Phylogeography of rusty-necklaced partridge (Alectoris magna) in northwestern China

Molecular Phylogenetics and Evolution

Volumn 43, Issue 2, 2007, Pages 379-385

  Huang, Zuhao ^a,b   Liu, Naifa ^b   Luo, Shuixiang ^a   Long, Jin ^a  

^a JINGGANGSHAN UNIVERSITY   (China)

^b LANZHOU UNIVERSITY   (China)

Author keywords

Alectoris magna; Mitochondrial DNA control region; Phylogeography

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CHINA; CLASSIFICATION; GALLIFORMES; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; PHYLOGENY; REGULATOR GENE;

ANIMALS; CHINA; DNA, MITOCHONDRIAL; GALLIFORMES; HAPLOTYPES; LOCUS CONTROL REGION; PHYLOGENY; VARIATION (GENETICS);

ALECTORIS MAGNA;

EID: 34247556929     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.01.005     Document Type: Article

References (35)

1. Arbogast B., and Kenagy G.J. Comparative phylogeography as an integrative approach to historical biogeography. J. Biogeogr. 28 (2001) 819-825
2. Aris-Brosou S., and Excoffier L. The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism. Mol. Biol. Evol. 13 (1996) 494-504
3. Aurelle D., and Berrebi P. Genetic structure of brown trout (Salmo trutta, L.) populations from south-western France: data from mitochondrial control region variability. Mol. Ecol. 10 (2001) 1551-1561
4. Avise J.C. Phylogeography (2000), Harvard University Press, Cambridge
5. Avise J.C., Arnold J., Ball R.M., Bermingham E., Lamb T., Niegel J.E., Reeb C.A., and Saunders N.C. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Ann. Rev. Ecol. Syst. 18 (1987) 489-522
6. Avise J.C. Molecular Markers, Natural History and Evolution (1994), Chapman & Hall, New York
7. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
8. Hewitt G.M. The genetic legacy of the Quaternary ice ages. Nature 405 (2000) 907-913
9. Huang Z.H., and Liu N.F. Genetic structure of chukar partridge (Alectoris chukar) populations in the Longdong Loess Plateau, China. J. Ornithol. 145 (2004) 137-141
10. Huelsenbeck J.P., and Ronquist F. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
11. Li B.Y., and Li J.J. Quaternary Glacial Distribution of the Tibet Plateau (1991), Science Press, Beijing
12. Liu N.F. On the taxonomic status of Alectoris magna. Acta Zootaxonomica Sinica 9 (1984) 212-217
13. Liu N.F., Huang Z.H., and Wen L.Y. Subspecies divergence of przewalski's rock partridge (Alectoris magna) description of a new subspecies. Acta Zootaxonomica Sinica 29 (2004) 600-605
14. Loewe L., and Scherer S. Mitochondrial Eve: the plot thichens. Trends Ecol. Evol. 12 (1997) 422-423
15. Lucchini V., and Randi E. Mitochondrial DNA sequence variation and phylogeographcial structure of rock partridge (Alectoris graeca) populations. Heredity 31 (1998) 528-536
16. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer Res. 27 (1967) 209-220
17. Marmi J., Lopez-Giraldez F., Macdonald D.W., Calafell F., Zholnerovskaya E., and Domingo-Roura X. Mitochondrial DNA reveals a strong phylogeographic structure in the badger across Eurasia. Mol. Ecol. 15 (2006) 1007-1020
18. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
19. Qu Y.H., Ericson P.G., Lei F.M., and Li S.H. Postglacial colonization of the Tibet Plateau inferred from the matrilineal genetic structure of the endemic red-necked snow finch, Pyrgilauda ruficollis. Mol. Ecol. 14 (2005) 1767-1781
20. Randi E. A mitochondrial cytochrome b phylogeny of the Alectoris partridges. Mol. Phylogenet. Evol. 6 (1996) 214-227
21. Randi E., and Bernard-Laurent A. Population genetic of a hybrid zone between the red-legged partridge and rock partridge. Auk 116 (1999) 324-337
22. Randi E., and Lucchini V. Organization and evolution of the mitochondrial DNA control region in the avian genus Alectoris. J. Mol. Evol. 47 (1998) 449-462
23. Randi E., Tabarroni C., Rimondi S., Lacchini V., and Sfougaris A. Phylogeography of the rock partridge (Alectoris graeca). Mol. Ecol. 12 (2003) 2201-2214
24. Recueroc E., Martinez-Solano I., Parra-Olea G., and Garcia-Paris M. Phylogeography of Pseudacris regilla (Anura: Hylidae) in western North America, with a proposal for a new taxonomic rearrangement. Mol. Phylogenet. Evol. 39 (2006) 293-304
25. Rogers A.R., and Harpending H. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9 (1992) 552-569
26. Rooney A.P., Honeycutt R.L., and Derr J.N. Historical population size change of bowhead whales inferred from NDA sequence polymorphism data. Evolution 55 (2001) 1685-1687
27. Rozas J., Sánchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
28. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstruction phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
29. Schneider, S., Roessli, D., Excoffier, L., 2002. Arlequin Version 2.0: A Software for Population Genetics Data Analysis. Genetics and Biometry Laboratory, Department of Anthropology and Ecology, University of Geneva, Geneva, Switzerland.
30. Strimmer K., and Haeseler A.V. Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13 (1996) 964-969
31. * and Other Methods) (2002), Sinauer Associates, Sunderland, MA
32. Taberlet P., Fumaglli L., and Wust-saucy A. Comparative phylogeography and postglacial colonization routes in Europe. Mol. Ecol. 7 (1998) 477-494
33. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123 (1989) 585-595
34. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface flexible strategies for multiple sequence alignment aided by quality analysis tool. Nucleic Acid Res. 24 (1997) 4876-4882
35. Yang S.J., Lei F.M., Qu Y.H., and Yin Z.H. Intraspecific phylogeography of the white-rumped snowfinch (Onychostruthus taczanowskii) endemic to the Tibetan Plateau based on mtDNA sequence. J. Zool. 268 (2005) 187-192