-
2
-
-
0037331833
-
Numerical optimization on the euclidean group with applications to camera calibration
-
Feb
-
S. Gwak, J. Kim, and F. C. Park, "Numerical optimization on the euclidean group with applications to camera calibration," Trans. Robot. Automat., vol. 19, no. 1, pp. 65-74, Feb. 2003.
-
(2003)
Trans. Robot. Automat
, vol.19
, Issue.1
, pp. 65-74
-
-
Gwak, S.1
Kim, J.2
Park, F.C.3
-
3
-
-
0002006297
-
Are there pathways for protein folding?
-
C. Levinthal, "Are there pathways for protein folding?," J. Chem. Phys., vol. 65, pp. 44-45, 1968.
-
(1968)
J. Chem. Phys
, vol.65
, pp. 44-45
-
-
Levinthal, C.1
-
4
-
-
0033056708
-
Folding funnels, binding funnels, and protein function
-
C.-J. Tsai, S. Kumar, B. Ma, and R. Nussinov, "Folding funnels, binding funnels, and protein function," Protein Sci., vol. 8, pp. 1981-1990, 1999.
-
(1999)
Protein Sci
, vol.8
, pp. 1981-1990
-
-
Tsai, C.-J.1
Kumar, S.2
Ma, B.3
Nussinov, R.4
-
5
-
-
34247273369
-
-
C. A. Floudas, J. L. Klepeis, and P. M. Pardalos, Global optimization approaches in protein folding and peptide docking, in DIMACS Series in Discrete Mathematics and Theoretical Computer Science, M. Farach-Colton, F. S. Roberts, M. Vingron, and M. Waterman, Eds. Providence, RI: AMS, 1999, 47, pp. 141-171.
-
C. A. Floudas, J. L. Klepeis, and P. M. Pardalos, "Global optimization approaches in protein folding and peptide docking," in DIMACS Series in Discrete Mathematics and Theoretical Computer Science, M. Farach-Colton, F. S. Roberts, M. Vingron, and M. Waterman, Eds. Providence, RI: AMS, 1999, vol. 47, pp. 141-171.
-
-
-
-
6
-
-
0038161052
-
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
-
J. J. Gray, S. Moughon, C. Wang, O. Schueler-Furman, B. Kuhlman, C. A. Rohl, and D. Baker, "Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations," J. Molecular Biol., vol. 331, pp. 281-299, 2003.
-
(2003)
J. Molecular Biol
, vol.331
, pp. 281-299
-
-
Gray, J.J.1
Moughon, S.2
Wang, C.3
Schueler-Furman, O.4
Kuhlman, B.5
Rohl, C.A.6
Baker, D.7
-
7
-
-
0036462492
-
Senti-global simplex optimization and its application to determining the preferred solvation sites of proteins
-
S. Dennis and S. Vajda, "Senti-global simplex optimization and its application to determining the preferred solvation sites of proteins," J. Comp. Chem., vol. 23, no. 3, pp. 319-334, 2002.
-
(2002)
J. Comp. Chem
, vol.23
, Issue.3
, pp. 319-334
-
-
Dennis, S.1
Vajda, S.2
-
8
-
-
0035845563
-
Protein docking along smooth association pathways
-
C. Camacho and S. Vajda, "Protein docking along smooth association pathways," Proc. Natl. Acad. Sci., vol. 98, pp. 10636-10641, 2001.
-
(2001)
Proc. Natl. Acad. Sci
, vol.98
, pp. 10636-10641
-
-
Camacho, C.1
Vajda, S.2
-
9
-
-
34247185662
-
-
A. Phillips, J. Rosen, and K. Dill, Convex global underestimation for molecular structure prediction, in From Local to Global Optimization, P.M. Pardalos, Ed. et al. Norwell, MA: Kluwer, 2001, pp. 1-18.
-
A. Phillips, J. Rosen, and K. Dill, "Convex global underestimation for molecular structure prediction," in From Local to Global Optimization, P.M. Pardalos, Ed. et al. Norwell, MA: Kluwer, 2001, pp. 1-18.
-
-
-
-
10
-
-
0345832301
-
Cluspro: An automated docking and discrimination method for the prediction of protein complexes
-
S. R. Comeau, D. Gatchell, S. Vajda, and C. J. Camacho, "Cluspro: An automated docking and discrimination method for the prediction of protein complexes," Bioinform., vol. 20, pp. 45-50, 2004.
