laboratory manual
    • Sambrook, J.1    Russell, D.W.2
  • 41
    • 0001881618 scopus 로고
    • Preservation of avian blood and tissue samples for DNA analysis
    • Seutin, G., B. N. White, and P. T. Boag. 1991. Preservation of avian blood and tissue samples for DNA analysis. Can. J. Zool. 69: 82-90.
    • (1991) Can. J. Zool , vol.69 , pp. 82-90
    • Seutin, G.1    White, B.N.2    Boag, P.T.3
  • 42
    • 33845571460 scopus 로고    scopus 로고
    • DNA identification of gut contents of large pelagic fishes
    • Smith, P. J., S. M. McVeagh, V. Allain, and C. Sanchez. 2005. DNA identification of gut contents of large pelagic fishes. J. Fish Biol. 67:1178-1183.
    • (2005) J. Fish Biol , vol.67 , pp. 1178-1183
    • Smith, P.J.1    McVeagh, S.M.2    Allain, V.3    Sanchez, C.4
  • 44
    • 0037180951 scopus 로고    scopus 로고
    • Statistical validation of the identification of tuna species: Bootstrap analysis of mitochondrial DNA sequences
    • Terol, J., R. Mascarell, V. Fernandez-Pedrosa, and M. Perez-Alonso. 2002. Statistical validation of the identification of tuna species: Bootstrap analysis of mitochondrial DNA sequences. J. Agric. Food Chem. 50: 963-969.
    • (2002) J. Agric. Food Chem , vol.50 , pp. 963-969
    • Terol, J.1    Mascarell, R.2    Fernandez-Pedrosa, V.3    Perez-Alonso, M.4
  • 45
    • 7044282893 scopus 로고    scopus 로고
    • Mitochondrial genetic characterization of bluefin tuna (Thunnus thynnus) from three Mediterranean (Libya, Malta, Tunisia); and one Atlantic locations (Gulf of Cadiz)
    • Vinas, J., C. Pla, M. Y. Tawil, A. Hattour, A. F. Farrugia, and J. M. de la Serna. 2003. Mitochondrial genetic characterization of bluefin tuna (Thunnus thynnus) from three Mediterranean (Libya, Malta, Tunisia); and one Atlantic locations (Gulf of Cadiz). ICCAT 55: 1282-1288.
    • (2003) ICCAT , vol.55 , pp. 1282-1288
    • Vinas, J.1    Pla, C.2    Tawil, M.Y.3    Hattour, A.4    Farrugia, A.F.5    de la Serna, J.M.6
  • 46
    • 84986512496 scopus 로고
    • Population genetics of tunas
    • Ward, R. D. 1995. Population genetics of tunas. J. Fish Biol. 47 (Supplement A): 259-280.
    • (1995) J. Fish Biol , vol.47 , Issue.SUPPL.EMENT A , pp. 259-280
    • Ward, R.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.