A comparative analysis of linear, nonlinear and improved nonlinear thermodynamic models of voltage-dependent ion channel kinetics

Physica A: Statistical Mechanics and its Applications

Volumn 379, Issue 2, 2007, Pages 579-586

  Ozer, Mahmut ^a  

^a ZONGULDAK KARAELMAS UNIVERSITY   (Turkey)

Author keywords

Conformation; Excitable membranes; Ion channel; Thermodynamic model

Indexed keywords

CONFORMATIONS; ION EXCHANGE MEMBRANES; KINETIC THEORY; MATHEMATICAL MODELS; RATE CONSTANTS; THERMODYNAMICS;

EXCITABLE MEMBRANES; ION CHANNEL; ION CHANNEL KINETICS; THERMODYNAMIC MODEL;

IONIC CONDUCTION;

EID: 34247513899     PISSN: 03784371     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.physa.2007.02.034     Document Type: Article

References (35)

1. Hodgkin A.L., and Huxley A.F. J. Physiol. London 117 (1952) 500
2. Sakman B., and Neher E. Single-Channel Recording. second ed (1995), Plenum Press, New York
3. Destexhe A., and Huguenard J. Which formalism to use for modeling voltage-dependent conductances?. In: De Schutter E. (Ed). Computational Neuroscience: Realistic Modeling for Experimentalists (2001), CRC Press, New York
4. Lowen S.B., Liebovitch L.S., and White J.A. Phys. Rev. E 59 (1999) 5970
5. Yang Y.S., Thompson C.J., Anderson V., and Wood A.V. Physica A 268 (1999) 424
6. Roux B. Biophys. J. 77 (1999) 139
7. Erdem R., and Ekiz C. Phys. Lett. A 331 (2004) 28
8. Erdem R., and Ekiz C. Physica A 351 (2005) 417
9. Ozer M., and Erdem R. NeuroReport 14 (2003) 1071
10. Ozer M. Chin. J. Phys. 41 (2003) 206
11. Ozer M. Relaxation phenomena in the (in)activation gates of voltage-gated ion channels. In: Taş K., Baleanu D., Krupka D., and Krupkova O. (Eds). Global Analysis and Applied Mathematics (2004), AIP 729, New York
12. Ozer M., and Provaznik I. J. Theor. Biol. 233 (2005) 237
13. Ozer M., and Erdem R. Physica A 331 (2004) 51
14. Ozer M., Erdem R., and Provaznik I. NeuroReport 15 (2004) 335
15. Ozer M. Physica A 357 (2005) 397
16. Eyring H. J. Chem. Phys. 3 (1935) 107
17. Johnson F.H., Eyring H., and Stover B.J. The Theory of Rate Process in Biology and Medicine (1974), Wiley, New York
18. Andersen O., and Koeppe II R.E. Physiol. Rev. 72 (1992) S89
19. Hille B. Ionic Channels of Excitable Membranes (1992), Sinauer Associates, Sunderland, MA
20. Johnston D., and Wu S.M. Foundation of Cellular Neurophysiology (1995), MIT Press, Cambridge, MA
21. Borg-Graham L.J. Modeling the non-linear conductances of excitable membranes. In: Wheal H., and Chad J. (Eds). Cellular and Molecular Neurobiology: A Practical Approach (1991), Oxford University Press, Oxford
22. Willms A.R., Baro D.J., Harris-Warrick R.M., and Guckenheimer J. J. Comput. Neurosci. 6 (1999) 145
23. Destexhe A., and Huguenard J.R. J. Comput. Neurosci. 9 (2000) 259
24. Ozer M. NeuroReport 15 (2004) 1953
25. Huguenard J.R., and McCormick D.A. J. Neurophysiol. 68 (1992) 1373
26. Hofmann F., Lacinova L., and Klugbauer N. Rev. Physiol. Biochem. Pharmacol. 139 (1999) 33
27. Lacinova L., Klugbauer N., and Hofmann F. FEBS Lett. 531 (2002) 235
28. Lacinova L. Gen. Physiol. Biophys. 24 (2005) 1
29. Destexhe A., Mainen Z.F., and Sejnowski T.J. J. Comput. Neurosci. 1 (1994) 195
30. Hill T.L., and Chen Y.D. Proc. Natl. Acad. Sci. USA 69 (1972) 1723
31. Tsien R.W., and Noble D.A. J. Membr. Biol. 1 (1969) 248
32. Stevens C.F. Biophys. J. 22 (1978) 295
33. Frauenfelder H., Sligar S.G., and Wolynes P.G. Science 254 (1991) 1598
34. Goychuk I., and Hanggi P. Proc. Natl. Acad. Sci. 99 (2002) 3552
35. Fenimore P.W., Frauenfelder H., McMahon B.H., and Young R.D. Physica A 351 (2005) 1