Genome-wide reprogramming in hybrids of somatic cells and embryonic stem cells

Stem Cells

Volumn 25, Issue 5, 2007, Pages 1104-1113

  Ambrosi, Dominic J ^a   Tanasijevic, Borko ^a   Kaur, Anupinder ^b   Obergfell, Craig ^a   O'Neill, Rachel J ^a   Krueger, Winfried ^b   Rasmussen, Theodore P ^a  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b UNIVERSITY OF CONNECTICUT SCHOOL OF MEDICINE   (United States)

Author keywords

Fusion; Genomics; Reprogramming; Stem cells

Indexed keywords

ANIMAL CELL; ARTICLE; CHROMATIN; CHROMOSOME; CONTROLLED STUDY; EMBRYONIC STEM CELL; FIBROBLAST; GENE EXPRESSION; GENETIC REGULATION; GENOME ANALYSIS; HYBRID; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; SINGLE NUCLEOTIDE POLYMORPHISM; SOMATIC CELL;

ALLELES; ANIMALS; BASE SEQUENCE; CELL LINE; CHIMERA; CHROMOSOMES, MAMMALIAN; CLUSTER ANALYSIS; DNA MUTATIONAL ANALYSIS; EMBRYONIC STEM CELLS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOME; KARYOTYPING; MICE; MOLECULAR SEQUENCE DATA; NUCLEAR REPROGRAMMING; PLURIPOTENT STEM CELLS; TRANSCRIPTION, GENETIC;

EID: 34247564557     PISSN: 10665099     EISSN: None     Source Type: Journal    
DOI: 10.1634/stemcells.2006-0532     Document Type: Article

References (32)

1. Gurdon JB, Elsdale TR, Fischberg M. Sexually mature individuals of Xenopus laevis from the transplantation of single somatic nuclei. Nature 1958;182:64-65.
2. Campbell KH, McWhir J, Ritchie WA et al. Sheep cloned by nuclear transfer from a cultured cell line. Nature 1996;380:64-66.
3. Wilmut I, Schnieke AE, McWhir J et al. Viable offspring derived from fetal and adult mammalian cells. Nature 1997;385:810-813.
4. Jaenisch R, Eggan K, Humpherys D et al. Nuclear cloning, stem cells, and genomic reprogramming. Cloning Stem Cells 2002;4:389-396.
5. Rideout WM 3rd, Hochedlinger K, Kyba M et al. Correction of a genetic defect by nuclear transplantation and combined cell and gene therapy. Cell 2002;109:17-27.
6. Ambrosi DJ, Rasmussen TP. Reprogramming mediated by stem cell fusion. J Cell Mol Med 2005;9:320-330.
7. Matveeva NM, Shilov AG, Baiborodin SI et al. [Hybrids between murine embryonal stem and somatic cells maintain their pluripotency]. Russian. Dokl Akad Nauk 1996;349:129-132.
8. Matveeva NM, Shilov AG, Kaftanovskaya EM et al. In vitro and in vivo study of pluripotency in intraspecific hybrid cells obtained by fusion of murine embryonic stem cells with splenocytes. Mol Reprod Dev 1998;50:128-138.
9. Tada M, Takahama Y, Abe K et al. Nuclear reprogramming of somatic cells by in vitro hybridization with ES cells. Curr Biol 2001;11:1553-1558.
10. Kimura H, Tada M, Nakatsuji N et al. Histone code modifications on pluripotential nuclei of reprogrammed somatic cells. Mol Cell Biol 2004;24:5710-5720.
11. Tada M, Morizane A, Kimura H et al. Pluripotency of reprogrammed somatic genomes in embryonic stem hybrid cells. Dev Dyn 2003;227:504-510.
12. Hatano SY, Tada M, Kimura H et al. Pluripotential competence of cells associated with Nanog activity. Mech Dev 2005;122:67-79.
13. Do JT, Scholer HR. Nuclei of embryonic stem cells reprogram somatic cells. STEM CELLS 2004;22:941-949.
14. Cowan CA, Atienza J, Melton DA et al. Nuclear reprogramming of somatic cells after fusion with human embryonic stem cells. Science 2005;309:1369-1373.
15. Yu J, Vodyanik MA, He P et al. Human embryonic stem cells reprogram myeloid precursors following cell-cell fusion. STEM CELLS 2006;24:168-176.
16. Van Gelder RN, Von Zastrow ME, Yool A et al. Amplified RNA synthesized from limited quantities of heterogeneous cDNA. Proc Natl Acad Sci U S A 1990;87:1663-1667.
17. Li C, Wong WH. Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc Natl Acad Sci U S A 2001;98:31-36.
18. Barberi T, Klivenyi P, Calingasan NY et al. Neural subtype specification of fertilization and nuclear transfer embryonic stem cells and application in parkinsonian mice. Nat Biotechnol 2003;21:1200-1207.
19. Kerr MK, Martin M, Churchill GA. Analysis of variance for gene expression microarray data. J Comput Biol 2000;7:819-837.
20. Eppig JT, Bult CJ, Kadin JA et al. The Mouse Genome Database (MGD): From genes to mice - a community resource for mouse biology. Nucleic Acids Res 2005;33(Database issue):D471-D475.
21. Rozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000;132:365-386.
22. Smit AFA, Hubley R, Green P. RepeatMasker. Available at http://repeatmasker.org. 1996-2005.
23. Ferreri GC, Marzelli M, Rens W et al. A centromere-specific retroviral element associated with breaks of synteny in macropodine marsupials. Cytogenet Genome Res 2004;107:115-118.
24. Nutt SL, Vambrie S, Steinlein P et al. Independent regulation of the two Pax5 alleles during B-cell development. Nat Genet 1999;21:390-395.
25. Brown JD, Strbuncelj M, Giardina C et al. Interspecific hybridization induced amplification of Mdm2 on double minutes in a Mus hybrid. Cytogenet Genome Res 2002;98:184-188.
26. van Raamsdonk CD, Tilghman SM. Optimizing the detection of nascent transcripts by RNA fluorescence in situ hybridization. Nucleic Acids Res 2001;29:E42.
27. Ohno M, Aoki N, Sasaki H. Allele-specific detection of nascent transcripts by fluorescence in situ hybridization reveals temporal and culture-induced changes in Igf2 imprinting during pre-implantation mouse development. Genes Cells 2001;6:249-259.
28. Zambrowicz BP, Imamoto A, Fiering S et al. Disruption of overlapping transcripts in the ROSA beta geo 26 gene trap strain leads to widespread expression of beta-galactosidase in mouse embryos and hematopoietic cells. Proc Natl Acad Sci U S A 1997;94:3789-3794.
29. Li C, Wong HW. DNA-Chip analyzer (dChip). In: Parmigiani G, Garrett ES, Irizarry R, Zeger SL, eds. The Analyses of Gene Expression Data: Methods and Software. New York: Springer Verlag, 2003.
30. Silva J, Chambers I, Pollard S et al. Nanog promotes transfer of pluripotency after cell fusion. Nature 2006;441:997-1001.
31. Wakayama T, Tateno H, Mombaerts P et al. Nuclear transfer into mouse zygotes. Nat Genet 2000;24:108-109.
32. Takahashi K, Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell 2006;126:663-676.