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Volumn 8, Issue , 2007, Pages

Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arrays

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; DIAGNOSTIC VALUE; DNA MICROARRAY; FISHER EXACT TEST; GENE EXPRESSION; GENE IDENTIFICATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STATISTICAL SIGNIFICANCE; ANIMAL; COMPARATIVE STUDY; DIAGNOSTIC PROCEDURE; GENE EXPRESSION REGULATION; LABORATORY DIAGNOSIS; MOUSE; ROC CURVE; STATISTICAL ANALYSIS; TRANSGENIC MOUSE;

EID: 34247484511     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-8-96     Document Type: Article
Times cited : (47)

References (28)
  • 2
    • 0035793042 scopus 로고    scopus 로고
    • Model-based analysis of oligonuecleotide arrays: Expression index computation and outlier detection
    • Li C Wong WH Model-based analysis of oligonuecleotide arrays: Expression index computation and outlier detection Proceedings of the National Academy of Sciences 2001 98 31-36
    • (2001) Proceedings of the National Academy of Sciences , vol.98 , pp. 31-36
    • Li, C.1    Wong, W.H.2
  • 4
    • 4544341015 scopus 로고    scopus 로고
    • Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
    • Smyth GK Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments Statistical Applications in Genetics and Molecular Biology 2004 3 3
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3 , pp. 3
    • Smyth, G.K.1
  • 6
    • 0034948896 scopus 로고    scopus 로고
    • A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inference of gene changes
    • 11395427
    • Baldi P Long AD A Bayesian framework for the analysis of microarray expression data: Regularized t-test and statistical inference of gene changes Bioinformatics 2001 17 509-519 11395427
    • (2001) Bioinformatics , vol.17 , pp. 509-519
    • Baldi, P.1    Long, A.D.2
  • 8
    • 2942604440 scopus 로고    scopus 로고
    • Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays
    • 411067 15099405
    • Barrera L Benner C Tao YC Winzeler E Zhou Y Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays BMC Bioinformatics 2004 5 42 411067 15099405
    • (2004) BMC Bioinformatics , vol.5 , pp. 42
    • Barrera, L.1    Benner, C.2    Tao, Y.C.3    Winzeler, E.4    Zhou, Y.5
  • 10
    • 2342598771 scopus 로고    scopus 로고
    • A high performance test of differential gene expression for oligonucleotide arrays
    • 328456 14519202
    • Lemon WJ Liyanarachchi S You M A high performance test of differential gene expression for oligonucleotide arrays Genome Biology 2003 4 R67 328456 14519202
    • (2003) Genome Biology , vol.4
    • Lemon, W.J.1    Liyanarachchi, S.2    You, M.3
  • 11
    • 0036289082 scopus 로고    scopus 로고
    • A New Algorithm for Analysis of Oligonucleotide Arrays: Application to Expression Profiling in Mouse Brain Regions
    • 11902839
    • Zhang L Wang L Ravindranathan A Miles MF A New Algorithm for Analysis of Oligonucleotide Arrays: Application to Expression Profiling in Mouse Brain Regions Journal of Molecular Biology 2002 317 225-235 11902839
    • (2002) Journal of Molecular Biology , vol.317 , pp. 225-235
    • Zhang, L.1    Wang, L.2    Ravindranathan, A.3    Miles, M.F.4
  • 12
    • 33748644662 scopus 로고    scopus 로고
    • Probe-level measurement error improves accuracy in detecting differential gene expression
    • 16820429
    • Liu X Milo M Lawrence ND Rattray M Probe-level measurement error improves accuracy in detecting differential gene expression Bioinformatics 2006 22 2107-2113 16820429
    • (2006) Bioinformatics , vol.22 , pp. 2107-2113
    • Liu, X.1    Milo, M.2    Lawrence, N.D.3    Rattray, M.4
  • 13
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • Benjamini Y Hochberg Y Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing Journal of the Royal Statistical Society B 1995 57 289-300
    • (1995) Journal of the Royal Statistical Society B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 14
    • 22144461265 scopus 로고    scopus 로고
    • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
    • 551536 15693945
    • Choe SE Boutros M Michelson AM Church GM Halfon MS Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset Genome Biology 2005 6 R16 551536 15693945
    • (2005) Genome Biology , vol.6
    • Choe, S.E.1    Boutros, M.2    Michelson, A.M.3    Church, G.M.4    Halfon, M.S.5
  • 22
    • 33745023798 scopus 로고    scopus 로고
    • A reanalysis of a published Affymetrix GeneChip control dataset
    • 1557755 16563185
    • Dabney AR Storey JD A reanalysis of a published Affymetrix GeneChip control dataset Genome Biology 2006 7 401 1557755 16563185
    • (2006) Genome Biology , vol.7 , pp. 401
    • Dabney, A.R.1    Storey, J.D.2
  • 23
    • 33845562634 scopus 로고    scopus 로고
    • Feature-level exploration of a published Affymetrix GeneChip control dataset
    • 1779590 16953902
    • Irizarry RA Cope LM Wu Z Feature-level exploration of a published Affymetrix GeneChip control dataset Genome Biology 2006 7 404 1779590 16953902
    • (2006) Genome Biology , vol.7 , pp. 404
    • Irizarry, R.A.1    Cope, L.M.2    Wu, Z.3
  • 24
    • 4344641894 scopus 로고    scopus 로고
    • Analysis of alternative splicing with microarrays: Successes and challenges
    • 463277 15239822
    • Lee C Roy M Analysis of alternative splicing with microarrays: Successes and challenges Genome Biology 2004 5 231 463277 15239822
    • (2004) Genome Biology , vol.5 , pp. 231
    • Lee, C.1    Roy, M.2
  • 25
    • 0031877016 scopus 로고    scopus 로고
    • Combining evidence using p-values: Application to sequence homology searches
    • 9520501
    • Bailey TL Gribskov M Combining evidence using p-values: Application to sequence homology searches Bioinformatics 1998 14 48-54 9520501
    • (1998) Bioinformatics , vol.14 , pp. 48-54
    • Bailey, T.L.1    Gribskov, M.2
  • 26
    • 0037304758 scopus 로고    scopus 로고
    • Weighted inverse chi-square method for correlated significance tests
    • Makambi KH Weighted inverse chi-square method for correlated significance tests Journal of Applied Statstics 2003 30 225-234
    • (2003) Journal of Applied Statstics , vol.30 , pp. 225-234
    • Makambi, K.H.1
  • 27
    • 34247504922 scopus 로고    scopus 로고
    • website
    • The Cyber-T website http://visitor.ics.uci.edu/genex/cybert/


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.