Genetic discrimination of middle Mississippi River Scaphirhynchus sturgeon into pallid, shovelnose, and putative hybrids with multiple microsatellite loci

Conservation Genetics

Volumn 8, Issue 3, 2007, Pages 683-693

  Schrey, A W ^a   Sloss, B L ^b   Sheehan, R J ^a   Heidinger, R C ^a   Heist, E J ^a  

^a SOUTHERN ILLINOIS UNIVERSITY   (United States)

^b UNIVERSITY OF WISCONSIN STEVENS POINT   (United States)

Author keywords

Assignment testing; Endangered species; Microsatellite; Scaphirhynchus; Species identification

Indexed keywords

ALLELE; BAYESIAN ANALYSIS; ENDANGERED SPECIES ACT; GENETIC MARKER; GENETIC VARIATION; HOME RANGE; HYBRID; HYBRIDIZATION; IDENTIFICATION METHOD; MAXIMUM LIKELIHOOD ANALYSIS; MORPHOLOGY; RELATEDNESS; SPECIES CONSERVATION; SYMPATRY; TELEOST;

MISSISSIPPI RIVER; NORTH AMERICA; UNITED STATES;

ACIPENSERIDAE; SCAPHIRHYNCHUS; SCAPHIRHYNCHUS ALBUS;

EID: 34247576144     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-006-9215-9     Document Type: Article

References (37)

1. Allendorf FW, Leary RF, Spruell P, Wenburg JK (2001) The problems with hybrids: setting conservation guidelines. TREE 16:613-622
2. Bailey RM, Cross FB (1954) River sturgeons of the American genus Scaphirhynchus: characters, distribution, and synonymy. Pap Mich Acad Sci Arts & Lett 36:169-208, 54
3. Birstein VJ (1993) Sturgeons and paddlefishes: threatened fishes in need of conservation. Conserv Biol 7:773-787
4. Bischof R, Szalanski AL (2000) Mitochondrial-DNA variation in pallid and shovelnose sturgeons, Scaphirhynchus (Pisces: Acipenseridae). Trans Nebr Acad Sci 26:19-21
5. Campton DE, Bass AL, Chapman FA, Bowen BW (2000) Genetic distinction of pallid, shovelnose, and Alabama sturgeon: emerging species and the US Endangered Species Act. Conserv Genet 1:17-32
6. Chakraborty R, Jin L (1993) A unified approach to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances. In: Chakraborty R, Epplen JT (eds) DNA fingerprinting: state of the science. AJ Jefferys Birkhauser, Verlag
7. Carlson DM, Pflieger WL, Trial L, Haverland PS (1985) Distribution, biology and hybridization of Scaphirhynchus albus and S. platorhynchus in the Missouri and Mississippi Rivers. Environ Biol Fish 14:51-59
8. Dryer MP, Sandoval AJ (1993) Recovery plan for the pallid sturgeon (Scaphirhynchus albus). US Fish and Wildlife Service, Denver, 55 pp
9. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Mol Ecol 14:2611-2620
10. Forbes SA, Richardson RE (1905) On a new shovelnose sturgeon from the Mississippi River. Bull Illinois State Lab Nat Hist 7:37-44
11. Falush D, Stephens M, Pritchard JK (2003) Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. Genetics 164:1567-1587
12. Goudet J (2001) FSTAT, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Available from http://www.unil.ch/izea/ softwares/fstat.html. Updated from Goudet (1995). Cited Feb 2002
13. Goudet J (1995) FSTAT (vers. 1.2): a computer program to calculate F-statistics. J Hered 86:485-486
14. Goudet J, Raymond M, Demeeus T, Rousset F (1996) Testing differentiation in diploid populations. Genetics 144:1933-1940
15. Hansen MM, Kenchington E, Nielsen EE (2001) Assigning individual fish to populations using microsatellite DNA markers. Fish Fish 2:93-121
16. Keenlyne KD (1997) Life history and status of the shovelnose sturgeon, Scaphirhynchus platorhynchus. Environ Biol Fish 48:291-298
17. Kuhajda BR, Mayden RL (2001) Morphological comparisons of hatchery-reared specimens of Scaphirhynchus albus, S. platorhynchus, and S. albus x S. platorhynchus hybrids. Final Report US Fish and Wildlife Service Bismarck, North Dakota, 119 pp
18. Langella O (2002) Populations 1.2.28 (available at http://www.cnrs-gif. fr/pge/bioinfo/populations/index.php?lang=en#ancre-bibliographie. Cited 5 Dec 2002
19. Lewis PO, Zaykin D (2001) Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c). Free program distributed by the authors over the internet from http://lewis.eeb.uconn.edu/lewishome/software. html. Cited 2001
20. Manel S, Gaggiotti OE, Waples RS (2005) Assignment methods: matching biological questions with appropriate techniques. TREE 20:136-142
21. Miller LM, Kapuscinski AR (2003) Genetic guidelines for hatchery supplementation programs. In: Hallerman EM (ed) Population genetics: principles and applications for fisheries scientists. American Fisheries Society, Bethesda, MD
22. McQuown EC, Sloss BL, Sheehan RJ, Rodzen J, Tranah GJ, May B (2000) Microsatellite analysis of genetic variation in sturgeon: new primer sequences for Scaphirhynchus and Acipenser. Trans Am Fish Soc 129:1380-1388
23. Paetkau D, Slade R, Burden M, Estoup A (2004) Genetic assignment methods for direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol Ecol 13:55-65
24. Paetkau D, Calvert W, Stirling I, Strobeck C (1995) Microsatellite analysis of population structure in Canadian polar bears. Mol Ecol 4:347-354
25. Phelps SR, Allendorf FW (1983) Genetic identity of pallid and shovelnose sturgeon (Scaphirhynchus albus and S. platorhynchus). Copeia 1983:696-700
26. Piry S, Alapetite A, Cornuet J-M, Paetkau D, Baudouin L, Estoup A (2004) GeneClass2. A software for genetic assignment and first-generation migrant detection. J Hered 95:536-539
27. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
28. Rannala B, Mountain J (1997) Detecting immigration using multilocus genotypes. Proc Natl Acad Sci USA 94:9197-9201
29. Rice WR(1989) Analyzing tables of statistical tests. Evolution 43:223-225
30. Rhymer JM, Simberloff D (1996) Extinction by hybridization and introgression. Annu Rev Ecol Syst 27:83-109
31. Straughan DJ, Burnham-Curtis ME, Fain SR (2002) Experimental search for forensically useful markers in the genus Scaphirhynchus. J App Ichthyol 18:621-628
32. Tranah G, Campton DE, May B (2004) Genetic evidence for hybridization of pallid and shovelnose sturgeon. J Hered 95:474-480
33. Tranah GJ, Kincaid HL, Krueger CC, Campton DE, May B (2001) Reproductive isolation in sympatric populations of pallid and shovelnose sturgeon. N Am J Fish Manage 21:367-373
34. Vaha JP, Primmer CR (2006) Efficiency of model-based Bayesian methods for detecting hybrid individuals under different hybridization scenarios and with different numbers of loci. Mol Ecol 15:63-72
35. Weir BS, Cockerham CS (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1258-1370
36. Wills PS, Sheehan RJ, Heidinger R, Sloss BL, Clevenstine R (2002) Differentiation of pallid sturgeon and shovelnose sturgeon using an index based on meristics and morphometrics. Am Fish Soc Symp 28:249-258
37. Wirgin II, Stabile JE, Waldman JR (1997) Molecular analysis in the conservation of sturgeons and paddlefish. Environ Biol Fish 48:385-398