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Volumn 365, Issue 1, 2007, Pages 91-102

Functional identification of novel activities: Activity-based selection of proteins from complete proteomes

Author keywords

Affinity bioseparations; Combinatorial libraries; Protein purification; Proteomics

Indexed keywords

CELL PROLIFERATION; LIBRARIES; LIGANDS; PROTEOMICS; PURIFICATION;

EID: 34247275925     PISSN: 00032697     EISSN: 10960309     Source Type: Journal    
DOI: 10.1016/j.ab.2007.02.030     Document Type: Article
Times cited : (5)

References (48)
  • 5
    • 10644268451 scopus 로고    scopus 로고
    • Zooming in: Fractionation strategies in proteomics
    • Stasyk T., and Huber L. Zooming in: Fractionation strategies in proteomics. Proteomics 4 (2004) 3704-3716
    • (2004) Proteomics , vol.4 , pp. 3704-3716
    • Stasyk, T.1    Huber, L.2
  • 6
    • 0036927138 scopus 로고    scopus 로고
    • Emerging techniques for the discovery and validation of therapeutic targets for skeletal diseases
    • Cho C.H., and Nuttall M.E. Emerging techniques for the discovery and validation of therapeutic targets for skeletal diseases. Expert Opin. Ther. Targets 6 (2002) 679-689
    • (2002) Expert Opin. Ther. Targets , vol.6 , pp. 679-689
    • Cho, C.H.1    Nuttall, M.E.2
  • 9
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: History, character, and diagnostic prospects
    • Anderson N.L., and Anderson N.G. The human plasma proteome: History, character, and diagnostic prospects. Mol. Cell. Proteom. 1 (2002) 845-867
    • (2002) Mol. Cell. Proteom. , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 10
    • 20544468941 scopus 로고    scopus 로고
    • Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples
    • Björhall K., Miliotis T., and Davidsson P. Comparison of different depletion strategies for improved resolution in proteomic analysis of human serum samples. Proteomics 4 (2004) 1-11
    • (2004) Proteomics , vol.4 , pp. 1-11
    • Björhall, K.1    Miliotis, T.2    Davidsson, P.3
  • 11
    • 20544455674 scopus 로고    scopus 로고
    • Rarity gives a charm: Evaluation of trace proteins in plasma and serum
    • Lathrop J.T., Carrick K., Hayes T.K., and Hammond D.J. Rarity gives a charm: Evaluation of trace proteins in plasma and serum. Expert Rev. Proteom. 2 (2005) 393-406
    • (2005) Expert Rev. Proteom. , vol.2 , pp. 393-406
    • Lathrop, J.T.1    Carrick, K.2    Hayes, T.K.3    Hammond, D.J.4
  • 13
    • 20544463892 scopus 로고    scopus 로고
    • Depletion and fractionation technologies in plasma proteomic analysis
    • Tam S.W., Pirro J., and Hinerfeld D. Depletion and fractionation technologies in plasma proteomic analysis. Expert Rev. Proteomics 1 (2004) 411-420
    • (2004) Expert Rev. Proteomics , vol.1 , pp. 411-420
    • Tam, S.W.1    Pirro, J.2    Hinerfeld, D.3
  • 14
    • 23944524368 scopus 로고    scopus 로고
    • Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma
    • Echan L.A., Tang H.-Y., Ali-Khan N., Lee K., and Speicher D. Depletion of multiple high-abundance proteins improves protein profiling capacities of human serum and plasma. Proteomics 5 (2005) 3292-3303
    • (2005) Proteomics , vol.5 , pp. 3292-3303
    • Echan, L.A.1    Tang, H.-Y.2    Ali-Khan, N.3    Lee, K.4    Speicher, D.5
  • 17
    • 0027938488 scopus 로고
    • Healthy subjects produce both anti-factor VII and specific anti-idiotype antibodies
    • Gilles J.G., and Saint-Remy J.-M.R. Healthy subjects produce both anti-factor VII and specific anti-idiotype antibodies. J. Clin. Invest. 94 (1994) 1496-1505
    • (1994) J. Clin. Invest. , vol.94 , pp. 1496-1505
    • Gilles, J.G.1    Saint-Remy, J.-M.R.2
  • 18
    • 0036491023 scopus 로고    scopus 로고
    • A distinct repertoire of autoantibodies in hepatocellular carcinoma identified by proteomic analysis
    • Le Naour F., Brichory F., Misek D.E., Brechot C., Hanash S., and Beretta L. A distinct repertoire of autoantibodies in hepatocellular carcinoma identified by proteomic analysis. Mol. Cell. Proteom. 1 (2002) 197-203
    • (2002) Mol. Cell. Proteom. , vol.1 , pp. 197-203
    • Le Naour, F.1    Brichory, F.2    Misek, D.E.3    Brechot, C.4    Hanash, S.5    Beretta, L.6