-
(2004)
Bioinform
, vol.20
, pp. 45-50
-
-
Comeau, S.R.1
Gatchell, D.2
Vajda, S.3
Camacho, C.J.4
-
11
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
I. Halperin, B. Ma, H. Wolfson, and R. Nussinov, "Principles of docking: An overview of search algorithms and a guide to scoring functions," Proteins, vol. 47, pp. 409-443, 2002.
-
(2002)
Proteins
, vol.47
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
12
-
-
0031552370
-
Determination of atomic desolvation energies from the structures of crystallized proteins
-
C. Zhang, G. Vasmatzis, and J. Cornette, "Determination of atomic desolvation energies from the structures of crystallized proteins," J Molecular Biol., vol. 267, pp. 707-726, 1997.
-
(1997)
J Molecular Biol
, vol.267
, pp. 707-726
-
-
Zhang, C.1
Vasmatzis, G.2
Cornette, J.3
-
14
-
-
84867973262
-
Ab initio tertiary structure predicition of proteins
-
J. L. Klepeis and C. A. Floudas, "Ab initio tertiary structure predicition of proteins," J. Global Optim., vol. 25, pp. 113-140, 2003.
-
(2003)
J. Global Optim
, vol.25
, pp. 113-140
-
-
Klepeis, J.L.1
Floudas, C.A.2
-
15
-
-
0037445044
-
A new class of hybrid global optimization algorithms for peptide structure predicition: Integrated hybrids
-
J. L. Klepeis, M. J. Pieja, and C. A. Floudas, "A new class of hybrid global optimization algorithms for peptide structure predicition: Integrated hybrids," Comput. Phys. Commun., vol. 151, pp. 121-140, 2003.
-
(2003)
Comput. Phys. Commun
, vol.151
, pp. 121-140
-
-
Klepeis, J.L.1
Pieja, M.J.2
Floudas, C.A.3
-
18
-
-
34247266963
-
-
K. Fujisawa, M. Kojima, K. Nakata, and M. Yamashita, SDPA (SemiDefinite Programming Algorithm) User's Manual 2002 [Online]. Available: http://grid.r.dendai.ac.jp/sdpa/, 6.00
-
K. Fujisawa, M. Kojima, K. Nakata, and M. Yamashita, SDPA (SemiDefinite Programming Algorithm) User's Manual 2002 [Online]. Available: http://grid.r.dendai.ac.jp/sdpa/, 6.00
-
-
-
-
19
-
-
3543056486
-
Convex quadratic approximation
-
J. Rosen and R. Marcia, "Convex quadratic approximation," Comput. Optim. Appl., vol. 28, pp. 173-184, 2004.
-
(2004)
Comput. Optim. Appl
, vol.28
, pp. 173-184
-
-
Rosen, J.1
Marcia, R.2
-
20
-
-
0027657329
-
Semi-infinite programming: Theory, methods and applications
-
R. Hettich and K. O. Kortanek, "Semi-infinite programming: Theory, methods and applications," SIAM Rev., vol. 35, no. 3, pp. 380-429, 1993.
-
(1993)
SIAM Rev
, vol.35
, Issue.3
, pp. 380-429
-
-
Hettich, R.1
Kortanek, K.O.2
-
21
-
-
0003713964
-
-
2nd ed. Belmont, MA: Athena Scientific
-
D. Bertsekas, Nonlinear Programming, 2nd ed. Belmont, MA: Athena Scientific, 1999.
-
(1999)
Nonlinear Programming
-
-
Bertsekas, D.1
-
22
-
-
0004031279
-
Adaptive simulated annealing (ASA)
-
Pasadena, CA: Caltech Alumni Assoc
-
L. Ingber, "Adaptive simulated annealing (ASA)," in Global Optimization C-Code. Pasadena, CA: Caltech Alumni Assoc., 1993.
-
(1993)
Global Optimization C-Code
-
-
Ingber, L.1
-
23
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
B. Brooks, R. Bruccoleri, B. Olafson, D. States, S. Swaminathan, and M. Karplus, "CHARMM: A program for macromolecular energy, minimization, and dynamics calculations," J. Comput. Chem., vol. 4, pp. 187-217, 1983.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187-217
-
-
Brooks, B.1
Bruccoleri, R.2
Olafson, B.3
States, D.4
Swaminathan, S.5
Karplus, M.6
|