  • 19
    • 1842507998 scopus 로고    scopus 로고
    • The idiotypic network in autoimmunity: Antibodies that bind antibodies that bind antibodies
    • Shoenfeld Y. The idiotypic network in autoimmunity: Antibodies that bind antibodies that bind antibodies. Nat. Med. 10 (2004) 17-18
    • (2004) Nat. Med. , vol.10 , pp. 17-18
    • Shoenfeld, Y.1
  • 23
    • 0036898579 scopus 로고    scopus 로고
    • Protein microarrays and proteomics
    • MacBeath G. Protein microarrays and proteomics. Nat. Genet. Suppl. 32 (2002) 526-532
    • (2002) Nat. Genet. Suppl. , vol.32 , pp. 526-532
    • MacBeath, G.1
  • 24
    • 30544449081 scopus 로고    scopus 로고
    • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    • Jones R.B., Gordus A., Krall J.A., and MacBeath G. A quantitative protein interaction network for the ErbB receptors using protein microarrays. Nature 439 (2006) 168-174
    • (2006) Nature , vol.439 , pp. 168-174
    • Jones, R.B.1    Gordus, A.2    Krall, J.A.3    MacBeath, G.4
  • 25
    • 0033593013 scopus 로고    scopus 로고
    • Activity-based protein profiling: The serine hydrolases
    • Liu Y., Patricelli M.P., and Cravatt B.F. Activity-based protein profiling: The serine hydrolases. Proc. Natl. Acad. Sci. USA 96 (1999) 14694-14699
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 14694-14699
    • Liu, Y.1    Patricelli, M.P.2    Cravatt, B.F.3
  • 26
    • 0036022519 scopus 로고    scopus 로고
    • Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype
    • Adam G.C., Sorensen E.J., and Cravatt B.F. Proteomic profiling of mechanistically distinct enzyme classes using a common chemotype. Nat. Biotechnol. 20 (2002) 805-809
    • (2002) Nat. Biotechnol. , vol.20 , pp. 805-809
    • Adam, G.C.1    Sorensen, E.J.2    Cravatt, B.F.3
  • 27
    • 0037227959 scopus 로고    scopus 로고
    • An efficient protein complex purification method for functional proteomics in higher eukaryotes
    • Forler D., Kocher T., Rode M., Gentzel M., Izaurralde E., and Wilm M. An efficient protein complex purification method for functional proteomics in higher eukaryotes. Nat. Biotechnol. 21 (2003) 89-92
    • (2003) Nat. Biotechnol. , vol.21 , pp. 89-92
    • Forler, D.1    Kocher, T.2    Rode, M.3    Gentzel, M.4    Izaurralde, E.5    Wilm, M.6
  • 28
    • 34247207782 scopus 로고    scopus 로고
    • D. Hammond, J.T. Lathrop, J. Sarkar, L. Gheorghiu, Method for identifying individual active entities from complex mixtures, U.S. patent application 20040101830 (2003).
  • 29
    • 20544478148 scopus 로고    scopus 로고
    • Reduction of the concentration difference of protein in biological liquids using a library of combinatorial ligands
    • Thulasiraman V., Lin S., Gheorghiu L., Lathrop J.T., Lomas L., Hammond D., and Boschetti E. Reduction of the concentration difference of protein in biological liquids using a library of combinatorial ligands. Electrophoresis 26 (2005) 3561-3571
    • (2005) Electrophoresis , vol.26 , pp. 3561-3571
    • Thulasiraman, V.1    Lin, S.2    Gheorghiu, L.3    Lathrop, J.T.4    Lomas, L.5    Hammond, D.6    Boschetti, E.7
  • 30
    • 33845910934 scopus 로고    scopus 로고
    • The bead blot: A method for identifying ligand-protein and protein-protein interactions using combinatorial libraries of peptide ligands
    • Lathrop J.T., Fijalkowska I., and Hammond D.J. The bead blot: A method for identifying ligand-protein and protein-protein interactions using combinatorial libraries of peptide ligands. Anal. Biochem. 361 (2007) 65-76
    • (2007) Anal. Biochem. , vol.361 , pp. 65-76
    • Lathrop, J.T.1    Fijalkowska, I.2    Hammond, D.J.3
  • 32
    • 0026419328 scopus 로고
    • A new type of synthetic peptide library for identifying ligand-binding activity
    • Lam K.S., Salmon S.E., Hersch E.M., Hruby V.J., Kaznierski W.M., and Knapp R.J. A new type of synthetic peptide library for identifying ligand-binding activity. Nature 354 (1991) 82-84
    • (1991) Nature , vol.354 , pp. 82-84
    • Lam, K.S.1    Salmon, S.E.2    Hersch, E.M.3    Hruby, V.J.4    Kaznierski, W.M.5    Knapp, R.J.6
  • 33
    • 1642297321 scopus 로고    scopus 로고
    • A fluorogenic substrate for detection of organophosphatase activity
    • Soukharev S., and Hammond D.J. A fluorogenic substrate for detection of organophosphatase activity. Anal. Biochem. 327 (2004) 140-148
    • (2004) Anal. Biochem. , vol.327 , pp. 140-148
    • Soukharev, S.1    Hammond, D.J.2
  • 34
    • 0028281045 scopus 로고
    • Characterization of a human cell line (NK-92) with phenotypical and functional characteristics of activated natural killer cells
    • Gong J.H., Maki G., and Kingemann H.G. Characterization of a human cell line (NK-92) with phenotypical and functional characteristics of activated natural killer cells. Leukemia 8 (1994) 652-658
    • (1994) Leukemia , vol.8 , pp. 652-658
    • Gong, J.H.1    Maki, G.2    Kingemann, H.G.3
  • 38
    • 33645057678 scopus 로고    scopus 로고
    • Hexamer peptide affinity resins that bind the Fc region of human immunoglobulin G
    • Yang H., Gurgel P.V., and Carbonell R.G. Hexamer peptide affinity resins that bind the Fc region of human immunoglobulin G. J. Peptide Res. 66 Suppl. 1 (2006) 120-137
    • (2006) J. Peptide Res. , vol.66 , Issue.SUPPL. 1 , pp. 120-137
    • Yang, H.1    Gurgel, P.V.2    Carbonell, R.G.3
  • 39
    • 0030252581 scopus 로고    scopus 로고
    • Design considerations and computer modeling related to the development of molecular scaffolds and peptide mimetics for combinatorial chemistry
    • Hruby V.J., Shenderovich M., Lam K.S., and Lebl M. Design considerations and computer modeling related to the development of molecular scaffolds and peptide mimetics for combinatorial chemistry. Mol. Diversity 2 (1996) 46-56
    • (1996) Mol. Diversity , vol.2 , pp. 46-56
    • Hruby, V.J.1    Shenderovich, M.2    Lam, K.S.3    Lebl, M.4
  • 40
    • 3843124389 scopus 로고    scopus 로고
    • A hexamer peptide ligand that binds selectively to staphylococcal enterotoxin B: Isolation from a solid phase combinatorial library
    • Wang G., De J., Shoeniger J.S., Roe D.C., and Carbonell R.G. A hexamer peptide ligand that binds selectively to staphylococcal enterotoxin B: Isolation from a solid phase combinatorial library. J. Peptide Res. 64 (2004) 51-64
    • (2004) J. Peptide Res. , vol.64 , pp. 51-64
    • Wang, G.1    De, J.2    Shoeniger, J.S.3    Roe, D.C.4    Carbonell, R.G.5
  • 41
    • 0034253327 scopus 로고    scopus 로고
    • Discovery of alpha-1 proteinase inhibitor binding peptides from the screening of a solid phase combinatorial peptide library
    • Bastek P.D., Land J.M., Baumbach G.A., Hammond D.J., and Carbonell R.G. Discovery of alpha-1 proteinase inhibitor binding peptides from the screening of a solid phase combinatorial peptide library. Separ. Sci. Technol. 35 (2000) 1681-1706
    • (2000) Separ. Sci. Technol. , vol.35 , pp. 1681-1706
    • Bastek, P.D.1    Land, J.M.2    Baumbach, G.A.3    Hammond, D.J.4    Carbonell, R.G.5
  • 42
    • 0001889124 scopus 로고
    • Protein purification using affinity ligands deduced from peptide libraries
    • Baumbach G.A., and Hammond D.J. Protein purification using affinity ligands deduced from peptide libraries. BioPharm. 5 (1992) 24-35
    • (1992) BioPharm. , vol.5 , pp. 24-35
    • Baumbach, G.A.1    Hammond, D.J.2
  • 45
    • 0025194466 scopus 로고
    • Inhibition of purified p21ras farnesyl:protein transferase by Cys-AAX tetrapeptides
    • Reiss Y., Goldstein J.L., Seabra M.C., Casey P.J., and Brown M.S. Inhibition of purified p21ras farnesyl:protein transferase by Cys-AAX tetrapeptides. Cell 62 (1990) 81-88
    • (1990) Cell , vol.62 , pp. 81-88
    • Reiss, Y.1    Goldstein, J.L.2    Seabra, M.C.3    Casey, P.J.4    Brown, M.S.5
  • 47
    • 0021125388 scopus 로고
    • The interaction of the phosphorothioate insecticides chlorpyrifos and parathion and their oxygen analogues with bovine serum albumin
    • Sultatos L.G., Basker K.M., Shao M., and Murphy S.D. The interaction of the phosphorothioate insecticides chlorpyrifos and parathion and their oxygen analogues with bovine serum albumin. Mol. Pharmacol. 26 (1984) 99-104
    • (1984) Mol. Pharmacol. , vol.26 , pp. 99-104
    • Sultatos, L.G.1    Basker, K.M.2    Shao, M.3    Murphy, S.D.4


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